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* Department of Medical Research, China Medical College Hospital,
Taichung 404, Taiwan; Edited by Yuet Wai Kan, University of California, San Francisco,
CA, and approved June 18, 2001 (received for review March 2, 2001)
Spinal muscular atrophy (SMA) is an autosomal recessive disease
characterized by degeneration of the anterior horn cells of the spinal
cord, leading to muscular paralysis with muscular atrophy. No effective
treatment of this disorder is presently available. Studies of the
correlation between disease severity and the amount of survival motor
neuron (SMN) protein have shown an inverse relationship. We report that
sodium butyrate effectively increases the amount of exon 7-containing
SMN protein in SMA lymphoid cell lines by changing the alternative
splicing pattern of exon 7 in the SMN2 gene. In
vivo, sodium butyrate treatment of SMA-like mice resulted in
increased expression of SMN protein in motor neurons of the spinal cord
and resulted in significant improvement of SMA clinical symptoms. Oral
administration of sodium butyrate to intercrosses of heterozygous
pregnant knockout-transgenic SMA-like mice decreased the birth rate of
severe types of SMA-like mice, and SMA symptoms were ameliorated for
all three types of SMA-like mice. These results suggest that sodium
butyrate may be an effective drug for the treatment of human SMA patients.
Proximal spinal muscular
atrophy (SMA) is an autosomal recessive disease characterized by
degeneration of anterior horn cells of the spinal cord, leading to
muscular paralysis with muscular atrophy. Clinical diagnosis of SMA is
based on findings of progressive symmetric weakness and atrophy of the
proximal muscles. Affected individuals usually are classified into
three groups according to the age of onset and progression of the
disease. Children with type I SMA are most severely affected and
usually have SMA symptoms before the age of 6 months and rarely live
beyond 2 years. Type II and type III SMA are milder forms and the age
of onset of symptoms varies between 6 months and 17 years. SMA is one
of the most common fatal autosomal recessive diseases in children with
a carrier rate of 1-2% in the general population and an incidence of
1 in 10,000 newborns (1). No specific treatment is currently available for SMA patients.
Two survival motor neuron (SMN) genes (SMN) are typically
present on 5q13: SMN1 (also known as
SMNT, SMNtel) and
SMN2 (also known as SMNC,
SMNcen). Loss-of-function mutations of both copies of the
telomeric gene, SMN1, are correlated with the development of
SMA (2-5). The nearly identical centromeric gene, SMN2,
appears to modify disease severity in a dose-dependent manner, as SMN
protein levels from this gene are correlated with disease severity (6,
7). However, the expressed amount of intact SMN protein from
SMN2 does not provide adequate protection from SMA (8).
Although SMN1 and SMN2 encode identical proteins,
all three forms of proximal SMA are caused by mutation in the
SMN1 gene, but not in the SMN2 gene (2-5). The
differences between these highly homologous genes are in their RNA
expression patterns (9-12). Most SMN2 transcripts lack
exons 3, 5, or most frequently, 7, with only a small amount of
full-length mRNA generated. On the other hand, the SMN1 gene
expresses mostly a full-length mRNA, and only a small fraction of its
transcripts are spliced to remove exons 3, 5, or 7 (11, 12). Recent
studies also have shown that an AG-rich exonic splice enhancer in the
center of SMN exon 7 is required for constitutive inclusion
of exon 7 (13). These findings also imply that the low levels of
full-length SMN protein produced by SMN2 are insufficient to
protect against disease development (6, 7). Clearly, the total amount
of full-length oligomerization-competent SMN protein is a critical SMA
determinant, and the amount of SMN protein correlates with the severity
of pathologies (14). In addition, there is a strong correlation between
the SMN2 copy number and phenotype in human SMA and SMA-like
mice (5-7, 15, 16).
We recently developed a SMA mouse model that genotypically and
phenotypically mimics human SMA (15). The severity of pathology in the
knockout-transgenic mice is correlated with the amount of intact SMN
protein. The difference between SMN1 and SMN2
gene expression is the number of full-length transcripts and the amount of SMN protein, and all 5q-linked SMA patients have at least a single
intact copy of SMN2. Drugs that modify the pattern of
SMN2 transcript in SMA patients to increase full-length
SMN mRNA expression and the amount of SMN protein may have a
therapeutic effect on SMA patients. As a step toward designing a
therapeutic protocol for SMA patients, we used Epstein-Barr
virus-transformed lymphoid cell lines from SMA patients to screen a
series of drugs for their possible effect on the expression of the
SMN2 gene. One drug that was found to be effective was then
used to treat our SMA-like mice to determine its potential for the
treatment of human SMA.
