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# Fourth class of convex equilateral polyhedron with polyhedral symmetry related to fullerenes and viruses

Edited by Patrick Fowler, The University of Sheffield, Sheffield, United Kingdom, and accepted by the Editorial Board January 7, 2014 (received for review June 10, 2013)

## Significance

The Greeks described two classes of convex equilateral polyhedron with polyhedral symmetry, the Platonic (including the tetrahedron, octahedron, and icosahedron) and the Archimedean (including the truncated icosahedron with its soccer-ball shape). Johannes Kepler discovered a third class, the rhombic polyhedra. Some carbon fullerenes, inorganic cages, icosahedral viruses, protein complexes, and geodesic structures resemble these polyhedra. Here we add a fourth class, “Goldberg polyhedra.” Their small (corner) faces are regular 3gons, 4gons, or 5gons, whereas their planar 6gonal faces are equilateral but not equiangular. Unlike faceted viruses and related carbon fullerenes, the icosahedral Goldberg polyhedra are nearly spherical. The reasoning and techniques presented here will enable discovery of still more classes of convex equilateral polyhedron with polyhedral symmetry.

## Abstract

The three known classes of convex polyhedron with equal edge lengths and polyhedral symmetry––tetrahedral, octahedral, and icosahedral––are the 5 Platonic polyhedra, the 13 Archimedean polyhedra––including the truncated icosahedron or soccer ball––and the 2 rhombic polyhedra reported by Johannes Kepler in 1611. (Some carbon fullerenes, inorganic cages, icosahedral viruses, geodesic structures, and protein complexes resemble these fundamental shapes.) Here we add a fourth class, “Goldberg polyhedra,” which are also convex and equilateral. We begin by decorating each of the triangular facets of a tetrahedron, an octahedron, or an icosahedron with the *T* vertices and connecting edges of a “Goldberg triangle.” We obtain the unique set of internal angles in each planar face of each polyhedron by solving a system of *n* equations and *n* variables, where the equations set the dihedral angle discrepancy about different types of edge to zero, and the variables are a subset of the internal angles in 6gons. Like the faces in Kepler’s rhombic polyhedra, the 6gon faces in Goldberg polyhedra are equilateral and planar but not equiangular. We show that there is just a single tetrahedral Goldberg polyhedron, a single octahedral one, and a systematic, countable infinity of icosahedral ones, one for each Goldberg triangle. Unlike carbon fullerenes and faceted viruses, the icosahedral Goldberg polyhedra are nearly spherical. The reasoning and techniques presented here will enable discovery of still more classes of convex equilateral polyhedra with polyhedral symmetry.

Description and classification of geometric forms have occupied mathematicians since ancient times (1⇓⇓–4). The Greeks discovered the 5 Platonic polyhedra (including the icosahedron) and the 13 Archimedean polyhedra (3) [including the truncated icosahedron that resembles the soccer ball and Buckminsterfullerene (5)], all with regular faces. Kepler added two rhombic polyhedra (6, 7), one resembling ferritin cages (8, 9). These three classes of polyhedron, “equilateral” in that all their edges are of equal length, are all of the known convex equilateral polyhedra with polyhedral symmetry––icosahedral, octahedral, and tetrahedral. None of the face-regular Johnson solids have such symmetry (10).

In 1937, Michael Goldberg (11) [and independently Donald Caspar and Aaron Klug in 1962 (12)] invented a method for constructing cages with tetrahedral, octahedral, and icosahedral symmetry: Over a tiling of hexagons, draw equilateral triangles of different sizes and orientations (Fig. 1*A*). With the bottom edge spanning *h* whole tiles rightward and *k* whole tiles at 60°, each Goldberg triangle encloses only certain numbers *T* = *h*^{2} + *hk* + *k*^{2} of vertices (11⇓–13). Fig. 1*A* shows examples of the three groups of Goldberg triangles: the *h*, 0 group with *T* = 1, 4, and 9 vertices, the *h* = *k* group with *T* = 3 and 12, and the *h* ≠ *k* group with *T* = 7 and 13 (14). Now, use such a Goldberg triangle (e.g., *T* = 9 in Fig. 1*B*) to decorate each of the 4, 8, or 20 triangular facets of a tetrahedron, an octahedron, or an icosahedron (Fig. 1*C*), placing *T* vertices on each facet (Fig. 1*D*), and add additional edges that connect vertices across the boundaries of the facets (Fig. 1*E*) (11). The resulting tetrahedral, octahedral, or icosahedral cage (*SI Text*, Sec. 1) has 4*T*, 8*T*, or 20*T* trivalent vertices, 6gonal faces, and 4 triangles, 6 squares, or 12 pentagons as corner faces. However, at this point, edge lengths are unequal, and with nonplanar and coplanar faces, these cages are neither polyhedral nor convex (1).

