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Museum of Vertebrate Zoology and Department of Integrative Biology,
University of California, Berkeley, CA 94720-3160
The Ensatina eschscholtzii complex of plethodontid
salamanders, a well-known "ring species," is thought to
illustrate stages in the speciation process. Early research, based on
morphology and coloration, has been extended by the incorporation of
studies of protein variation and mitochondrial DNA sequences. The new data show that the complex includes a number of geographically and
genetically distinct components that are at or near the species level.
The complex is old and apparently has undergone instances of range
contraction, isolation, differentiation, and then expansion and
secondary contact. While the hypothesis that speciation is retarded by
gene flow around the ring is not supported by molecular data, the
general biogeographical hypothesis is supported. There is evidence of a
north to south range expansion along two axes, with secondary contact
and completion of the ring in southern California. Current research
targets regions once thought to show primary intergradation, but which
molecular markers reveal to be zones of secondary contact. Here
emphasis is on the subspecies E. e. xanthoptica, which
is involved in four distinct secondary contacts in central California.
There is evidence of renewed genetic interactions upon recontact, with
greater genetic differentiation within xanthoptica than
between it and some of the interacting populations. The complex
presents a full array of intermediate conditions between well-marked
species and geographically variable populations. Geographically
differentiated segments represent a diversity of depths of time of
isolation and admixture, reflecting the complicated geomorphological
history of California. Ensatina illustrates the
continuing difficulty in making taxonomic assignments in complexes
studied during species formation.
The famous books by Dobzhansky (1) and Mayr (2)
initiated a long period of general agreement on species concepts and speciation, but in recent years controversy has again developed. Once
ignited (3), the debate raged for years, and only now do I sense a
developing consensus (4, 5). New methods and techniques have changed
the criteria by which species concepts are made manifest in taxonomies.
My focus here is a celebrated ring species, the plethodontid salamander
Ensatina, once touted by Dobzhansky (6) as an example of
incipient, but incomplete, speciation.
Ensatina are fully terrestrial salamanders distributed in
coniferous forests and oak woodland along the Pacific Coast from southern British Columbia to northern Baja, CA, extending inland to the
western slopes of the Cascades, the Sierra Nevada, and the Peninsular
Ranges. At one time four species were recognized, but at the height of
popularity of the Evolutionary Synthesis, a detailed analysis of
coloration and morphology led Stebbins (7) to the conclusion that they
were parts of a polytypic species arranged in the form of a ring around
the Central Valley of California. Stebbins recognized seven subspecies
of Ensatina eschscholtzii (Fig. 1).
What makes this study so interesting is a historical biogeographic
hypothesis and its implications: the species originated in present-day
northwestern California and southwestern Oregon and spread southward.
Along the coast the species developed a Mullerian mimicry relationship
with newts (the model) and evolved a uniform reddish brown dorsal
coloration and a light pink to orange ventral coloration. In the inland
mountains the species evolved a cryptic, spotted, or blotched color
pattern. As the two arms of the expanding distribution moved southward,
they came into sympatry in the southern Peninsular Ranges. In
Dobzhansky's view, while the ring showed terminal overlap and
demonstrated nearly all stages in a speciation process (primary
intergradation with adaptive divergence, secondary contact with
hybridization, and finally sympatry), speciation was thwarted by
on-going gene flow via intermediates around the ring (6). The
demonstration (8-10) of some hybridization in the southern California
zone of sympatry added credence to this interpretation.
A survey of protein variation in 19 populations throughout the complex
disclosed great differentiation and showed that gene flow cannot be
holding this far-flung complex together (11, 12). The analysis revealed
values of Fst > 0.7, thus refuting the
hypothesis of continuous gene flow. While these data do not affect the
biogeographic hypothesis (7), they raise the possibility of a group of
closely related species whose borders remain to be
identified.
The hypothesis of a northern origin and a southern spread along two
fronts was based on the presence in the north of high levels of
variation in color pattern in the subspecies E. e. picta, and to a lesser degree in the surrounding form, E. e.
oregonensis. Increasing genetic divergence from north to south was
inferred from the progressive divergence in morphology (basically,
color pattern) between coastal and interior forms south of the area of
continuous distribution at the north end of the Central Valley (7).