SR proteins (Ser-Arg proteins) constitute a family of pre-mRNA splicing
factors that are highly conserved throughout the metazoa (17, 18).
These proteins have multiple functions in splicing. Biochemical
experiments have provided strong evidence that SR proteins play
essential roles in general, or constitutive, splicing. They seem to be
equally important in splicing regulation, through their ability to
modulate selection of alternative splicing sites in a
concentration-dependent manner, which contributes to activation (and
repression) of splicing through interaction with elements in the
pre-mRNA known as splicing enhancers (or silencers) (19-21). Recently,
Lorson and Androphy (13) demonstrated that an AG-rich exonic splice
enhancer in the center of SMN exon 7 is required for
inclusion of exon 7, and Hofmann et al. (22) further
demonstrated that Htra2- Cell Culture.
We established Epstein-Barr virus-transformed lymphoid cell lines from
different SMA-type patients (five cases each for types I, II, and III)
with deleted SMN1 genes by using the following procedures
(4). Lymphocytes were collected from whole blood of patients by Ficoll
hypaque separation. The buffy coat was collected and washed twice with
5 ml PBS. The pellet was resuspended in 5 ml RPMI medium containing 0.5 ml Epstein-Barr virus, 50 µl phytohemagglutinin (0.5 mg/ml), and
50 µl cyclosporine (0.2 mg/ml). Cells were incubated at 37°C with
5% CO2 until they became viable.
Mice.
Five independent human SMN2 gene transgenic mice were
generated and crossed with mice heterozygous for the Smn
locus knockout. Transgenic mice that were also homozygous for the
knockout alleles (Smn Reverse Transcriptase-PCR (RT-PCR) Analysis.
RT from total RNA was performed by using a random primer
5'-TN10-3' and Moloney murine leukemia virus RT.
PCR was then used to amplify the single-stranded cDNA by using one or
three pairs of primers covering the entire SMN coding
region. The first primer pair used to amplify the fragment from the 5'
untranslated region to exon 4 was: forward primer, P1,
5'-CGCTGCGCATCCGCGGGTTTGCTATGGC-3' and reverse primer, P2,
5'-TCCCAGTCTTGGCCCTGGCAT-3'. The second primer pair used to amplify
exons 4-6 was: forward primer, P3, 5'-AACATCAAGCCCAAATCTGC-3' and reverse primer,
P4, 5'-GCCAGTATGATAGCCACTCATGTACCATG-3'. The third primer pair amplified from exon 6 to exon 8 was: forward primer, P5, 5'-CTCCCATATGTCCAGATTC-TCTTGATGATGC-3' and reverse primer, P6, 5'-ACTGCCTCACCACCGTGCTGG-3'. P1 and P6 were used to amplify
the full-length SMN cDNA. The PCRs were performed as
described (15).
Subcellular Fractionation.
Fresh frozen spinal cord, brain, and skeletal muscle samples (500 mg)
from different types of SMA mice were fractionated as described (15).
Tissues were homogenized with a tight-fitting glass pestle in ice-cold
buffer A (10 mM Hepes, pH 7.9/10 mM KCl/0.1 mM EDTA/0.1 mM
EGTA/1 mM DTT/0.5 mM PMSF/2 µg/ml leupeptin/2 µg/ml pepstatin) with 0.5% Nonidet P-40 and kept on ice for 15 min. The
nuclei were pelleted by centrifugation at 800 g for 3 min. The nuclear pellet was resuspended by trituration in 100 µl of buffer
B (20 mM Hepes, pH 7.9/0.4 M NaCl/1 mM EDTA/1 mM EGTA/1 mM
DTT/1 mM PMSF/2 µg/ml leupeptin/2 µg/ml pepstatin) and kept on ice for 15 min followed by centrifugation at 15,000 g for
10 min at 4°C. The supernatant (soluble nuclear extract) was removed, and the insoluble nuclear pellet was further sonicated in sonication buffer (100 mM Tris·HCl, pH 7.4/1% SDS/5 mM EDTA/1 mM
DTT/1 mM PMSF/2 µg/ml leupeptin/2 µg/ml pepstatin).
