Introducing ALZET?ew Model 2006 Pump  Sign up for PNAS Online eTocs
Link: Info for AuthorsLink: Editorial BoardLink: AboutLink: SubscribeLink: AdvertiseLink: ContactLink: Sitemap Link: PNAS Home
Proceedings of the National Academy of Sciences
Link: Current Issue "" Link: Archives "" Link: Online Submission ""  Link: Advanced Search



This Article
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a colleague
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My File Cabinet
Right arrow Download to citation manager
Right arrow Request Copyright Permission
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via CrossRef
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Kunkel, T. A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Kunkel, T. A.
Right arrowPubmed/NCBI databases
*Compound via MeSH
*Substance via MeSH
Social Bookmarking
 Add to CiteULike   Add to Complore   Add to Connotea   Add to Del.icio.us   Add to Digg  
What's this?

 Previous Article  | Table of Contents |  Next Article 

PNAS | January 15, 1985 | vol. 82 | no. 2 | 488-492
Copyright © 1985 by the National Academy of Sciences

Rapid and Efficient Site-Specific Mutagenesis without Phenotypic Selection

Thomas A. Kunkel

Several single-base substitution mutations have been introduced into the lacZalpha gene in cloning vector M13mp2, at 40-60% efficiency, in a rapid procedure requiring only transfection of the unfractionated products of standard in vitro mutagenesis reactions. Two simple additional treatments of the DNA, before transfection, produce a site-specific mutation frequency approaching 100%. The approach is applicable to phenotypically silent mutations in addition to those that can be selected. The high efficiency, approx 10-fold greater than that observed using current methods without enrichment procedures, is obtained by using a DNA template containing several uracil residues in place of thymine. This template has normal coding potential for the in vitro reactions typical of site-directed mutagenesis protocols but is not biologically active upon transfection into a wild-type (i.e., ung+) Escherichia coli host cell. Expression of the desired change, present in the newly synthesized non-uracil-containing covalently closed circular complementary strand, is thus strongly favored. The procedure has been applied to mutations introduced via both oligonucleotides and error-prone polymerization. In addition to its utility in changing DNA sequences, this approach can potentially be used to examine the biological consequences of specific lesions placed at defined positions within a gene.
Add to CiteULike CiteULike   Add to Complore Complore   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us   Add to Digg Digg    What's this?


This article has been cited by other articles in HighWire Press-hosted journals:


Home page
J. Biol. Chem.Home page
Y. Ma and S. S. Taylor
A Molecular Switch for Targeting between Endoplasmic Reticulum (ER) and Mitochondria: CONVERSION OF A MITOCHONDRIA-TARGETING ELEMENT INTO AN ER-TARGETING SIGNAL IN DAKAP1
J. Biol. Chem., April 25, 2008; 283(17): 11743 - 11751.
[Abstract] [Full Text] [PDF]


Home page
Antimicrob. Agents Chemother.Home page
A. Bellemare, N. Vernoux, D. Morisset, and Y. Bourbonnais
Human Pre-Elafin Inhibits a Pseudomonas aeruginosa-Secreted Peptidase and Prevents Its Proliferation in Complex Media
Antimicrob. Agents Chemother., February 1, 2008; 52(2): 483 - 490.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
C. L. Padgett and S. C. R. Lummis
The F-loop of the GABAA Receptor {gamma}2 Subunit Contributes to Benzodiazepine Modulation
J. Biol. Chem., February 1, 2008; 283(5): 2702 - 2708.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
B. J. Cuthbertson, Y. Liao, L. Birnbaumer, and P. J. Blackshear
Characterization of zfs1 as an mRNA-binding and -destabilizing Protein in Schizosaccharomyces pombe
J. Biol. Chem., February 1, 2008; 283(5): 2586 - 2594.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
A. R. Diaz, S. Stephenson, J. M. Green, V. M. Levdikov, A. J. Wilkinson, and M. Perego
Functional Role for a Conserved Aspartate in the Spo0E Signature Motif Involved in the Dephosphorylation of the Bacillus subtilis Sporulation Regulator Spo0A
J. Biol. Chem., February 1, 2008; 283(5): 2962 - 2972.
[Abstract] [Full Text] [PDF]