Free interbreeding was thought to occur in the north, a region of
morphological intergradation. To the south hybridization occurs where
E. e. xanthoptica from the coast has established populations
in the foothills of the central Sierra Nevada, where it meets E. e. platensis (Fig. 1). Sympatry with little hybridization occurs
between the southernmost forms, the coastal E. e.
eschscholtzii and the inland E. e. klauberi. Subsequent
research has shown that xanthoptica and platensis
hybridize wherever they meet, but in very narrow hybrid zones (on the
order of several home range diameters in width, or a few hundred
meters). While klauberi and eschscholtzii hybridize, they do so less frequently and in even narrower hybrid zones
(10, 13). At the southernmost area of contact, the two forms are
sympatric with no evidence of past or present hybridization (13, 14).
I have tested Stebbins' biogeographic hypothesis. Polymorphism and
heterozygosity, estimated from allozymes, are extraordinarily high in
northwestern California, among the highest recorded for any vertebrate,
whereas more southern populations have less variation (the least occurs
in the postulated colonists, the Sierran xanthoptica) (11,
12). The total number of presumptive alleles in the northern populations is also high (e.g., in one population, 59 alleles for 28 allozymes, n = 10), as expected for old, large
populations relative to newer, smaller ones. Genetic distance generally
increases between paired comparative populations on either side of the
valley from north to south, also as expected (12).
A phylogenetic analysis of sequence variation in the mitochondrial gene
cytochrome b also shows substantial variation within Ensatina (15). The greatest variation occurs in the north.
Within the subspecies oregonensis, picta, and
intergrades are several distinct, distantly related haplotypes. There
are two monophyletic clades in the complex with respect to this gene.
The first includes xanthoptica and eschscholtzii
as sister groups; these are the southern subspecies of the coastal arm.
The second clade includes klauberi, E. e.
croceater, and southern populations of platensis; these
are the southernmost parts of the inland arm. These data support
Stebbins' biogeographic scenario.
The protein and DNA studies were not conducted at a sufficiently fine
scale to determine whether or not species formation has already
occurred. Questions arose concerning taxonomy; for example, some
considered klauberi to be a separate species (ref. 16; but
see ref. 17). A second allozymic survey of 49 populations from
picta through oregonensis to the blotched forms
along the inland arm disclosed a complicated pattern of isolation by
distance in the south, relative genetic uniformity in one large
northern area, and two distributional and genetic gaps (17). Periods of
separation and differentiation were hypothesized to have been followed
by secondary contacts, with resumption of gene flow. While evidence of
past separation persists in molecular markers, allozymes and
mitochondrial haplotypes show transitions in different areas and
morphological uniformity prevails across old borders. No taxonomic
changes were proposed, pending completion of other studies. One critic
has focused attention not on the contact zones but on the areas of
relative uniformity, and argued that many, perhaps 11 or more, species
constitute the Ensatina complex (18). The controversy, in
part, involves what occurs upon the recontact of previously separated
units (D.B.W. and C.J. Schneider, unpublished data). As Dobzhansky
(ref. 20, p. 205) identified the problem: "how much gene exchange
between diverging populations is possible without arresting and
reversing the divergence?" Here I present new information bearing on
this question. My conclusion is that incipient species formation is
occurring in the nearly continuous "ring," but that species
borders remain unclear.
This paper summarizes previously unpublished data regarding
interactions of the taxa oregonensis,
xanthoptica, and eschscholtzii in central coastal
California, mainly from populations ranging along the Pacific Coast
from northern Mendocino County to central Monterey County and in the
hills east of San Francisco Bay. Although this region encompasses large
zones of intergradation (based on morphological studies, ref. 7), for
purposes of clarity populations are assigned to taxa. Results are
derived from three separate kinds of data: morphological, allozymic,
and mitochondrial sequences. Morphological data follow earlier analyses
(7, 10), but include a much larger data set. A complex-wide study of
proteins (19 populations, 5 of which are relevant to this study, using
26 allozymic loci) laid the foundation for subsequent work (12). A
first stage examined 25 loci in 20 populations (n per
population = 8-22; mean, 13.6) from regions east (East Bay) and
north (North Bay) of San Francisco Bay; a second studied 27 loci in 20 East and South Bay populations (n = 2-20; mean, 8.6),
and a third used 22 of the most relevant loci in 34 populations
(n = 2-19; mean, 7.0) from the North and South Bay.