Western Blot Analysis and Histopathological Analysis.
Synthetic peptides containing part of human SMN exon 7 (amino acids
279-288) and exon 2 (amino acids 72-84) were used to immunize rabbits
and to purify specific antibodies (H2 and H7) from rabbit crude sera
with an EAH-Sepharose 4B column (Amersham Pharmacia) according to the
manufacturer's instructions. Two mouse anti-SR protein antibodies
(anti-SRp20 and 16H3), purchased from Zymed, were used to detect the
human SR proteins. Protein samples were loaded on a 5% polyacrylamide
stacking gel above a 12% separating gel, and the gel was run with a
discontinuous buffer using Laemmli's method. After electrophoresis,
proteins were transferred electrophoretically to poly(vinylidene
difluoride) membranes (Millipore). After the transfer, the membranes
were blocked in TBST (50 mM Tris·HCl, pH 7.5/150 mM
NaCl/0.05% Tween 20) containing 4% BSA for 2 h at room
temperature. Blots were incubated with adequate dilution of anti-SMN
exon 2 (H2), anti-SMN exon 7 (H7), or anti-SR protein antibodies in
TBST for 2 h at room temperature. The blots were washed for three
20-min periods in TBST and then incubated with a 1:32,000 dilution of
an anti-rabbit IgG alkaline phosphatase conjugate (Sigma) in TBST for
1 h at room temperature. The reaction was detected by adding 1.5%
5-bromo-4-chloro-3-indoyl phosphate and 3% nitro blue tetrazolium in a
developing buffer (100 mM NaCl/5 mM MgCl2/100
mM Tris·HCl, pH 9.5). Histopathological analysis and
immunohistochemical staining were performed as described (15).
Statistics.
The intensity of the RT-PCR products containing exon 7, lacking exon 7, or SMN and tubulin in Western blot were analyzed by the Collage Image
Analysis System to calculate the ratio of these products (12). Results
from multiple experiments are expressed as mean ± standard error.
Survival data of treated and untreated mice are presented as a
Kaplan-Meier plot using the log rank test. A standard
Sodium Butyrate Changes the Processing of SMN2 Gene
Transcripts.
Epstein-Barr virus-transformed lymphoid cell lines from all three
types of SMA patients were established and used for drug screening.
Several drugs were tested to investigate their potential effect on the
expression of the SMN2 gene by using RT-PCR. Among them,
sodium butyrate was able to change the expression pattern of the
SMN2 gene. The amount of exon 7-containing SMN
mRNAs increased in lymphoid cells cultured with 5 ng/ml to 500 µg/ml of sodium butyrate (Fig.
1a). The maximal effect was
found after 4 h of stimulation (Fig. 1b). Sodium
butyrate-treated lymphoid cells from all types of SMA patients showed
an increased number of full-length SMN transcripts (Fig.
1c). To understand the mechanism involved in this change in
full-length SMN transcript levels, separate RT-PCRs were
used to examine the patterns of alternative splicing in exons 3, 5, and
7. We found that the alternative splicing pattern of exons 3 and 5 was
unchanged after sodium butyrate stimulation (Fig. 1 d and
e), but that the alternative splicing pattern of exon 7 of
the SMN2 gene changed to the SMN1 pattern (Fig.
1f). Therefore, addition of sodium butyrate in the
culture resulted in an increased number of full-length SMN
mRNA transcripts.
Medical Sciences
Treatment of spinal muscular atrophy by sodium butyrate
,
,
,
Institute of Molecular Biology,
Academia Sinica, Taipei 115, Taiwan; and § Departments of
Pediatrics and Clinical Laboratory, Kaohsiung Medical University,
Kaohsiung 807, Taiwan
![]()
Abstract
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
Introduction
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
1, an SR-like splicing factor, promoted the
inclusion of SMN exon 7, stimulating full-length
SMN2 expression. Htra2-
1 specifically functioned through
and bound to an AG-rich exonic splicing enhancer in SMN exon
7 (22). In the present study, we have explored the relationship between
the drug's effect and SR protein.
