A bait and switch hapten strategy generates catalytic antibodies for phosphodiester hydrolysis

  1. Paul Wentworth, Jr.,
  2. Yunqi Liu,
  3. Anita D. Wentworth,
  4. Ping Fan,
  5. Matthew J. Foley, and
  6. Kim D. Janda*
  1. Departments of Chemistry and Molecular Biology, The Scripps Research Institute and The Skaggs Institute for Chemical Biology, 10550 North Torrey Pines Road, La Jolla, CA 92037
  1. Communicated by Richard A. Lerner, The Scripps Research Institute, La Jolla, CA (received for review January 30, 1998)

Abstract

General base catalysis supplied by the histidine-12 (H-12) residue of ribonuclease (RNase) A has long been appreciated as a major component of the catalytic power of the enzyme. In an attempt to harness the catalytic power of a general base into antibody catalysis of phosphodiester bond hydrolysis, the quaternary ammonium phosphate 1 was used as a bait and switch hapten. Based on precedence, it was rationalized that this positively charged hapten could induce a counter-charged residue in the antibody binding site at a locus suitable for it to deprotonate the 2′-hydroxyl group of the anhydroribitol phosphodiester substrate 2. After murine immunization with hapten 1, mAb production yielded a library of 35 antibodies that bound to a BSA-1 conjugate. From this panel, two were found to catalyze the cyclization-cleavage of phosphodiester 2. Kinetic studies at pH 7.49 (Hepes, 20 mM) and 25°C showed that the most active antibody, MATT.F-1, obeyed classical Michaelis–Menten kinetics with a K m = 104 μM, a k cat = 0.44 min 1, and a k cat/k uncat = 1.7 × 103. Hapten 1 stoichiometrically inhibits the catalytic activity of the antibody. MATT.F-1 is the most proficient antibody–catalyst (1.6 × 107 M 1) yet generated for the function of phosphodiester hydrolysis and emphasizes the utility of the bait and switch hapten paradigm when generating antibody catalysts for processes for which general-base catalysis can be exploited.

Footnotes

  • * To whom reprint requests should be addressed. e-mail: kdjanda{at}scripps.edu.

  • Reaction conditions: 10 μM MATT.F-1 active sites, 1–100 μM inhibitor 2, and 200 μM substrate in Hepes (20 mM, pH 7.49).

  • ABBREVIATIONS:
    DCM,
    dichloromethane;
    TCA,
    trifluoroacetic acid;
    THF,
    tetrahydrofuran;
    THP,
    tetrahydropyranyl;
    DMT,
    dimethoxytrityl
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