The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process
- Tomitake Tsukihara*,
- Kunitoshi Shimokata†,‡,
- Yukie Katayama†,‡,
- Hideo Shimada†,
- Kazumasa Muramoto§,
- Hiroshi Aoyama¶,
- Masao Mochizuki§,
- Kyoko Shinzawa-Itoh§,
- Eiki Yamashita*,
- Min Yao*,
- Yuzuru Ishimura†, and
- Shinya Yoshikawa§,∥
- *Institute for Protein Research, Osaka University, 3-2 Yamada-oka, Suita 565-0871, Japan; †Department of Biochemistry, School of Medicine, Keio University, 35 Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan; §Department of Life Science, Himeji Institute of Technology and Core Research for Evolutional Science and Technology, Japan Science and Technology Corporation, Kamigohri Akoh, Hyogo 678-1297, Japan; ¶RIKEN Harima Institute, Mikazuki Sayo, Hyogo 679-5148, Japan; and ‡Japan Biological Informatics Consortium, 2-41-6 Aomi, Koto-ku, Tokyo 135-0064, Japan
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Edited by William N. Lipscomb, Harvard University, Cambridge, MA, and approved October 29, 2003 (received for review August 10, 2003)
Abstract
Mitochondrial cytochrome c oxidase plays an essential role in aerobic cellular respiration, reducing dioxygen to water in a process coupled with the pumping of protons across the mitochondrial inner membrane. An aspartate residue, Asp-51, located near the enzyme surface, undergoes a redox-coupled x-ray structural change, which is suggestive of a role for this residue in redox-driven proton pumping. However, functional or mechanistic evidence for the involvement of this residue in proton pumping has not yet been obtained. We report that the Asp-51 → Asn mutation of the bovine enzyme abolishes its proton-pumping function without impairment of the dioxygen reduction activity. Improved x-ray structures (at 1.8/1.9-Å resolution in the fully oxidized/reduced states) show that the net positive charge created upon oxidation of the low-spin heme of the enzyme drives the active proton transport from the interior of the mitochondria to Asp-51 across the enzyme via a water channel and a hydrogen-bond network, located in tandem, and that the enzyme reduction induces proton ejection from the aspartate to the mitochondrial exterior. A peptide bond in the hydrogen-bond network critically inhibits reverse proton transfer through the network. A redox-coupled change in the capacity of the water channel, induced by the hydroxyfarnesylethyl group of the low-spin heme, suggests that the channel functions as an effective proton-collecting region. Infrared results indicate that the conformation of Asp-51 is controlled only by the oxidation state of the low-spin heme. These results indicate that the low-spin heme drives the proton-pumping process.
Footnotes
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↵ ∥ To whom correspondence should be addressed at: Department of Life Science, Himeji Institute of Technology, Kamigohri Akoh, Hyogo 678-1297, Japan. E-mail: yoshi{at}sci.himeji-tech.ac.jp.
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This paper was submitted directly (Track II) to the PNAS office.
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Abbreviations: heme a 3, a high-spin heme A of cytochrome c oxidase; heme a, a low-spin heme A of cytochrome c oxidase; CuB, a copper ion located near heme a 3; CuA, a copper site that receives electrons from ferrocytochrome c; FCCP, carbonyl cyanide p-trifluoromethoxyphenylhydrazone; FTIR, Fourier transform infrared spectroscopy.
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Data deposition: The atomic parameters of cytochrome c oxidase have been deposited in the Protein Data Bank, www.rcsb.org (PDB ID codes 1V54 and 1V55).
- Copyright © 2003, The National Academy of Sciences





