Haplotype structure and selection of the MDM2 oncogene in humans
Atwal et al. 10.1073/pnas.0610998104.
Supporting Information
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SI Table 8
Table 4. Coriell ID codes for the cell lines used in the present Celera study and in ref. 1
|
GM # |
|
GM00130 |
|
GM00131 |
|
GM00333 |
|
GM00546 |
|
GM00607 |
|
GM00893 |
|
GM00946 |
|
GM01310 |
|
GM01805 |
|
GM01814 |
|
GM01953 |
|
GM01954 |
|
GM01990 |
|
GM02254 |
|
GM03657 |
|
GM03798 |
|
GM05920 |
|
GM08428 |
|
GM09947 |
|
GM09948 |
|
GM10924 |
|
GM10959 |
|
GM12593 |
|
GM14439 |
|
GM14441 |
|
GM14448 |
|
GM14454 |
|
GM14464 |
|
GM14474 |
|
GM14476 |
|
GM14480 |
|
GM14501 |
|
GM14503 |
|
GM14511 |
|
GM14529 |
|
GM14532 |
|
GM14535 |
|
GM14537 |
|
GM14548 |
|
GM14583 |
|
GM14632 |
|
GM14649 |
|
GM14661 |
|
GM14663 |
|
GM14665 |
|
GM14672 |
|
GM14700 |
|
GM14772 |
|
GM17102 |
|
GM17103 |
|
GM17104 |
|
GM17105 |
|
GM17106 |
|
GM17107 |
|
GM17108 |
|
GM17109 |
|
GM17111 |
|
GM17112 |
|
GM17114 |
|
GM17115 |
|
GM17117 |
|
GM17118 |
|
GM17119 |
|
GM17120 |
|
GM17121 |
|
GM17122 |
|
GM17123 |
|
GM17124 |
|
GM17125 |
|
GM17126 |
|
GM17127 |
|
GM17128 |
|
GM17130 |
|
GM17131 |
|
GM17132 |
|
GM17159 |
|
GM17160 |
|
GM17161 |
|
GM17162 |
|
GM17163 |
|
GM17164 |
|
GM17174 |
|
GM17200 |
|
GM17201 |
|
GM17202 |
|
GM17203 |
|
GM17204 |
|
GM17205 |
|
GM17206 |
|
GM17207 |
|
GM17208 |
|
GM17209 |
|
GM17210 |
|
GM17211 |
|
GM17212 |
|
GM17213 |
|
GM17214 |
|
GM17215 |
|
GM17216 |
|
GM17217 |
|
GM17218 |
|
GM17219 |
|
GM17220 |
|
GM17221 |
|
GM17223 |
|
GM17224 |
|
GM17226 |
|
GM17229 |
|
GM17230 |
|
GM17234 |
|
GM17236 |
|
GM17238 |
|
GM17239 |
1. Harris SL, Gil G, Robins H, Hu W, Hirshfield K, Bond E, Bond G, Levine AJ (2005) Proc Natl Sci USA 102:16297-16302
Table 5. Coriell ID codes of duplicate cell lines used in the present Celera study and in ref. 1
|
GM00130=GM17201 |
|
GM00131=GM17202 |
|
GM00546=GM17204 |
|
GM00607=GM17206 |
|
GM00893=GM17208 |
|
GM00946=GM17210 |
|
GM01310=GM17212 |
|
GM01805=GM17213 |
|
GM01814=GM17215 |
|
GM01953=GM17216 |
|
GM01954=GM17217 |
|
GM01990=GM17218 |
|
GM02254=GM17221 |
|
GM05920=GM17224 |
|
GM09947=GM17234 |
|
GM10959=GM17236 |
|
GM12593=GM17238 |
|
GM14441=GM17111 |
|
GM14454=GM17112 |
|
GM14537=GM17114 |
|
GM14583=GM17115 |
|
GM14772=GM17125 |
1. Harris SL, Gil G, Robins H, Hu W, Hirshfield K, Bond E, Bond G, Levine AJ (2005) Proc Natl Sci USA 102:16297-302
Table 6. Corrected genotypes of SNP309 in cell lines used in the present Celera study and in ref. 1
|
GM # |
SNP 309 genotype |
|
GM00130 |
TG |
|
GM00131 |
TT |
|
GM00333 |
TT |
|