Home page
J BiochemHome page
Y.-T. Kim, H. Yoshida, M. Kojima, R. Kurita, W. Nishii, T. Muramatsu, H. Ito, S. J. Park, and K. Takahashi
The Effects of Mutations in the Carboxyl-Terminal Region on the Catalytic Activity of Escherichia coli Signal Peptidase I
J. Biochem., February 1, 2008; 143(2): 237 - 242.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
Y. Wang, T. W. Loo, M. C. Bartlett, and D. M. Clarke
Correctors Promote Maturation of Cystic Fibrosis Transmembrane Conductance Regulator (CFTR)-processing Mutants by Binding to the Protein
J. Biol. Chem., November 16, 2007; 282(46): 33247 - 33251.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
S. K. Ray and A. B. Leiter
The Basic Helix-Loop-Helix Transcription Factor NeuroD1 Facilitates Interaction of Sp1 with the Secretin Gene Enhancer
Mol. Cell. Biol., November 15, 2007; 27(22): 7839 - 7847.
[Abstract] [Full Text] [PDF]


Home page
Infect. Immun.Home page
T. J. Brickman and S. K. Armstrong
Impact of Alcaligin Siderophore Utilization on In Vivo Growth of Bordetella pertussis
Infect. Immun., November 1, 2007; 75(11): 5305 - 5312.
[Abstract] [Full Text] [PDF]


Home page
Plant Physiol.Home page
J. H. Doelling, A. R. Phillips, G. Soyler-Ogretim, J. Wise, J. Chandler, J. Callis, M. S. Otegui, and R. D. Vierstra
The Ubiquitin-Specific Protease Subfamily UBP3/UBP4 Is Essential for Pollen Development and Transmission in Arabidopsis
Plant Physiology, November 1, 2007; 145(3): 801 - 813.
[Abstract] [Full Text] [PDF]


Home page
J. Cell Biol.Home page
H. Tokuo, K. Mabuchi, and M. Ikebe
The motor activity of myosin-X promotes actin fiber convergence at the cell periphery to initiate filopodia formation
J. Cell Biol., October 22, 2007; 179(2): 229 - 238.
[Abstract] [Full Text] [PDF]


Home page
Am. J. Physiol. Lung Cell. Mol. Physiol.Home page
J. D. Roberts Jr., J.-D. Chiche, E. M. Kolpa, D. B. Bloch, and K. D. Bloch
cGMP-dependent protein kinase I interacts with TRIM39R, a novel Rpp21 domain-containing TRIM protein
Am J Physiol Lung Cell Mol Physiol, October 1, 2007; 293(4): L903 - L912.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
A. E. Gammie, N. Erdeniz, J. Beaver, B. Devlin, A. Nanji, and M. D. Rose
Functional Characterization of Pathogenic Human MSH2 Missense Mutations in Saccharomyces cerevisiae
Genetics, October 1, 2007; 177(2): 707 - 721.
[Abstract] [Full Text] [PDF]


Home page
J. Virol.Home page
H. E. Klei, K. Kish, P.-F. M. Lin, Q. Guo, J. Friborg, R. E. Rose, Y. Zhang, V. Goldfarb, D. R. Langley, M. Wittekind, et al.
X-Ray Crystal Structures of Human Immunodeficiency Virus Type 1 Protease Mutants Complexed with Atazanavir
J. Virol., September 1, 2007; 81(17): 9525 - 9535.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
K. L. Price, K. S. Millen, and S. C. R. Lummis
Transducing Agonist Binding to Channel Gating Involves Different Interactions in 5-HT3 and GABAC Receptors
J. Biol. Chem., August 31, 2007; 282(35): 25623 - 25630.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
H. S. Pettersen, O. Sundheim, K. M. Gilljam, G. Slupphaug, H. E. Krokan, and B. Kavli
Uracil-DNA glycosylases SMUG1 and UNG2 coordinate the initial steps of base excision repair by distinct mechanisms
Nucleic Acids Res., June 9, 2007; 35(12): 3879 - 3892.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
S. Schauble, C. C. King, M. Darshi, A. Koller, K. Shah, and S. S. Taylor
Identification of ChChd3 as a Novel Substrate of the cAMP-dependent Protein Kinase (PKA) Using an Analog-sensitive Catalytic Subunit
J. Biol. Chem., May 18, 2007; 282(20): 14952 - 14959.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
J. Bitinaite, M. Rubino, K. H. Varma, I. Schildkraut, R. Vaisvila, and R. Vaiskunaite
USERTM friendly DNA engineering and cloning method by uracil excision
Nucleic Acids Res., March 19, 2007; 35(6): 1992 - 2002.
[Abstract] [Full Text] [PDF]


