Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa
- Rebecca L. Vega Thurbera,b,1,
- Katie L. Barotta,
- Dana Halla,
- Hong Liua,
- Beltran Rodriguez-Muellera,
- Christelle Desnuesa,c,
- Robert A. Edwardsa,d,e,f,
- Matthew Haynesa,
- Florent E. Anglya,
- Linda Wegleya, and
- Forest L. Rohwera,e
- aDepartment of Biology,
- dComputational Sciences Research Center, and
- eCenter for Microbial Sciences, San Diego State University, San Diego, CA 92182;
- bDepartment of Biological Sciences, Florida International University, 3000 North East 151st, North Miami, FL 33181;
- cUnité des Rickettsies, Unite Mixte de Recherche, Centre National de la Recherche Scientifique 6020. Faculté de Médecine de la Timone, 13385 Marseille, France; and
- fMathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439
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Communicated by Baruch S. Blumberg, Fox Chase Cancer Center, Philadelphia, PA, September 11, 2008 (received for review April 25, 2008)
Abstract
During the last several decades corals have been in decline and at least one-third of all coral species are now threatened with extinction. Coral disease has been a major contributor to this threat, but little is known about the responsible pathogens. To date most research has focused on bacterial and fungal diseases; however, viruses may also be important for coral health. Using a combination of empirical viral metagenomics and real-time PCR, we show that Porites compressa corals contain a suite of eukaryotic viruses, many related to the Herpesviridae. This coral-associated viral consortium was found to shift in response to abiotic stressors. In particular, when exposed to reduced pH, elevated nutrients, and thermal stress, the abundance of herpes-like viral sequences rapidly increased in 2 separate experiments. Herpes-like viral sequences were rarely detected in apparently healthy corals, but were abundant in a majority of stressed samples. In addition, surveys of the Nematostella and Hydra genomic projects demonstrate that even distantly related Cnidarians contain numerous herpes-like viral genes, likely as a result of latent or endogenous viral infection. These data support the hypotheses that corals experience viral infections, which are exacerbated by stress, and that herpes-like viruses are common in Cnidarians.
Footnotes
- 1To whom correspondence should be addressed. E-mail: rvegathurber{at}gmail.com
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Author contributions: R.L.V.T. and F.L.R. designed research; R.L.V.T. and K.L.B. performed research; R.L.V.T., H.L., B.R.-M., C.D., R.A.E., M.H., F.E.A., and L.K. contributed new reagents/analytic tools; R.L.V.T., D.H., L.W., H.L., B.R.-M., C.D., R.A.E., and F.E.A. analyzed data; and R.L.V.T. wrote the paper.
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The authors declare no conflict of interest.
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Data deposition: The sequences reported in this paper have been deposited in the GenBank database (genome project and accession nos. 28415, 28417, 28419, 28421, 28423, and 28425 and EU660955).
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This article contains supporting information online at www.pnas.org/cgi/content/full/0808985105/DCSupplemental.
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Freely available online through the PNAS open access option.
- © 2008 by The National Academy of Sciences of the USA










