Serendipitous backyard hybridization and the origin of crops

  1. Colin E. Hughes*,,
  2. Rajanikanth Govindarajulu,
  3. Ashley Robertson*,§,
  4. Denis L. Filer*,
  5. Stephen A. Harris*, and
  6. C. Donovan Bailey
  1. *Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, United Kingdom; and
  2. Department of Biology, New Mexico State University, P.O. Box 30001, Department 3AF, Las Cruces, NM 88003
  1. Edited by Dolores R. Piperno, Smithsonian Institution, Washington, DC, and approved July 13, 2007 (received for review March 18, 2007)

Abstract

Backyard gardens, dump heaps, and kitchen middens are thought to have provided important venues for early crop domestication via generation of hybrids between otherwise isolated plant species. However, this process has rarely been demonstrated empirically. For the majority of polyploid crops, it remains uncertain to what extent hybridization and polyploidization preceded domestication or were precipitated by human activities. Using archaeological, ethnobotanical, geographical, and genetic data, we investigate the extent and significance of predomestication cultivation, backyard sympatry, and spontaneous hybridization for the Mimosoid legume tree Leucaena, which is used as a food crop throughout south-central Mexico. We show that predomestication cultivation was widespread, involved numerous independent transitions from the wild to cultivation, and resulted in extensive artificial sympatry of 2–6 species locally and 13 species in total. Using chloroplast and rapidly evolving nuclear-encoded DNA sequences, we demonstrate that hybridization in Leucaena has been extensive and complex, spawning a diverse set of novel hybrids as a result of juxtaposition of species in cultivation. The scale and complexity of hybridization in Leucaena is significantly greater than that documented for any other Mexican plant domesticates so far. However, there are striking parallels between Leucaena and the other major Mexican perennial domesticates Agave and Opuntia, which show very similar domestication via backyard hybridization pathways. Our results suggest that backyard hybridization has played a central role in Mesoamerican crop domestication and demonstrate that the simple step of bringing species together in cultivation can provide a potent trigger for domestication.

Footnotes

  • To whom correspondence should be addressed. E-mail: colin.hughes{at}plants.ox.ac.uk
  • Author contributions: C.E.H., S.A.H., and C.D.B. designed research; C.E.H., R.G., A.R., and C.D.B. performed research; D.L.F. contributed new reagents/analytic tools; C.E.H., R.G., A.R., and C.D.B. analyzed data; and C.E.H. wrote the paper.

  • §Present address: School of Biological Sciences, University of Bristol, Woodland Road, Bristol BS8 1UG, United Kingdom.

  • The authors declare no conflict of interest.

  • This article is a PNAS Direct Submission.

  • Data deposition: The sequences reported in this paper have been deposited in the GenBank database (accession nos. EF643842EF644103 and EF682017EF682031).

  • This article contains supporting information online at www.pnas.org/cgi/content/full/0702193104/DC1.

  • L. pueblana and L. trichandra were treated as L. diversifolia subsp. stenocarpa by Zárate (19). Taxonomy here follows Hughes (24).

  • Abbreviation:
    S-C,
    south-central.
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