These will be reported as first, second, and third studies in this
paper. It is not possible to directly combine these studies, which were
done at different times and used some different buffers, in part
because of the large number of alleles detected. This complex data set
will be published elsewhere, and only the main results are presented
here. Nei (21) genetic distances (D) are reported. Sequences
of the cytochrome b gene (664-775 bp) constitute the third
kind of data. This is a growing data set (presently including data for
over 80 populations), representing an expansion of the initial study
(12), and research is actively in progress. Results are based on
preliminary analyses of the data.
Populations identified as xanthoptica, unblotched
salamanders with large amounts of orange pigmentation (especially
ventrally) and a bright yellow upper iris, occur in the North, South
and East Bay regions and in the west-central Sierra Nevada. This taxon occupies a key position in the ring complex. A zone of morphological intergradation between xanthoptica and
eschscholtzii extends from Atascadero northward in the Coast
Range to the Monterey Bay region (7). Morphological intergradation of
xanthoptica with oregonensis occurs from near
Monterey Bay north to the vicinity of Ft. Ross (7). In the Sierra
Nevada xanthoptica hybridizes with platensis (14). While acknowledging the validity of the analysis of coloration (7), there is little evidence of the intergradation described above
using molecular markers.
General results are summarized in Fig. 2.
Although the distribution of xanthoptica is interrupted by
major present-day barriers, the taxon maintains some integrity as a
unit, especially with respect to coloration and the monophyly of DNA
sequences. Minimal D is 0.08 between North Bay and East Bay
localities, and 0.05 between East Bay and South Bay localities.
However, between South Bay and North Bay localities there is relatively
great and varying divergence (D = 0.15-0.47). The
genetic connection between the North Bay and South Bay appears to be
via the East Bay; San Francisco Bay and associated Carquinez Straits
(north) and Santa Clara Valley (south), which currently interrupt the
range, are apparently recent barriers. There are some relatively high
D values (to 0.19) between the East Bay and the South Bay
(populations likely to be even more divergent have not been included in
the same study as yet). There is variation within each of these three
areas. D within the North Bay reaches 0.15 (n,
number of populations compared = 5), within the East Bay, 0.09 (n = 4), and within the South Bay, 0.31 (n = 6 in each of two studies using different
populations). In the eastern part of the South Bay distances are below
0.15, but some western populations are highly divergent from everything studied (these also are the populations with the greatest divergence to
North Bay xanthoptica). Several populations contain both
xanthoptica and oregonensis alleles; these
introgressed populations were not classified.
There is a finger-like projection of xanthoptica into
oregonensis in the North Bay, and this small range is
divided by inhospitable (now agricultural and urban) lowlands to the
west of Santa Rosa. To the west, north, and east, populations are
genetically oregonensis. D values between the two
taxa exceed 0.3. Based on allozymes, populations identified by
coloration (7) as xanthoptica are correctly assigned, but
populations identified as morphological intergrades are assigned to
oregonensis (with exceptions discussed below).
On the southern San Francisco Peninsula in the Santa Cruz Mountains
oregonensis and xanthoptica meet with a genetic
gap of D = 0.16-0.32. Further south, the genetic
distance between xanthoptica and eschscholtzii
across the Pajaro River is somewhat less (D = 0.15-0.2). There is little evidence as yet for gene flow between nearby populations of oregonensis and xanthoptica
in this region, although two local populations appear to be admixed.
There remain small local geographic gaps in our sampling. However, as
we have shortened the geographic distance between
xanthoptica and eschscholtzii in the vicinity of
Monterey Bay, D has dropped from 0.32 (12) to 0.15, and
there remains a zone about 30 km in width which is largely unsampled
(habitat along the Pajaro River has been disrupted by agricultural
activities and urbanization). These data suggest that D will
drop further as additional populations are discovered in the
intervening area.
