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Published online on June 11, 2007, 10.1073/pnas.0703893104
PNAS | June 19, 2007 | vol. 104 | no. 25 | 10583-10588


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BIOLOGICAL SCIENCES / IMMUNOLOGY
Structure of CD84 provides insight into SLAM family function

Qingrong Yan{dagger}, Vladimir N. Malashkevich{ddagger}, Alexander Fedorov{ddagger}, Elena Fedorov{ddagger}, Erhu Cao{dagger}, Jeffrey W. Lary§, James L. Cole§, Stanley G. Nathenson{dagger},||, and Steven C. Almo{ddagger},{dagger}{dagger},||

Departments of {dagger}Cell Biology, Microbiology and Immunology, {ddagger}Biochemistry, and {dagger}{dagger}Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, NY 10461; and §National Analytical Ultracentrifugation Facility, University of Connecticut, Biotechnology/Bioservices Center Unit 3149, Storrs, CT 06269

Contributed by Stanley G. Nathenson, April 30, 2007 (received for review April 10, 2007)

The signaling lymphocyte activation molecule (SLAM) family includes homophilic and heterophilic receptors that modulate both adaptive and innate immune responses. These receptors share a common ectodomain organization: a membrane-proximal immunoglobulin constant domain and a membrane-distal immunoglobulin variable domain that is responsible for ligand recognition. CD84 is a homophilic family member that enhances IFN-{gamma} secretion in activated T cells. Our solution studies revealed that CD84 strongly self-associates with a Kd in the submicromolar range. These data, in combination with previous reports, demonstrate that the SLAM family homophilic affinities span at least three orders of magnitude and suggest that differences in the affinities may contribute to the distinct signaling behavior exhibited by the individual family members. The 2.0 Å crystal structure of the human CD84 immunoglobulin variable domain revealed an orthogonal homophilic dimer with high similarity to the recently reported homophilic dimer of the SLAM family member NTB-A. Structural and chemical differences in the homophilic interfaces provide a mechanism to prevent the formation of undesired heterodimers among the SLAM family homophilic receptors. These structural data also suggest that, like NTB-A, all SLAM family homophilic dimers adopt a highly kinked organization spanning an end-to-end distance of {approx}140 Å. This common molecular dimension provides an opportunity for all two-domain SLAM family receptors to colocalize within the immunological synapse and bridge the T cell and antigen-presenting cell.

homophilic | dimer | affinity


Author contributions: Q.Y., E.C., S.G.N., and S.C.A. designed research; Q.Y., V.N.M., A.F., E.F., J.W.L., and J.L.C. performed research; Q.Y. contributed new reagents/analytic tools; Q.Y., V.N.M., J.W.L., and J.L.C. analyzed data; and Q.Y. wrote the paper.

The authors declare no conflict of interest.

Data deposition: The structure factors and coordinates reported in this paper have been deposited in the Protein Data Bank, www.pdb.org (PDB ID code 2PKD).

This article contains supporting information online at www.pnas.org/cgi/content/full/0703893104/DC1.

||To whom correspondence may be addressed. E-mail: nathenso{at}aecom.yu.edu or almo{at}aecom.yu.edu

© 2007 by The National Academy of Sciences of the USA


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