![]()
Materials and Methods
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
/
SMN2) were then generated by crossing with the above mice.
These knockout-transgenic mice developed progressive motor-neuron
disease similar to that in human SMA patients. The SMA-like mice were classified into three groups based on their phenotypes, which were
judged by three authors (J.-G.C., H.-M.H.-L., and H.L.). Mice with the
most severe pathological form (type 1) did not develop furry hair and
died before postnatal day 10; mice with intermediate severity (type 2)
showed poor activity and variable symptoms and died at
2-4 weeks;
the type 3 mice survived and bred normally, but had short and enlarged
tails (15). SMA-like mice (nonpregnant and pregnant) were supplied with
sterile water ad libitum and rodent pellets. The sodium
butyrate-treated group received sodium butyrate at a concentration of
0.8 mg/ml or 8 mg/ml in distilled water (with no other substances
added), beginning immediately after diagnosis or after 15 days of
gestation in SMA-like pregnant mice. Both groups consumed
5-10 ml
per day per mouse. After 1-12 weeks of treatment, the mice were
killed, and their organs or tissues were quickly removed and frozen in
liquid nitrogen.
2 test was used to assess differences in the
frequency of mild or severe phenotype in the SMA-like mice born from
treated and untreated mothers, which analyzed the percentage of type 1 (or 2 + 3) newborn mice as a fraction of the total number of pups. Differences with a P value of <0.05 were considered
statistically significant.
![]()
Results
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Abstract
Introduction
Materials and Methods
Results
Discussion
References

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Fig. 1.
Effects of sodium butyrate on the expression of the human
SMN2 gene in lymphoid cell lines of SMA patients with
SMN1 deletion. (a) RT-PCR analyses of
exons 6-8 of the SMN2 gene showed that the exon
7-containing transcript was increased with 5 ng/ml to 500 µg/ml
sodium butyrate treatment. Quantitative analysis of the exon
7-containing transcript is shown on the right, in which the ratio of
exon 7 inclusion to exon 7 exclusion is indicated (mean ± SD;
n = 3). M: 100 bp-ladder marker. E7 in.: exon 7 inclusion; E7 ex.: exon 7 exclusion. (b) The SMA
lymphoid cell lines were treated with sodium butyrate for 1, 2, 3, 4, 8, 22, and 32 h. RT-PCR analyses of exons 6-8 of the
SMN2 gene showed that the exon 7-containing transcript
was increased after 4-h treatment with 500 ng/ml sodium butyrate. A
quantitative analysis of the exon 7-containing transcript is shown on
the right (mean ± SD; n = 3).
(c) RT-PCR amplification of whole cDNAs (exons 1-8) of
SMN2 genes from different types of SMA lymphoid cell
lines showed that the full-length transcript of the SMN2
gene is very similar to the transcript of the SMN1 gene
after sodium butyrate treatment. (I, II, and III represent different
types of SMA lymphoid cell lines;
, untreated; +, treated; C,
normal). (d-f) RT-PCR analyses of exons 1-4
(d), 4-6 (e), and 6-8
(f) for SMN2 gene expression
showed that only the transcript pattern of exon 7 was changed due to
alternative splicing. There was no change for exons 3 and 5.
Sodium Butyrate Increases Exon 7-Containing SMN Protein in SMA Lymphoid Cells. To determine whether sodium butyrate-induced expression pattern changes of SMN2 resulted in an increased amount of exon 7-containing SMN protein, we used different concentrations of sodium butyrate to treat the lymphoid cell lines (three cases each for types I, II, and III) established from different types of SMA patients. In both cytosolic and nuclear fractions, Western blot analysis indicated that sodium butyrate also increased the intact SMN protein after 4-h stimulation with 0.5 ng/ml to 500 µg/ml of sodium butyrate (Fig. 2). However, a decreasing effect was found in the cytosolic fraction when more than 5 µg/ml sodium butyrate was used.