We sampled only a small portion of the distribution of
oregonensis (it ranges to southern Canada), but uncovered
surprisingly great local differentiation. The first study included 18 populations extending from northern Mendocino down to southern Marin
counties. D ranged as high as 0.26, and 31% of population
comparisons exceeded D = 0.15 (the approximate level at
which species borders typically occur in the closely related genus
Plethodon; ref. 22). Detailed analysis of this variation is
beyond the scope of the present paper, but I observe that variation is
great and no areas of high uniformity or of potential species borders
were uncovered; furthermore, borders determined from haplotypes do not
coincide with those determined from allozymes (D.B.W. and C.J.
Schneider, unpublished data). The highest values of D within
oregonensis involved comparisons across the range, between
populations along the Pacific Coast and those relatively far inland.
For no nearest neighbor comparison is D = 0, and many
are in the range D = 0.02-0.07. The third study included 12 populations (a few repeats from the earlier study but
mainly different) of oregonensis extending from the Russian River area through the Coast Range to southern Marin County, with a few
populations in eastern Sonoma County. Even in this relatively small
region genetic diversification is great, with D reaching a
high of 0.23 (across the breadth of the range) and 36% of the comparisons exceeding D = 0.15. Near neighbors always
have the lowest values, but rarely less than D = 0.04. Genetic distances across the Russian River range from 0.08 to 0.15, suggesting that it has restricted gene flow to some extent.
Populations of oregonensis occur in the South Bay, mainly on
the northern part of the San Francisco Peninsula, but extending southeast to near Loma Prieta. Within this small peninsular area diversification is great. A maximum D = 0.16 is present
in study three (n = 4), with only one comparison
D < 0.1. In study two (n = 3) the
highest value is D = 0.08.
The mean D between oregonensis north and south of
the Golden Gate is 0.16 (range, 0.08-0.27; 15 populations). There are
three comparisons in the range of 0.08-0.09, showing that the Golden Gate has not been a major distributional barrier.
There is a genetic gap between oregonensis and
xanthoptica in the North Bay. D ranges from 0.28 to more than 0.5, but in the areas where populations of the two
approach most closely D = 0.3-0.4. There are five to
eight potentially useful loci for constructing hybrid indices (14), but
none are fixed and there is so much variation, especially in
oregonensis, that indices would only be useful locally. Some
populations appear to be introgressed or admixed (see below). There is
no evidence of hybridization per se (i.e., no clear
F1 hybrids or backcrosses).
In two areas near Santa Rosa there is evidence of gene flow between
oregonensis and xanthoptica (Fig.
3), in the form of admixture. This is at the
extreme northwestern limit of the range of xanthoptica, in
the hills immediately north of Santa Rosa and on the west side of the
valley that separates these hills from the main Coast Range near
Forestville. In the first area three populations were sampled from
nearly continuous habitat near Mark West Creek. One of these populations (no. 28, n = 19) is similar to
xanthoptica in coloration, and another (no. 31, n = 10) is similar to oregonensis. These populations are separated by less than 10 km, but D = 0.34. Both are highly variable (no. 28 has 36 alleles; no. 31 has 34 alleles at 22 loci), but only no. 28 shows signs of limited gene flow from the other taxon (alleles characteristic of oregonensis
are present at low frequency for four loci). A third population (no. 24, n = 5), 5 km south of population no. 31, displays
coloration somewhat intermediate between oregonensis and
xanthoptica, but genetic distances are high to both
neighboring populations (0.22 to no. 28; 0.30 to no. 31). There are 32 alleles in the relatively small sample, but no evidence of
F1 hybrids. However, the sample is fixed for an otherwise
rare allele for malate dehydrogenase (Mdh; EC 1.1.1.37) (found at a
frequency of 0.06 in population 31; absent in population 28), fixed for
an allele for Acon 1 (EC 4.2.1.3) that is relatively common in
population 31 and absent in no. 28, and fixed for an allele for proline
depeptidase (Pep-d; EC 3.4.13.9) which is in high frequency in
population 28 (0.91) but absent in population 31. Acon 2 has an allele
found only in population 24 and an admixed population across the valley
to the west. Population 24 lacks an allele for glutamic-oxaloacetic
transaminase (Got; EC 2.6.1.1) that is fixed in population 31 but
absent in no. 28, and it has two of the three alleles that appear in population 28. Evidently gene flow as well as some sorting of variants
has occurred. This suggests that there is no intrinsic barrier (e.g.,
specific mate recognition systems, or postmating isolating mechanisms)
to genetic exchange (there is no evidence of such barriers anywhere in
the complex). The region of admixture is narrow, in relation to the
range of the taxa, but probably not with respect to the relatively
narrow home ranges known to be characteristic of this complex (23, 24).