For *T* = 1 and 3, we can transform the cages in Fig. 1*E* to ones with equal edge lengths (equilateral) and equal angles in 6gons (equiangular) (*SI Text*, Sec. 2.1). For *T* = 1 vertex per Goldberg triangle, this method produces three Platonic solids––the tetrahedron, the cube, and the dodecahedron. For *T* = 3, this method produces three Archimedean solids––the truncated tetrahedron, the truncated octahedron, and the truncated icosahedron. These cages are geometrically polyhedral because their faces are planar (1) and convex because they bulge outward at every vertex.

Could similarly symmetric convex equilateral polyhedra be created from Goldberg triangles with *T* > 3? We show that no such polyhedra are possible if the transformation requires both equilaterality and equiangularity. Even if the transformation merely encourages equal internal angles (*SI Text*, Sec. 2.1), the resulting “merely equilateral”––equilateral but not quite equiangular––tetrahedral, octahedral, and icosahedral cages (e.g., Fig. 2 *A–E*, *Left* and Fig. S1) have nonplanar 6gons, either “boat-” or “chair”-shaped (Fig. 2*F*), and are thus not polyhedral (1). Here, we show that the difference––convex polyhedra with planar 6gons for *T* = 1 and *T* = 3 but nonpolyhedral cages with nonplanar 6gons for *T* > 3––is due to the presence of edges with dihedral angle discrepancy (DAD) (15⇓⇓–18). We then show we can null all of the DADs and thus create a fourth class of equilateral convex polyhedron with polyhedral symmetry that we call “Goldberg polyhedra.”

## Results

### DAD.

In Fig. 3*A* the dihedral angle *A* about the blue edge is the angle between the two flanking planes (green and pink), each plane defined by three points. For the trivalent vertex, the cosine of *A* is determined by end angle *α* and side angles *β* and *γ* (Eq. **1**):In this equation, side angles *β* and *γ* are interchangeable.

The left and right parts of Fig. 3*B* show a blue edge flanked by two 4gons. For the 4gons to be planar, the dihedral angles about the blue edge at its left and right ends must be the same. For example, in the truncated icosahedron (Fig. 3*C*), the blue edge runs from a 566 vertex (with *α* = 108°, *β* = *γ* = 120°) to another 566 vertex, so the dihedral angles are the same 138.2° at both ends.

By contrast, in the icosahedral *T* = 4 cage (Fig. 3*D*), each of the edges radiating like a spoke from a (shaded) 5gon connects a 566 vertex to a 666 vertex marked by a red disk. If the 6gons were equiangular, with internal angles of 120°, dihedral angle *A* about the 566 end (with *α* = 108°, *β* = *γ* = 120°) would be 138.2°, whereas dihedral angle *D* about the 666 end (with *α* = *β* = *γ* = 120°) would be 180°. The difference, a DAD of 41.8°, would make the 6gons flanking that blue spoke edge nonplanar (15, 16). With nonplanar faces flanking all of its spoke edges, this *T* = 4 cage would not be a polyhedron. Note, however, that internal angles in nonplanar 6gons sum to less than 720° and thus cannot all be 120°.

All Goldberg triangles with *T* ≥ 4 have spoke edges radiating from their (shaded) corner faces to 666 vertices (Fig. 1*A*). Even with internal angles of ∼120° in nearly equiangular 6gons, as in merely equilateral cages (Fig. 2 *A–E*, *Left* and Fig. S2) (*SI Text*, Secs. 2.1 and 2.2), all spoke edges have DADs. Thus, all merely equilateral cages with *T* ≥ 4 are nonpolyhedral.

### Nulling DADs.

We introduced DAD to explain why the protein clathrin self-assembles into particular fullerene-shaped cages (19, 20). The mechanism we discovered, the head-to-tail exclusion rule (15⇓⇓–18), also explains the isolated-pentagon rule (21) observed for carbon fullerenes (22, 23). Here we use DAD for a fresh purpose.

We ask if by abandoning equiangularity (but maintaining equilaterality) in 6gons we can find a set of internal angles in the 6gons that would null the DADs about spoke (and other) edges and produce planar faces flanking those edges. [Symmetry already requires corner faces––3gons, 4gons, or 5gons––to be regular and thus equiangular (11).] Specifically, the DAD about the (blue) spoke edge in Fig. 3*D* would be zero if dihedral angles *D* and *A* were equal, thus Eq. **2**:For example, if internal angles *α*, *β*, and *γ* were, respectively, 60°, 135°, and 135° at one end of an edge and 90°, 90°, and 90° at the other, both *A* and *D* would be 90°, and the DAD would be zero.

