RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis Dicer-like proteins

ID

Target site alignment

Coordinates

Position

Score

Function

Query (3′-5′)

GAAGGAACAGAAGGAGGAAG

At1g76950.1

cuucauugucuuccuccuuc

45-64

5′ UTR

1

RCC1 family

At1g75330.1

cuucuucgucuuccuccuuc

83-102

CDS

1.5

Ornithine carbamoyltransferase, chloroplast/ornithine transcarbamylase

At3g52500.1

cuucauugucuucuuucuuc

262-281

5′ UTR

1.5

Aspartyl protease

At1g14640.1

cuuccucguccuccuccuuc

1,666-1,685

CDS

2

Similar to human splicing factor GB:CAA59494

At3g52810.1

cuucgaugucuuccuccuuc

603-622

CDS

2

Purple acid phosphatase (PAP21)

At4g37050.1

guugcuugucuuccuccuuc

47-66

5′ UTR

2

Patatin, putative similar to patatin-like latex allergen

At3g06060.1

cuuccuucucuuccucauuc

61-80

5′ UTR

2.5

Short-chain dehydrogenase/reductase (SDR)

At1g17220.1

cuucuucuucuuccuccuuc

54-73

5′ UTR

2.5

Translation initiation factor IF-2, chloroplast

At2g18890.1

cuucuucuucuuccuccuuc

8-27

5′ UTR

2.5

Protein kinase family protein

At4g01410.1

cuuucuucuccuccuccuuc

25-44

5′ UTR

2.5

Hairpin-induced family protein/HIN1 family protein

At2g18670.1

cuucuuucucuuccucguuc

375-394

CDS

3

Zinc-finger (C3HC4-type RING finger) family protein

At2g37380.1

cuucguugucuucuucguuc

810-829

CDS

3

Expressed protein

At4g24390.2

cauucuugucuuccuccauc

2,378-2,397

3′ UTR

3

F-box family protein (FBX14)

At4g39040.1

cuuccuugucauucugcuuc

202-221

CDS

3

Expressed protein

At5g61360.1

cuucuuugucuugcuccugc

899-918

3′ UTR

3

Expressed protein