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Published online on September 5, 2007, 10.1073/pnas.0703274104

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Biophysics
Real-time observations of single bacteriophage {lambda} DNA ejections in vitro

( fluorescence | microscopy | virus | genome )

Paul Grayson *, Lin Han {dagger}, Tabita Winther {dagger}, and Rob Phillips {dagger}{ddagger}

Departments of *Physics and {dagger}Applied Physics, California Institute of Technology, Pasadena, CA 91125

Edited by Douglas C. Rees, California Institute of Technology, Pasadena, CA, and approved July 6, 2007 (received for review April 11, 2007)

The physical, chemical, and structural features of bacteriophage genome release have been the subject of much recent attention. Many theoretical and experimental studies have centered on the internal forces driving the ejection process. Recently, Mangenot et al. [Mangenot S, Hochrein M, Rädler J, Letellier L (2005) Curr Biol 15:430–435.] reported fluorescence microscopy of phage T5 ejections, which proceeded stepwise between DNA nicks, reaching a translocation speed of 75 kbp/s or higher. It is still unknown how high the speed actually is. This paper reports real-time measurements of ejection from phage {lambda}, revealing how the speed depends on key physical parameters such as genome length and ionic state of the buffer. Except for a pause before DNA is finally released, the entire 48.5-kbp genome is translocated in {approx}1.5 s without interruption, reaching a speed of 60 kbp/s. The process gives insights particularly into the effects of two parameters: a shorter genome length results in lower speed but a shorter total time, and the presence of divalent magnesium ions (replacing sodium) reduces the pressure, increasing ejection time to 8–11 s. Pressure caused by DNA–DNA interactions within the head affects the initiation of ejection, but the close packing is also the dominant source of friction: more tightly packed phages initiate ejection earlier, but with a lower initial speed. The details of ejection revealed in this study are probably generic features of DNA translocation in bacteriophages and have implications for the dynamics of DNA in other biological systems.


Author contributions: P.G. and R.P. designed research; P.G. and T.W. performed research; P.G. and L.H. contributed new reagents/analytic tools; P.G. analyzed data; and P.G. and R.P. wrote the paper.

The authors declare no conflict of interest.

{ddagger}To whom correspondence should be addressed.

Rob Phillips, E-mail: phillips{at}pboc.caltech.edu

www.pnas.org/cgi/doi/10.1073/pnas.0703274104
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