The new mutation theory of phenotypic evolution

10.1073/pnas.0703349104

Supporting Information

Files in this Data Supplement:

SI Table 3




Table 3. Examples of physiological and morphological characters affected by mutations in the protein-coding regions of genes. More examples of physiological characters are given in Nei (26)

Protein/gene

Organism

Amino acid or nucleotide changes

Character involved

Reference

Physiological characters

Hemoglobin

Crocodile

5 aa

Underwater living

1

Hemoglobin

Llama

1 aa

High-altitude life

2

Lysozyme

Ruminants

2 aa

Stomach acidity

3

Opsin

Vertebrates

5 aa

Color vision

4

Opsin

Birds

1 aa

UV sensitivity

5

Period (per) gene

Drosophila

2-aa repeats

Courtship song

6

psbA gene

Plants

1 aa

Herbicide resistance

7

TFL1/FT

Arabidopsis

1 aa

Flowering activation

8

dNK

Animals

3 aa

DNA metabolism

9

Morphological characters

Le

Pea

1 aa

Stem length

10

MC1R

Beach mouse

1 aa

Coat color

11

HOXD13

Human

1-4 aa

Limb

12

Oca2

Cave fish

Exon deletion

Albinism

13

MC1R

Rock pocket mouse

4 aa

Coat color

14

MSH-R

Mouse

1 aa

Coat color

15

MSH-R

Cattle

1 aa

Coat color

16

MC1R

Pig

1 aa

Coat color

17

ASIP (AGOUTI)

Jaguarundis

2-bp deletion

Coat color

18

MC1R

Jaguar

5-aa deletion

Coat color

18

MC1R

Lion tamarin

8-aa deletion

Coat color

19

TYR

Human

1-5 aa

Albinism

20

VRS1

Barley

1 aa

Six-rowed spike

21

Romosa2

Maize

1 aa

Flower shape

22

Div

Snapdragon

4-bp deletion

Flower symmetry

23

ABCC11

Human

1 aa

Earwax

24

IGF1

Dog

A few bp

Body size

25

1. Perutz MF (1983) Mol Biol Evol 1:1-28.

2. Piccinini M, Kleinschmidt T, Jurgens KD, Braunitzer G (1990) Biol Chem Hoppe Seyler 371:641-648.

3. Jolles P, Schoentgen F, Jolles J, Dobson DE, Prager EM, Wilson AC (1984) J Biol Chem 259:11617-11625.

4. Yokoyama S, Radlwimmer FB (2001) Genetics 158:1697-1710.

5. Yokoyama S, Radlwimmer FB, Blow NS (2000) Proc Natl Acad Sci USA 97:7366-7371.

6. Yu Q, Colot HV, Kyriacou CP, Hall JC, Rosbash M (1987) Nature 326:765-769.

7. Hirschberg J, McIntosh L (1983) Science 222:1346-1348.

8. Hanzawa Y, Money T, Bradley D (2005) Proc Natl Acad Sci USA 102:7748-7753.

9. Knecht WM, Sandrini P, Johansson K, Eklund H, Munch-Peterson B, Piskur J (2002) EMBO J 21:1873-1880.

10. Lester D, Ross JJ, Davies PJ, Reid JB (1997) Plant Cell 9:1435-1443.

11. Hoekstra HE, Hirschmann RJ, Bundey RA, Insel PA, Crossland JP (2006) Science 313:101-104.

12. Johnson D, Kan SH, Oldridge M, Trembath RC, Roche P, Esnouf RM, Giele H, Wilkie AO (2003) Am J Hum Genet 72:984-997.

13. Protas ME, Hersey C, Kochanek D, Zhou Y, Wilkens H, Jeffery WR, Zon LI, Borowsky R, Tabin CJ (2006) Nat Genet 38:107-111.

14. Nachman MW, Hoekstra HE, D'Agostino SL (2003) Proc Natl Acad Sci USA 100:5268-5273.

15. Robbins LS, Nadeau JH, Johnson KR, Kelly MA, Roselli-Rehfuss L, Baack E, Mountjoy KG, Cone RD (1993) Cell 72:827-834.

16. Klungland H, Vage DI, Gomez-Raya L, Adalsteinsson S, Lien S (1995) Mamm Genome 6:636-639.

17. Kijas JM, Wales R, Tornsten A, Chardon P, Moller M, Andersson L (1998) Genetics 150:1177-1185.

18. Eizirik E, Yuhki N, Johnson WE, Menotti-Raymond M, Hannah SS, O'Brien SJ (2003) Curr Biol 13:448-453.

19. Mundy NI, Kelly J (2003) Am J Phys Anthropol 121:67-80.

20. Opitz S, Kasmann-Kellner B, Kaufmann M, Schwinger E, Zuhlke C (2004) Hum Mutat 23:630-631.

21. Komatsuda T, Pourkheirandish M, He C, Azhaguvel P, Kanamori H, Perovic D, Stein N, Graner A, Wicker T, Tagiri A, et al. (2007) Proc Natl Acad Sci USA 104:1424-1429.

22. Bortiri E, Chuck G, Vollbrecht E, Rocheford T, Martienssen R, Hake S (2006) Plant Cell 18:574-585.

23. Galego L, Almeida J (2002) Genes Dev 16:880-891.

24. Yoshiura K, Kinoshita A, Ishida T, Ninokata A, Ishikawa T, Kaname T, Bannai M, Tokunaga K, Sonoda S, Komaki R, et al. (2006) Nat Genet 38:324-330.

25. Sutter NB, Bustamante CD, Chase K, Gray MM, Zhao K, Zhu L, Padhukasahasram B, Karlins E, Davis S, Jones PG, et al. (2007) Science 316:112-115.

26. Nei M (2005) Mol Biol Evol 22:2318-2342.

This Article

  1. PNAS July 24, 2007 vol. 104 no. 30 12235-12242