Home page
Protein Eng Des SelHome page
A. Bichet, F. Hannemann, M. Rekowski, and R. Bernhardt
A new application of the yeast two-hybrid system in protein engineering
Protein Eng. Des. Sel., March 1, 2007; 20(3): 117 - 123.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
P. Bist, U. K. Madhusoodanan, and D. N. Rao
A Mutation in the Mod Subunit of EcoP15I Restriction Enzyme Converts the DNA Methyltransferase to a Site-specific Endonuclease
J. Biol. Chem., February 9, 2007; 282(6): 3520 - 3530.
[Abstract] [Full Text] [PDF]


Home page
J. Virol.Home page
C.-C. Lu, H.-T. Huang, J.-T. Wang, G. Slupphaug, T.-K. Li, M.-C. Wu, Y.-C. Chen, C.-P. Lee, and M.-R. Chen
Characterization of the Uracil-DNA Glycosylase Activity of Epstein-Barr Virus BKRF3 and Its Role in Lytic Viral DNA Replication
J. Virol., February 1, 2007; 81(3): 1195 - 1208.
[Abstract] [Full Text] [PDF]


Home page
GENES CELLSHome page
T. A. Kohda, K. Tanaka, M. Konomi, M. Sato, M. Osumi, and M. Yamamoto
Fission yeast autophagy induced by nitrogen starvation generates a nitrogen source that drives adaptation processes.
Genes Cells, February 1, 2007; 12(2): 155 - 170.
[Abstract] [Full Text] [PDF]


Home page
J. Neurosci.Home page
C. L. Padgett, A. P. Hanek, H. A. Lester, D. A. Dougherty, and S. C. R. Lummis
Unnatural Amino Acid Mutagenesis of the GABAA Receptor Binding Site Residues Reveals a Novel Cation-{pi} Interaction between GABA and {beta}2Tyr97
J. Neurosci., January 24, 2007; 27(4): 886 - 892.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
V. M. Milenkovic, A. Rivera, F. Horling, and B. H. F. Weber
Insertion and Topology of Normal and Mutant Bestrophin-1 in the Endoplasmic Reticulum Membrane
J. Biol. Chem., January 12, 2007; 282(2): 1313 - 1321.
[Abstract] [Full Text] [PDF]


Home page
J. Gen. Virol.Home page
R. Girnary, L. King, L. Robinson, R. Elston, and I. Brierley
Structure-function analysis of the ribosomal frameshifting signal of two human immunodeficiency virus type 1 isolates with increased resistance to viral protease inhibitors
J. Gen. Virol., January 1, 2007; 88(1): 226 - 235.
[Abstract] [Full Text] [PDF]


Home page
Mol. Biol. CellHome page
L. Goffin, S. Vodala, C. Fraser, J. Ryan, M. Timms, S. Meusburger, B. Catimel, E. C. Nice, P. A. Silver, C.-Y. Xiao, et al.
The Unfolded Protein Response Transducer Ire1p Contains a Nuclear Localization Sequence Recognized by Multiple beta Importins
Mol. Biol. Cell, December 1, 2006; 17(12): 5309 - 5323.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
C. D. Thanos, W. L. DeLano, and J. A. Wells
Hot-spot mimicry of a cytokine receptor by a small molecule
PNAS, October 17, 2006; 103(42): 15422 - 15427.
[Abstract] [Full Text] [PDF]


Home page
Mol. Biol. CellHome page
W. Wen, L. Chen, H. Wu, X. Sun, M. Zhang, and D. K. Banfield
Identification of the Yeast R-SNARE Nyv1p as a Novel Longin Domain-containing Protein
Mol. Biol. Cell, October 1, 2006; 17(10): 4282 - 4299.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
W. Qiu, Y.-T. Kao, L. Zhang, Y. Yang, L. Wang, W. E. Stites, D. Zhong, and A. H. Zewail
Protein surface hydration mapped by site-specific mutations
PNAS, September 19, 2006; 103(38): 13979 - 13984.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
S. Poggio, A. Osorio, G. Dreyfus, and L. Camarena
Transcriptional Specificity of RpoN1 and RpoN2 Involves Differential Recognition of the Promoter Sequences and Specific Interaction with the Cognate Activator Proteins
J. Biol. Chem., September 15, 2006; 281(37): 27205 - 27215.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
N. J. Harrison and S. C. R. Lummis
Locating the Carboxylate Group of GABA in the Homomeric rho GABAA Receptor Ligand-binding Pocket
J. Biol. Chem., August 25, 2006; 281(34): 24455 - 24461.
[Abstract] [Full Text] [PDF]


