Crystal structures of the noncatalytic domains of ADAMTS13 reveal multiple discontinuous exosites for von Willebrand factor

  1. Masashi Akiyamaa,1,
  2. Soichi Takedaa,1,2,
  3. Koichi Kokamea,
  4. Junichi Takagib and
  5. Toshiyuki Miyataa,2
  1. aNational Cardiovascular Center Research Institute, Suita, Osaka 565-8565, Japan; and
  2. bLaboratory of Protein Synthesis and Expression, Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan
  1. Edited by Philip W. Majerus, Washington University Medical School, St. Louis, MO, and approved September 16, 2009

  2. 1M.A. and S.T. contributed equally to this work. (received for review August 27, 2009)

Abstract

ADAMTS13 specifically cleaves plasma von Willebrand factor (VWF) and thereby controls VWF-mediated platelet thrombus formation. Severe deficiencies in ADAMTS13 can cause life-threatening thrombotic thrombocytopenic purpura. Here, we determined 2 crystal structures of ADAMTS13-DTCS (residues 287–685), an exosite-containing human ADAMTS13 fragment, at 2.6-Å and 2.8-Å resolution. The structures revealed folding similarities between the disintegrin-like (D) domain and the N-terminal portion of the cysteine-rich domain (designated the CA domain). The spacer (S) domain forms a globular functional unit with a 10-stranded β-sandwich fold that has multiple interaction sites with the CA domain. We expressed 25 structure-based mutants of ADAMTS13-MDTCS (residues 75–685) and measured their enzymatic activity. We identified 3 VWF-binding exosites on the linearly aligned discontinuous surfaces of the D, CA, and S domains traversing the W-shaped molecule. Since the MDTCS domains are conserved among ADAMTS family proteins, the structural framework of the multiple enzyme-substrate interactions identified in the ADAMTS13-VWF system provides the basis for a common substrate recognition mode in this class of proteinases.

Footnotes

  • 2To whom correspondence may be addressed. E-mail: stakeda{at}ri.ncvc.go.jp or miyata{at}ri.ncvc.go.jp
  • Author contributions: M.A., S.T., K.K., J.T., and T.M. designed research; M.A. and S.T. performed research; M.A., S.T., and K.K. analyzed data; and M.A., S.T., and T.M. wrote the paper.

  • The authors declare no conflict of interest.

  • This article is a PNAS Direct Submission.

  • Data deposition: The atomic coordinates and structure factors have been deposited in Protein Data Bank, www.pdb.org [PDB ID codes 3GHM (form-1 ADAMTS13-DTCS) and 3GHN (form-2 ADAMTS13-DTCS)].

  • This article contains supporting information online at www.pnas.org/cgi/content/full/0909755106/DCSupplemental.

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