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Sodium Butyrate Increases Specific SR Proteins in SMA Lymphoid Cell Lines. SR proteins are known to play an important role in the processes of alternative splicing of genes (17, 18), and previous studies have identified a splicing enhancer element in exon 7 of the SMN gene (10, 13). To investigate sodium butyrate-induced expression pattern changes of SMN2 involving the SR protein, we used different antibodies for SR proteins to detect SR protein expression patterns after sodium butyrate treatment. The results showed that two SR proteins of about 27 kDa were induced after treatment, which were detected by using mouse anti-SR protein 16H3 antibody. However, no difference was found by using the mouse anti-SRp20 antibody (Fig. 3a). These induced SR protein reactions were blocked by either a specific mitogen-activated protein kinase inhibitor (PD98059) or an inhibitor of protein phosphatases (okadaic acid) (Fig. 3b). All lymphoid cell lines (three cases each for types I, II, and III), which were established from different types of SMA patients, showed similar results.
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Treatment of Types 2 and 3 SMA-Like Mice with Sodium Butyrate.
To investigate whether the in vitro effects of sodium
butyrate on lymphoid cell lines also occur in SMA-like mice in
vivo, we used sodium butyrate to treat types 2 and 3 SMA-like mice
(15 mice each). Sodium butyrate was administered to SMA-like mice via a
0.8 mg/ml or 8 mg/ml solution available ad libitum in their drinking water for 1-12 weeks. The amount of sodium butyrate consumed by SMA-like mice was estimated to be
4-80 mg/day. The sodium butyrate-treated type 2 SMA-like mice survived 4-5 days longer than
the untreated ones (Fig. 4). Some of the
treated type 2 mice ultimately died from infection caused by traumatic
injury of the paralytic hindlimbs.
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Treatment of Intercross Heterozygous Knockout-Transgenic Mice after
Pregnancy.
Because the survival time of type 1 and some type 2 SMA mice is short,
evaluation of the therapeutic effect of sodium butyrate is difficult.
To overcome these problems, sodium butyrate (4-80 mg/day) was
administered ad libitum in drinking water to pregnant Smn+/
SMN2 intercrossed
mice, which had previously produced offspring of different types of SMA
progeny, especially the severe form (15). Sodium butyrate treatment
began on the 15th day postcoitum to avoid a possible teratogenic
effect. A total of 21 pups with type 1, 22 with type 2, and 48 with
type 3 were born from the treated group; and 35 pups with type 1, 17 with type 2, and 38 with type 3 were born from the untreated group
(Table 1). These results show that
treatment with sodium butyrate from day 15 of pregnancy significantly
ameliorated the clinical symptoms of the severe SMA phenotype, leading
to milder types of SMA in offspring (Table 1). In addition, fewer
SMA-like mice were born in the untreated group, which may have been due
to some severe-type mice being aborted in the fetal stage or eaten by
their mothers after birth, and thus remaining uncounted.
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Discussion |
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The amount of exon 7-containing SMN protein has been shown to be an inverse indicator of disease severity in SMA patients and mice (6, 7, 15, 16). Therefore, increasing the expression of intact SMN protein may have clinically therapeutic effects on SMA patients. In this study, we found that sodium butyrate treatment of human SMA lymphoid cell lines increased the expression of exon 7-containing SMN protein from the SMN2 gene. The mechanism by which sodium butyrate affects SMN protein expression of the SMN2 gene involves a change in its RNA splicing pattern of the gene. After sodium butyrate stimulation in vitro and in vivo, the transcription pattern of SMN2 changed to an SMN1-like transcription pattern, which was nearly identical to the SMN pattern in healthy individuals. These findings may have important implications regarding the treatment of SMA patients.
Sodium butyrate has been shown to induce differentiation and
apoptosis (23, 24). There is evidence that sodium butyrate may
act at the transcription level by increasing the acetylation of
histones, thereby releasing constraints on the DNA template and
reactivating a number of genes (25, 26). Sodium butyrate also increases
the expression of fetal-globin genes in adult baboons, humans, and
other animals (27-29). In utero infusions of butyrate delay
the developmental switch from
- to
-globin gene expression in
sheep fetuses (29). These effects of butyrate may occur through the
inhibition of histone deacetylase (25, 26, 29, 30). In the case of
SMN, sodium butyrate may acetylate nucleosomal DNA and
release other factors that control alternating splicing of exon 7 of
the SMN2 gene.
We demonstrated that sodium butyrate induced two specific SR proteins involved in inclusion of exon 7 for full-length SMN expression of the SMN2 gene. These reactions were blocked by either the mitogen-activated protein kinase inhibitor or a phosphatase inhibitor. Our results strongly support that SR proteins are involved in SMN2 exon 7 inclusion after sodium butyrate treatment.