Home page
GENES CELLSHome page
H. Takaki, Y. Minoda, K. Koga, G. Takaesu, A. Yoshimura, and T. Kobayashi
TGF-beta1 suppresses IFN-gamma-induced NO production in macrophages by suppressing STAT1 activation and accelerating iNOS protein degradation.
Genes Cells, August 1, 2006; 11(8): 871 - 882.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
S. J. Deminoff, S. C. Howard, A. Hester, S. Warner, and P. K. Herman
Using Substrate-Binding Variants of the cAMP-Dependent Protein Kinase to Identify Novel Targets and a Kinase Domain Important for Substrate Interactions in Saccharomyces cerevisiae
Genetics, August 1, 2006; 173(4): 1909 - 1917.
[Abstract] [Full Text] [PDF]


Home page
Plant CellHome page
A. Hirner, F. Ladwig, H. Stransky, S. Okumoto, M. Keinath, A. Harms, W. B. Frommer, and W. Koch
Arabidopsis LHT1 Is a High-Affinity Transporter for Cellular Amino Acid Uptake in Both Root Epidermis and Leaf Mesophyll
PLANT CELL, August 1, 2006; 18(8): 1931 - 1946.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
S. Cestele, V. Yarov-Yarovoy, Y. Qu, F. Sampieri, T. Scheuer, and W. A. Catterall
Structure and Function of the Voltage Sensor of Sodium Channels Probed by a beta-Scorpion Toxin
J. Biol. Chem., July 28, 2006; 281(30): 21332 - 21344.
[Abstract] [Full Text] [PDF]


Home page
J BiochemHome page
W. Cun, M. Hong, L.-D. Liu, C.-H. Dong, J. Luo, and Q.-H. Li
Structural and functional characterization of herpes simplex virus 1 immediate-early protein infected-cell protein 22.
J. Biochem., July 1, 2006; 140(1): 67 - 73.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
A. J. Thompson, C. L. Padgett, and S. C. R. Lummis
Mutagenesis and Molecular Modeling Reveal the Importance of the 5-HT3 Receptor F-loop
J. Biol. Chem., June 16, 2006; 281(24): 16576 - 16582.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
D. Paus and G. Winter
Mapping epitopes and antigenicity by site-directed masking
PNAS, June 13, 2006; 103(24): 9172 - 9177.
[Abstract] [Full Text] [PDF]


Home page
J. Gen. Virol.Home page
S. Paul and T. Michiels
Cardiovirus leader proteins are functionally interchangeable and have evolved to adapt to virus replication fitness.
J. Gen. Virol., May 1, 2006; 87(Pt 5): 1237 - 1246.
[Abstract] [Full Text] [PDF]


Home page
CSHL ProtocolsHome page
J. Sambrook and D. W. Russell
Preparation of Uracil-containing Single-stranded Bacteriophage M13 DNA
CSH Protocols, May 1, 2006; 2006(2): pdb.prot3811 - pdb.prot3811.
[Full Text]


Home page
CSHL ProtocolsHome page
J. Sambrook and D. W. Russell
Oligonucleotide-directed Mutagenesis of Single-stranded DNA
CSH Protocols, May 1, 2006; 2006(2): pdb.prot3817 - pdb.prot3817.
[Full Text]


Home page
GlycobiologyHome page
H. Ihara, Y. Ikeda, and N. Taniguchi
Reaction mechanism and substrate specificity for nucleotide sugar of mammalian {alpha}1,6-fucosyltransferase--a large-scale preparation and characterization of recombinant human FUT8
Glycobiology, April 1, 2006; 16(4): 333 - 342.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
A. J. Thompson, P.-L. Chau, S. L. Chan, and S. C. R. Lummis
Unbinding Pathways of an Agonist and an Antagonist from the 5-HT3 Receptor
Biophys. J., March 15, 2006; 90(6): 1979 - 1991.
[Abstract] [Full Text] [PDF]


Home page
RNAHome page
I. A. TURNER, C. M. NORMAN, M. J. CHURCHER, and A. J. NEWMAN
Dissection of Prp8 protein defines multiple interactions with crucial RNA sequences in the catalytic core of the spliceosome
RNA, March 1, 2006; 12(3): 375 - 386.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
Y. Kida, F. Morimoto, K. Mihara, and M. Sakaguchi
Function of Positive Charges Following Signal-Anchor Sequences during Translocation of the N-terminal Domain
J. Biol. Chem., January 13, 2006; 281(2): 1152 - 1158.
[Abstract] [Full Text] [PDF]


