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Published online on November 27, 2007, 10.1073/pnas.0709994104
PNAS | December 4, 2007 | vol. 104 | no. 49 | 19404-19409


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BIOLOGICAL SCIENCES / EVOLUTION
Evolutionary plasticity of developmental gene regulatory network architecture

Veronica F. Hinman* and Eric H. Davidson{dagger},{ddagger}

*634A Mellon Institute, Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213; and {dagger}Division of Biology 156-29, California Institute of Technology, Pasadena, CA 91125

Contributed by Eric H. Davidson, October 22, 2007 (received for review September 16, 2007)

Sea stars and sea urchins evolved from a last common ancestor that lived at the end of the Cambrian, approximately half a billion years ago. In a previous comparative study of the gene regulatory networks (GRNs) that embody the genomic program for embryogenesis in these animals, we discovered an almost perfectly conserved five-gene network subcircuit required for endoderm specification. We show here that the GRN structure upstream and downstream of the conserved network kernel has, by contrast, diverged extensively. Mesoderm specification is accomplished quite differently; the Delta–Notch signaling system is used in radically distinct ways; and various regulatory genes have been coopted to different functions. The conservation of the conserved kernel is thus the more remarkable. The results indicate types of network linkage subject to evolutionary change. An emergent theme is that subcircuit design may be preserved even while the identity of genes performing given roles changes because of alteration in their cis-regulatory control systems.

echinoderm | gene regulation | Asterina miniata | cis regulation | Delta


Author contributions: V.F.H. and E.H.D. designed research; V.F.H. performed research; V.F.H. and E.H.D. analyzed data; and V.F.H. and E.H.D. wrote the paper.

The authors declare no conflict of interest.

This article contains supporting information online at www.pnas.org/cgi/content/full/0709994104/DC1.

{ddagger}To whom correspondence should be addressed. E-mail: davidson{at}caltech.edu

© 2007 by The National Academy of Sciences of the USA


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