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Kamal et al. 10.1073/pnas.0511238103. |
Supporting Table 4
Supporting Figure 6
Supporting Figure 7
Supporting Figure 8
Supporting Figure 9
Supporting Figure 10
Supporting Figure 6
Fig. 6. Cluster of MER121 elements flanking the inhibin beta A gene (INHBA). Plotted region: chr7:40,830,638-42,080,728 (hg17).
Supporting Figure 7
Fig. 7. Cluster of MER121 elements in the vicinity of the LYPLAL1 gene. Plotted region: chr1:215,207,169-216,236,000 (hg17).
Supporting Figure 8
Fig. 8. Cluster of MER121 elements flanking the TBX3, TBX5 T-box transcription factors. Plotted region: chr12:113,073,288-114,761,212 (hg17).
Supporting Figure 9
Fig. 9. Cluster of MER121 elements surrounding various genes on chromosome 11. Plotted region: chr11:127,535,166-128,851,166 (hg17).
Supporting Figure 10
Fig. 10. Cluster of MER121 elements surrounding various genes on chromosome 17. Plotted region: chr17:50,142,550-51,859,660 (hg17).
Table 4. Alignment of MER121 and RNA genes to ESTs
|
Element |
Human ESTs |
Mouse ESTs |
||
|
No. similar |
No. significant |
No. similar |
No. significant |
|
|
MER121 |
6 |
0 |
13 |
0 |
|
5S |
142 |
5 |
28 |
2 |
|
7SK |
252 |
150 |
42 |
22 |
|
7SLRNA |
0 |
0 |
0 |
0 |
|
BC200 |
0 |
0 |
0 |
0 |
|
Y |
393 |
4 |
2 |
0 |
|
U1 |
241 |
48 |
30 |
7 |
|
U2 |
127 |
14 |
26 |
11 |
|
U3 |
101 |
29 |
14 |
11 |
|
U4 |
89 |
12 |
11 |
6 |
|
U5 |
17 |
0 |
23 |
8 |
|
U6 |
250 |
2 |
154 |
3 |
|
U7 |
25 |
0 |
0 |
0 |
|
U8 |
33 |
4 |
0 |
0 |
|
U13 |
306 |
0 |
4 |
0 |
|
U14 |
6 |
0 |
2 |
0 |
|
U17 |
6 |
0 |
18 |
6 |
|
tRNA |
1,024 |
16 |
107 |
0 |
We also blasted the MER121 consensus (412 bp) sequence to the entire collection of human ESTs (6,287,602 sequences, 3.35 Gb) and mouse ESTs (4,688,039 sequences, 2.18 Gb) deposited in GenBank We also blasted the consensus sequences of all RNA genes found within the REPEATMASKER library to both databases. Those alignments where >50 bp of the EST aligned and whose E-value was more significant than E = 0.001 were declared to be "similar." Similar alignments where >70% of the full EST aligned to the RNA gene consensus were identified as "significant."
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