Some additional populations in this area are introgressed as well and
these are not assigned to any taxon.
The second area is even narrower (Fig. 4).
Across the Russian River at the northwestern limit of the range of
xanthoptica there is a genetic gap D = 0.3 in less than 1 km. As much as 0.15 occurs within oregonensis
just to the west of the contact zone, but the intertaxon distance is
substantially greater and implies secondary contact of well
differentiated groups. There is also evident change in color pattern on
either side of the Russian River; on the east and south salamanders
have extensive orange pigmentation and a bright yellow dorsal iris,
whereas on the west and north orange pigmentation is greatly reduced,
especially ventrally, and the upper iris is much paler. Two relatively
large samples separated by less than 5 km have a D = 0.36. The oregonensis population (no. 25, n = 16) contains 41 alleles, and the xanthoptica population (no. 23, n = 11) contains 31 alleles, but only one
locus (different in each population) is potentially introgressed from
the other taxon in either population. The population of
xanthoptica (no. 30) closest to oregonensis (no.
25) is small (n = 5) and has oregonensis alleles at only one locus. One population (no. 22, n = 6) has high genetic distance to all neighboring populations, even those less than 10 km distant (D = 0.11 to one
xanthoptica; 0.22 to two oregonensis), including
the other admixed population (D = 0.31 to no. 24). This
sample is of mixed origin, but its heterozygosity (mean direct count
0.12) is about the same as populations 25 and 23 and there are no clear
hybrid genotypes. Specimens have the coloration of
xanthoptica, but alleles characteristic of
oregonensis are present in all six potential marker loci and
it has a high total number of alleles for a small sample (population
36), further indicating its composite nature.
In the South Bay the genetic gap between xanthoptica and
oregonensis is generally less than in the North Bay (Fig.
5). In the second study, D ranges
from 0.16-0.32 (mean, 0.23) between South Bay oregonensis
and all South Bay and East Bay xanthoptica, with the largest
and smallest values both representing South Bay comparisons. The mean
is identical for South Bay and East Bay comparisons. Two populations
(one small sample from the east slopes of the Santa Cruz Mountains and
the other from the Pacific coastal zone of the mid-peninsula) appear to
be admixed, although it is more difficult to detect possibly diagnostic
loci than in the North Bay. The coastal population (n = 7) is genetically equidistant between the two taxa (D = 0.11-0.29, mean 0.20 to xanthoptica; 0.21-0.24 to
oregonensis). In the third study, D between South Bay oregonensis and xanthoptica ranges from 0.22 to 0.35 (mean, 0.28). One population appears to be admixed
(D = 0.17-0.34 to South Bay xanthoptica;
D = 0.17-0.22 to South Bay oregonensis, some only
Distances between xanthoptica and eschscholtzii
are slightly less than between xanthoptica and
oregonensis: D = 0.21-0.37 between East Bay
xanthoptica and eschscholtzii, and 0.14-0.32 between South Bay xanthoptica and eschscholtzii.
In the third study D = 0.15-0.39, mean 0.23 for South
Bay xanthoptica and eschscholtzii; D = 0.24-0.38, mean 0.29 for eschscholtzii
to oregonensis. Populations of xanthoptica and
eschscholtzii that are closest geographically have the
lowest values.