Home page
J BiochemHome page
Y. Ishikura, S. Tsuzuki, O. Takahashi, C. Tokuda, R. Nakanishi, T. Shinoda, and H. Taguchi
Recognition Site for the Side Chain of 2-Ketoacid Substrate in D-Lactate Dehydrogenase
J. Biochem., December 1, 2005; 138(6): 741 - 749.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
Y. V. Budovskaya, J. S. Stephan, S. J. Deminoff, and P. K. Herman
An evolutionary proteomics approach identifies substrates of the cAMP-dependent protein kinase
PNAS, September 27, 2005; 102(39): 13933 - 13938.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
T. Hibino
Nonfixed Relationship of the Michaelis Constant and Maximum Velocity with Their Corresponding Rate Constants
J. Biol. Chem., September 2, 2005; 280(35): 30671 - 30680.
[Abstract] [Full Text] [PDF]


Home page
J EndocrinolHome page
M. Alba and R. Salvatori
Naturally-occurring missense mutations in the human growth hormone-releasing hormone receptor alter ligand binding
J. Endocrinol., September 1, 2005; 186(3): 515 - 521.
[Abstract] [Full Text] [PDF]


Home page
Protein Eng Des SelHome page
S. E. Permyakov, G. I. Makhatadze, R. Owenius, V. N. Uversky, C. L. Brooks, E. A. Permyakov, and L. J. Berliner
How to improve nature: study of the electrostatic properties of the surface of {alpha}-lactalbumin
Protein Eng. Des. Sel., September 1, 2005; 18(9): 425 - 433.
[Abstract] [Full Text] [PDF]


Home page
J. Immunol.Home page
M. Yoneyama, M. Kikuchi, K. Matsumoto, T. Imaizumi, M. Miyagishi, K. Taira, E. Foy, Y.-M. Loo, M. Gale Jr, S. Akira, et al.
Shared and Unique Functions of the DExD/H-Box Helicases RIG-I, MDA5, and LGP2 in Antiviral Innate Immunity
J. Immunol., September 1, 2005; 175(5): 2851 - 2858.
[Abstract] [Full Text] [PDF]


Home page
Mol. Biol. CellHome page
S. W. Clark and M. D. Rose
Alanine Scanning of Arp1 Delineates a Putative Binding Site for Jnm1/Dynamitin and Nip100/p150Glued
Mol. Biol. Cell, September 1, 2005; 16(9): 3999 - 4012.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
F. Allemand, N. Mathy, D. Brechemier-Baey, and C. Condon
The 5S rRNA maturase, ribonuclease M5, is a Toprim domain family member
Nucleic Acids Res., August 2, 2005; 33(13): 4368 - 4376.
[Abstract] [Full Text] [PDF]


Home page
Plant Physiol.Home page
T. Kanno, A. Komatsu, K. Kasai, J. G. Dubouzet, M. Sakurai, Y. Ikejiri-Kanno, K. Wakasa, and Y. Tozawa
Structure-Based in Vitro Engineering of the Anthranilate Synthase, a Metabolic Key Enzyme in the Plant Tryptophan Pathway
Plant Physiology, August 1, 2005; 138(4): 2260 - 2268.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
C. Li, J. Zienkiewicz, and J. Hawiger
Interactive Sites in the MyD88 Toll/Interleukin (IL) 1 Receptor Domain Responsible for Coupling to the IL1{beta} Signaling Pathway
J. Biol. Chem., July 15, 2005; 280(28): 26152 - 26159.
[Abstract] [Full Text] [PDF]


Home page
Eukaryot CellHome page
M. Wilhelm and F.-X. Wilhelm
Role of Integrase in Reverse Transcription of the Saccharomyces cerevisiae Retrotransposon Ty1
Eukaryot. Cell, June 1, 2005; 4(6): 1057 - 1065.
[Abstract] [Full Text] [PDF]


Home page
Mol. Biol. CellHome page
K. M. Lee, I. Miklos, H. Du, S. Watt, Z. Szilagyi, J. E. Saiz, R. Madabhushi, C. J. Penkett, M. Sipiczki, J. Bahler, et al.
Impairment of the TFIIH-associated CDK-activating Kinase Selectively Affects Cell Cycle-regulated Gene Expression in Fission Yeast
Mol. Biol. Cell, June 1, 2005; 16(6): 2734 - 2745.
[Abstract] [Full Text] [PDF]