Crystal structures of the noncatalytic domains of ADAMTS13 reveal multiple discontinuous exosites for von Willebrand factor
- aNational Cardiovascular Center Research Institute, Suita, Osaka 565-8565, Japan; and
- bLaboratory of Protein Synthesis and Expression, Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan
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Edited by Philip W. Majerus, Washington University Medical School, St. Louis, MO, and approved September 16, 2009
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↵1M.A. and S.T. contributed equally to this work. (received for review August 27, 2009)
Abstract
ADAMTS13 specifically cleaves plasma von Willebrand factor (VWF) and thereby controls VWF-mediated platelet thrombus formation. Severe deficiencies in ADAMTS13 can cause life-threatening thrombotic thrombocytopenic purpura. Here, we determined 2 crystal structures of ADAMTS13-DTCS (residues 287–685), an exosite-containing human ADAMTS13 fragment, at 2.6-Å and 2.8-Å resolution. The structures revealed folding similarities between the disintegrin-like (D) domain and the N-terminal portion of the cysteine-rich domain (designated the CA domain). The spacer (S) domain forms a globular functional unit with a 10-stranded β-sandwich fold that has multiple interaction sites with the CA domain. We expressed 25 structure-based mutants of ADAMTS13-MDTCS (residues 75–685) and measured their enzymatic activity. We identified 3 VWF-binding exosites on the linearly aligned discontinuous surfaces of the D, CA, and S domains traversing the W-shaped molecule. Since the MDTCS domains are conserved among ADAMTS family proteins, the structural framework of the multiple enzyme-substrate interactions identified in the ADAMTS13-VWF system provides the basis for a common substrate recognition mode in this class of proteinases.
Footnotes
- 2To whom correspondence may be addressed. E-mail: stakeda{at}ri.ncvc.go.jp or miyata{at}ri.ncvc.go.jp
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Author contributions: M.A., S.T., K.K., J.T., and T.M. designed research; M.A. and S.T. performed research; M.A., S.T., and K.K. analyzed data; and M.A., S.T., and T.M. wrote the paper.
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The authors declare no conflict of interest.
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This article is a PNAS Direct Submission.
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Data deposition: The atomic coordinates and structure factors have been deposited in Protein Data Bank, www.pdb.org [PDB ID codes 3GHM (form-1 ADAMTS13-DTCS) and 3GHN (form-2 ADAMTS13-DTCS)].
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This article contains supporting information online at www.pnas.org/cgi/content/full/0909755106/DCSupplemental.