More than 80 populations have been sampled for sequence variation in
the cytochrome b gene (ref. 15 and unpublished data). Corrected sequence divergence between the three taxa considered here is
0.05-0.07 for xanthoptica to eschscholtzii, in
excess of 0.09 for eschscholtzii to oregonensis,
and in excess of 0.11 for xanthoptica to
oregonensis. There is substantial variation within all taxa,
but especially oregonensis (which is paraphyletic with
respect to this gene). A phylogenetic analysis of sequence data
indicates that xanthoptica and eschscholtzii are
sister taxa and form a monophyletic group (15), but their closest
relative is unclear and recent analysis of a much larger sample has
failed to find a closest relative. The base of the cytochrome
b gene tree for the Ensatina complex is unstable.
The contact zones detected with allozymes described herein are also
detectable with mitochondrial DNA; a detailed study by D. Parks in this
laboratory is in progress.
While the main features of the historical biogeographic hypothesis
(7) for the Ensatina complex are generally supported by
recent work, we now can see that the original scenario was too simple.
Differentiation is greater than originally envisioned, and there is
evidence throughout the ring of subdivision, differentiation, and
several recontacts. Nevertheless, the complex displays features of a
ring-like series of interacting units. In the north boundaries between
apparently old units have been obscured by recurrent gene flow and
different character sets do not coincide geographically; as one moves
south the units become more distinct and data sets are more
coordinated. In regions of secondary contact in the Sierra Nevada and
southern California, clear hybridization occurs; although hybrids and
backcrosses are healthy and fertile, there is apparently selection
against them (14). Elsewhere in the ring there is no unambiguous
evidence of hybridization, by which I mean sympatry and production of
offspring from mating of unlike forms, but there is evidence of genetic
admixture and introgression between geographically adjacent units,
usually with more genetic differentiation within units than between
them along their borders.
The intergradation zones based on morphology (7) are far too broad when
compared with data derived from molecular markers. Do the molecular
markers identify species borders? If one treats Ensatina
eschscholtzii as a simple species, it is more differentiated genetically than most species of vertebrates (25). While several suggestions have been made for taxonomic reclassification (16, 18, 26),
all proposed solutions are problematic (D.B.W. and C. J. Schneider,
unpublished data). Morphological DNA and allozyme criteria exist for
making taxonomic decisions, but in this complex they frequently do not
coincide geographically (D.B.W. and C. J. Schneider, unpublished
data). One of the most distinctive taxa in the complex is
xanthoptica. A case might be made for recognizing it as a
separate species. However, as shown here, there are leaky borders with
neighboring taxa and it remains unclear if the taxa are merging or
continuing to diverge. Furthermore, there is a broad overlap in
comparison of within and between taxon genetic distances, so that
genetic distances are much greater within xanthoptica than
they are between taxa in the zones of secondary contact. Accordingly,
xanthoptica lacks integrity as an historical unit.
The other taxa treated here offer contrasts with
xanthoptica. For example, eschscholtzii is much
less differentiated genetically, suggesting that its southward spread
has been recent. On the other hand, oregonensis (including
picta) is more deeply differentiated and may represent an
ancient, persistent ancestral stock of the complex as a whole. However,
we have found no places in northern California where borders identified
by one data set are matched by those found with other data sets, so
past differentiates have apparently merged as a result of on-going
genetic interactions across geography. Even if one recognized
eschscholtzii and xanthoptica as separate taxa on
phylogenetic grounds (e.g., mtDNA sequences), one would be left with a
plesiomorphic oregonensis-picta agglomeration. Proposals that this agglomeration be separated into several species (18) are unsatisfactory (D.B.W. and C. J. Schneider, unpublished data),
and if one started down the path of naming as species all identifiable
pieces of the phylogenetic nexus there would be far more species than
anyone has proposed to date (e.g., in unpublished and incomplete
research we have identified many haplotype clades). Accordingly, I
recommend maintaining the current taxonomy while research continues.
Sequence data suggest that eschscholtzii and
xanthoptica are sister taxa (ref. 15 and unpublished data).
I propose that a common ancestor of these two was isolated to the south
of the main range of what became present-day oregonensis.