GM00546 |
TT |
|
GM00607 |
TG |
|
GM00893 |
TG |
|
GM00946 |
TG |
|
GM01310 |
GG |
|
GM01805 |
TG |
|
GM01814 |
TT |
|
GM01953 |
TT |
|
GM01954 |
TG |
|
GM01990 |
TG |
|
GM02254 |
TG |
|
GM03657 |
TG |
|
GM03798 |
GG |
|
GM05920 |
TG |
|
GM08428 |
TT |
|
GM09947 |
TT |
|
GM09948 |
TG |
|
GM10924 |
TG |
|
GM10959 |
GG |
|
GM12593 |
TT |
|
GM14439 |
TT |
|
GM14441 |
TT |
|
GM14448 |
TT |
|
GM14454 |
TT |
|
GM14464 |
TT |
|
GM14474 |
TT |
|
GM14476 |
TT |
|
GM14480 |
TT |
|
GM14501 |
TG |
|
GM14503 |
TG |
|
GM14511 |
TG |
|
GM14529 |
GG |
|
GM14532 |
TG |
|
GM14535 |
TT |
|
GM14537 |
TG |
|
GM14548 |
TG |
|
GM14583 |
TT |
|
GM14632 |
TT |
|
GM14649 |
TT |
|
GM14661 |
TT |
|
GM14663 |
TT |
|
GM14665 |
TT |
|
GM14672 |
TT |
|
GM14700 |
TT |
|
GM14772 |
TT |
|
GM17102 |
TT |
|
GM17103 |
TT |
|
GM17104 |
TT |
|
GM17105 |
TT |
|
GM17107 |
TT |
|
GM17108 |
TG |
|
GM17109 |
TT |
|
GM17117 |
TT |
|
GM17118 |
TT |
|
GM17119 |
TT |
|
GM17120 |
TT |
|
GM17121 |
TT |
|
GM17122 |
TT |
|
GM17123 |
TT |
|
GM17124 |
TT |
|
GM17126 |
TT |
|
GM17127 |
TT |
|
GM17128 |
TT |
|
GM17130 |
TT |
|
GM17131 |
TT |
|
GM17132 |
TT |
|
GM17159 |
TT |
|
GM17160 |
TG |
|
GM17161 |
TT |
|
GM17162 |
TG |
|
GM17163 |
TT |
|
GM17164 |
TG |
|
GM17174 |
TT |
|
GM17200 |
TT |
|
GM17203 |
TG |
|
GM17205 |
TG |
|
GM17207 |
TT |
|
GM17209 |
TG |
|
GM17211 |
TT |
|
GM17214 |
TT |
|
GM17219 |
TT |
|
GM17220 |
TG |
|
GM17223 |
GG |
|
GM17226 |
TT |
|
GM17229 |
GG |
|
GM17230 |
TT |
|
GM17239 |
GG |
1. Harris SL, Gil G, Robins H, Hu W, Hirshfield K, Bond E, Bond G, Levine AJ (2005) Proc Natl Acad Sci USA 102:16297-16302
Table 7. Common haplotype frequencies in Celera study
|
Haplotype ID |
Haplotype |
African-American freq. |
Caucasian freq. |
|
Cel_h1 |
ACTAACAGCAG |
0.154 |
--- |
|
Cel_h2 |
ACTAACAGCAT |
--- |
0.028 |
|
Cel_h3 |
ACTTATAGCAG |
0.120 |
--- |
|
Cel_h4 |
ACTTATAGCAT |
0.056 |
--- |
|
Cel_h5 |
ACTTATAGCGT |
0.121 |
0.026 |
|
Cel_h6 |
ACTTATGGCGT |
0.054 |
--- |
|
Cel_h7 |
ACGTGTGACAT |
0.104 |
0.427 |
|
Cel_h8 |
GCTTATAGCAG |
0.201 |
--- |
|
Cel_h9 |
GTTAACAGCAT |
0.056 |
0.314 |
|
Cel_h10 |
GTTTATGGCAG |
--- |
0.028 |
SNP309 is highlighted in boldface
|
Haplotype ID |
Haplotype |
Ashkenazi Jewish freq. |
|
She_h1 |
ATATAG |
0.061 |
|
She_h2 |
ATATCG |
0.016 |
|
She_h3 |
AGGTAG |
0.188 |
|
She_h4 |
AGGTCG |
0.059 |
|
She_h5 |
GTATAG |
0.107 |
|
She_h6 |
GTATCG |
0.015 |
|
She_h7 |
GTAGAA |
0.088 |
|
She_h8 |
GTAGCA |
0.424 |
This Article
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PNAS March 13, 2007 vol. 104 no. 11 4524-4529
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