Approximately 15% of all mutations that cause genetic diseases result from the defective splicing of pre-mRNA (31). A number of these mutations do not alter consensus splice sites or generate missense or nonsense mutations, yet do affect splice site selection (32, 33). These mutations may cause skipping of exon(s) by disrupting the splicing enhancer(s). Our findings suggest that an approach similar to that used in our study may be effective in treating these kinds of genetic diseases as well.
Most SMA patients gradually develop clinical symptoms after birth. We
previously demonstrated that the SMN2 in SMA-like mice expressed only a decreased or nearly normal amount of intact SMN protein in most tissues, except in motor neurons (15). This is why SMA
is a disease that directly affects only the motor neurons. The motor
neuron-specific splicing factors regulating the inclusion/exclusion of exon 7 in the fetal stage, which are shut down in the spinal cord
after birth, may account for the specific defect present in SMA. These
factors also may play an important role in genotypic and phenotypic
discrepancies. Sodium butyrate inhibits the deacetylation of these
phenotype-related genes, modifying the clinical symptoms of SMA in a
fashion similar to the mechanism involved in fetal hemoglobin gene
expression (25, 26, 30). However, there is a major difference between
modification of the
-globin gene and the SMN2 gene after
butyrate reaction. The transcription of the SMN2 gene is
modified through the alternative splicing of exon 7 rather than
directly through the inhibition of histone deacetylation. Gene
modification after sodium butyrate treatment not only increased the
transcription of SMN2, but also changed the splicing pattern
of exon 7 of SMN2 whereas the splicing pattern of exons 3 or
5 remained unchanged. This may be caused by the influence on exon 7 inclusion of specific SR proteins that are induced by sodium butyrate treatment.
Sodium butyrate and related compounds have been used clinically to treat patients with sickle cell anemia and thalassemia for several years (34, 35). The pharmacokinetics and toxicities of sodium butyrate are well documented; its toxicity is low and has been well tolerated in both human and animal studies (34-37). Our findings suggest that sodium butyrate is an excellent candidate for the treatment of human SMA. In the present study, although sodium butyrate had a therapeutic effect on SMA symptoms, a number of severe types of SMA mice were born to sodium butyrate-treated pregnant mice and a few type 2 mice showed poor response after sodium butyrate treatment. This may have been due to incomplete treatment, or because the increase in the amount of intact SMN protein after treatment was unable to sufficiently compensate, to provide the minimal requirement for motor neuron survival. It is also possible that the timing of treatment was too late after day 15 of pregnancy.
In summary, SMA lymphoid cell lines and SMA-like mice were used to explore possible medication for the treatment of human SMA in this study. We found that sodium butyrate can effectively treat SMA-like mice by changing the expression pattern of SMN2 and increasing the amount of full-length mRNA of SMN2 both in vitro and in vivo. The methods developed in this study may be useful in screening other candidate drugs for SMA treatment. We also demonstrated that the mechanism of action of sodium butyrate involves a modification of the splicing of exon 7 of the SMN2 gene under the regulation of SR proteins. This study shows that a deacetylase inhibitor can specifically modulate a disease-related defect gene to change its expression pattern, resulting in amelioration of the related symptoms. Our methods also may provide a useful approach for the treatment of other splicing defect-related diseases (31, 38).
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Acknowledgements |
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We thank Dr. K. T. Yeh for preparation and analysis of histopathological samples; S. S. Potter, K. B. Choo, and Y. T. Chen for their critical reading of the manuscript; and W. L. Chan for editing the manuscript. This work was supported in part by Research Grants NSC-87-2311-B-001-041-B25 and NSC-89-2320-B-039-051 from the National Science Council of Taiwan and Grant NHRI-EX90-9029SP from the National Health Research Institute, Taiwan.
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Abbreviations |
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SMA, spinal muscular atrophy; SMN, survival motor neuron; RT-PCR, reverse transcriptase-PCR.
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Footnotes |
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To whom reprint requests should be addressed. E-mail:
d6781{at}www.cmch.org.tw or hungli{at}ccvax.sinica.edu.tw.
This paper was submitted directly (Track II) to the PNAS office.
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