Secondary contacts among these taxa are a consequence of major
geomorphological reorganizations of coastal California associated with
the complicated tectonic history of the region. One possible
reconstruction is inspired by the historical biogeographic hypothesis
for the plethodontid salamander genus Batrachoseps (ref. 27,
see also ref. 28) and assumption of a general (but as yet uncalibrated)
molecular clock. For various periods during the Tertiary, precursor
drainages of the present-day Central Valley entered the Pacific Ocean
in the vicinity of present-day Monterey Bay, where the largest marine canyon (of Grand Canyon scale) on the Pacific Coast of North America is
found (29). I suggest that the proposed common ancestor of the
xanthoptica-eschscholtzii clade may have been
isolated south of this region on the order of 5 million years ago, and
that differentiation proceeded during this period of isolation.
Precursors to xanthoptica and eschscholtzii may
have been isolated on either side of the San Andreas Fault (Fig.
6). Land in this area has been extremely unstable over a long period of time, and has been moving at a rate of
Against the hypothesis laid out above is the fact that in both the
North Bay and the South Bay, xanthoptica is relatively differentiated genetically, more so than would be predicted by the
lowest genetic distances measured between North and South Bay to East
Bay populations. Perhaps the initial recontact between xanthoptica and oregonensis is old; the lowest
genetic distances between regions might reflect relatively recent
genetic exchange between particular populations.
In related taxa in eastern North America, many nearly cryptic species
have been recognized (19, 22, 31). I suggest that there are historical
reasons for the differences in pattern in eastern and western North
America. In eastern North America there may have been far greater
effects of Pleistocene glaciation than in the west, and this may have
led to more local range restriction as well as extinction. This may
have sharpened borders between groups of populations and heightened the
genetic cohesion of units. In contrast, in California glaciation
effects were more limited, although they have been postulated to have
played a role in contributing to the differentiation of some taxa and
to have sharpened boundaries in the Sierra Nevada (17). Instead, in
California there has been a history of extensive geomorphological
evolution coinciding with the history of the Ensatina
complex. The time and space dimensions of the diversification are
interconnected. The history of this complex has probably featured
substantial isolation, differentiation, and multiple recontacts (Fig.
7). In effect, there are rings within rings in
this complex, resulting from many levels of history being manifest in a
single complicated pattern of variation, expressed somewhat differently
at the three levels investigated to date
Proc. Natl. Acad. Sci. USA
Vol. 94,
pp. 7761-7767,
July 1997
Colloquium Paper
This paper was presented at a colloquium entitled "Genetics
and the Origin of Species," organized by Francisco J. Ayala
(Co-chair) and Walter M. Fitch (Co-chair), held January 30-February 1, 1997, at the National Academy of Sciences Beckman Center in Irvine, CA.
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
Fig. 1.
The Ensatina complex, showing
distribution of taxa recognized by Stebbins (7), but with borders based
on molecular markers rather than morphological traits.
[View Larger Version of this Image (36K GIF file)]
Fig. 2.
Distribution of taxa of Ensatina
in the San Francisco Bay region, showing D (21) based on
allozyme data between selected neighboring populations. Bold face type,
D between taxa; normal type, D within
taxa. The mean and range of D between North Bay and
South Bay oregonensis is shown.
[View Larger Version of this Image (55K GIF file)]
Fig. 3.
The xanthoptica-oregonensis
contact zone north of San Francisco Bay in the Santa Rosa-Russian
River area. Populations 22 and 24 are intermediate in nature.
D values between selected populations are indicated.
Shading in upper part of figure indicates wooded land.
[View Larger Version of this Image (110K GIF file)]
Fig. 4.
Expansion of Fig. 3, showing the Russian River
contact zone. Populations are sorted by taxon, but population 22 is
intermediate in most respects. pop, Population number in study three;
n, sample size;
, mean heterozygosity (direct count); P,
proportion of loci polymorphic; A, number of alleles in 22 allozymic
loci; X, fraction of xanthoptica marker alleles present
in populations assigned to oregonensis; O, fraction of
oregonensis marker alleles in populations assigned to
xanthoptica.
[View Larger Version of this Image (26K GIF file)]
5 km distant), but it is a small sample (n = 3) and distances are high because of sampling effects. Distances in
the third study would be expected to be greater than in the second, because only more variable, potentially diagnostic loci were selected for study. The values in Fig. 5 reflect the likely upward bias.
Fig. 5.
Modern barriers to dispersal in the San Francisco
Bay area for taxa discussed in this paper. Genetic distances between
selected populations indicated on lines connecting them. Bold
D values are between taxa.
[View Larger Version of this Image (76K GIF file)]
35 mm/year over the last 4-5 million years (30). I postulate that
land connections were made and broken repeatedly, and that movement of
primordial xanthoptica into the present-day South Bay region
occurred relatively early, based on the high degree of genetic
differentiation that has taken place. Subsequently xanthoptica moved into the East Bay and North Bay, as well
as across the Central Valley. Very recently the Central Valley has established a new drainage to the ocean, at the Golden Gate, as a
result of the Inner Coast Range becoming continuous. The northward expansion of xanthoptica brought it into secondary contact
with oregonensis, in the South Bay and independently in the
North Bay. The expansion of xanthoptica into the foothills
of the Sierra Nevada led to contacts with both northern and southern
platensis (14, 17). That all of these contacts are recent is
suggested by the low minimal D values (0.05-0.08 between
geographic areas within xanthoptica). Secondary contact
between xanthoptica and eschscholtzii probably
occurred from the north, for apparently xanthoptica had more
dispersal access from the Santa Cruz Mountains than did
eschscholtzii, which was isolated to the south by a flat, sandy (and thus relatively inhospitable) area east of Monterey Bay, as
well as two major rivers (Pajaro, Salinas). The region of the Pajaro
River is a major biogeographic border (27), as it marks the southern
boundary of many amphibians: Ambystoma macrodactylum, Aneides flavipunctatus, Batrachoseps attenuatus,
Dicamptodon ensatus, Taricha granulosa and
E. e. xanthoptica. It is the northern boundary of
Batrachoseps pacificus and E. e. eschscholtzii.
Fig. 6.
Hypothetical distribution of the
Ensatina complex
5 million years before present.
Based on reconstruction of California paleogeography by Yanev (27).
Approximate location of precursors to genetically defined units within
the Ensatina complex are indicated. oreg-picta, oregonensis and picta; plat 1, northern
platensis (15, 17); plat 2-croc-klau, southern
platensis plus croceater plus
klauberi (15, 17); xanth, xanthoptica;
esch, eschscholtzii; SF, approximate position of present
day San Francisco; SD, approximate position of present-day San Diego.
The approximate positions of the San Andreas Fault and Monterey Canyon
(the latter at the outflow of the Pajaro and Salinas Rivers) are
indicated.
[View Larger Version of this Image (113K GIF file)]
DNA sequences, allozymes, and
color pattern. While the complex appears to be in a state of incipient
species formation, which makes taxonomy problematic, it provides an
instructive evolutionary example.
Fig. 7.
Historical biogeographic interpretation for the
Ensatina complex. Five zones of secondary interaction
are shown. 1, Interaction of klauberi and
eschscholtzii. 2, Complex interaction between northern
and southern platensis and of these interactors with xanthoptica in the central Sierra Nevada. 3, Interaction
of oregonensis and northern platensis in
the Lassen Peak area. 4, North Bay interaction of
oregonensis and xanthoptica. 5, South Bay
interaction of oregonensis and
xanthoptica and of xanthoptica and
eschscholtzii.
[View Larger Version of this Image (23K GIF file)]
*
To whom reprint requests should be addressed at: Museum of
Vertebrate Zoology, 3101 Valley Life Sciences Building, University of
California, Berkeley, CA 94720-3160. e-mail:
wakelab{at}uclink4.berkeley.edu.
I thank M. Frelow, T. Jackman, D. Nguyen, C. Schneider, and K. P. Yanev for their extensive laboratory assistance, and C. Brown and many other individuals who have helped me in field work. Illustrations are by K. Klitz. I have benefited from discussions, comments on the manuscript, or both, with R. Bello, C. Brown, M. Garcia Paris, C. Haddad, R. Highton, T. Jackman, S. Kuchta, M. Mahoney, D. Parks, C. Schneider, R. Stebbins, M. Wake, K. Yanev, and K. Zamudio. The manuscript was improved by comments from two anonymous reviewers. This work was supported by grants from the National Science Foundation and the Gompertz Professorship.
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