Our first challenge then is to discover for cages with *T* ≥ 4 if it is possible to find a set of internal angles in 6gons that nulls all of the DADs in a cage and thus makes all of the faces planar. Our second challenge is to determine those internal angles––or conversely to show why such a set of internal angles does not exist.

### Labeling 6gons and Internal Angles.

We begin by giving each symmetry-equivalent 6gon its own color in the Goldberg triangles that we investigated, achiral ones with *T* ≤ 49 and chiral ones with *T* ≤ 37 (Fig. 4*A* and Fig. S2).

Planar equilateral 6gons can have seven different patterns of internal angles (Fig. 4*B*). Based on this taxonomy and symmetry, we label internal angles in 6gons of Goldberg triangles (Fig. 4*A* and Fig. S2) (*SI Text*, Secs. 3.1 and 3.2). Because of rotational symmetry and mirror planes, labeling of angles in Goldberg triangles (Fig. 4*A* and Fig. S2) is the same if the 6gons are merely equilateral (and nonplanar) or equilateral and planar. Angles in merely equilateral cages (Fig. S2 and Table S1) confirm the labeling (*SI Text*, Sec. 3.3). For each group of Goldberg triangles (*h*, 0; *h = k*; and *h* ≠ *k*), the number of unique internal 6gon angles increases with *T* (Table 1 and Table S2).

### Numbers of Variables and Equations.

The number of independent variables in a planar equilateral *n*-gon with all different internal angles is *n*−3 (Fig. 4 *B–D*) (*SI Text*, Sec. 3.4). (Three internal angles fully specify a planar equilateral 6gon with the *123456* pattern.) A planar equilateral *n*-gon constrained by symmetry has fewer, from 2 to 0 for a 6gon (Fig. 4*B*). For each Goldberg triangle (Fig. 4*A* and Fig. S2), we identify each 6gon’s type and number of independent variables (Table 1 and Table S2). For achiral cages with 4 ≤ *T* ≤ 49 and for chiral with 7 ≤ *T* ≤ 37, the number of independent variables ranges from 1 to 18.

By definition, any edge with differently labeled internal angles at its ends––marked by differently colored circles in Fig. 4*A* and Fig. S2**––**is a DAD edge. We mark one example of each type in each Goldberg triangle as a thick black edge (Fig. 4*A* and Fig. S2). Each unique type provides its own “zero-DAD” equation like Eq. **2**. Conversely, an edge with the same vertex types at its ends is generally not a DAD edge. However, two exceptions arise in chiral *h* ≠ *k* cages due to different arrangements of the same internal angles at the two ends of an edge (see Eq. **1**) (*SI Text*, Sec. 3.5).

In a cage with all planar faces, all DADs are zero. Therefore, for a given cage, we compare the number of different types of DAD edge––hence different zero-DAD equations––with the number of independent variables. To our astonishment, for all of the cages we examined, even chiral ones, these numbers are equal (Table 1 and Table S2). Spurred by this finding, we have proven that the numbers are equal for all Goldberg cages. The proof focuses on the asymmetric unit, approximately demarcated by the thick black edges in each Goldberg triangle (Fig. S2). It then follows a divide-and-conquer strategy, splitting the cages into six groups: *h* = *k* with odd *T* and even *T*, *h*, 0 with odd *T* and even *T*, and *h* ≠ *k* with odd *T* and even *T*.

Thus, for each equilateral cage there may exist a unique “polyhedral solution,” a set of internal angles that nulls all of the DADs, makes the faces planar, and makes the vertices convex.

### Solving the System of Equations for *T* = 4.

The Goldberg triangle for *T* = 4 (Fig. 4*A*) has one independent variable and one type of DAD edge. For the icosahedral cage, to compute the dihedral angle at the 5gon end of the DAD edge, we take advantage of the labeling of angles in Fig. 4*A* and replace *α* by 108° and *β* and *γ* in Eq. **1** by (360 − *b*)/2. To compute the dihedral angle at the 6gon end, we replace all of *α*, *β*, and *γ* in Eq. **1** by *b*. Then, we solve the zero-DAD Eq. **2** analytically, yielding or 116.565°, so *a* = 121.717°. The 6gons in this icosahedral Goldberg polyhedron are planar (Fig. 2*A*, *Bottom Middle*), confirmed by internal angles that sum to 720° (Σ in Fig. 2*A*, *Bottom Right* and Fig. S2).

Angle deficit is the difference between the sum of internal angles at a flat vertex (360°) and the sum at a vertex with curvature (1, 3). In the icosahedral *T* = 3 polyhedron (the truncated icosahedron, like C_{60}), the 12 pentagons account for all 720° of the angle deficit required by Descartes’ rule, and each of the sixty 566 (108°, 120°, 120°) vertices around the pentagons has 12° of angle deficit. By contrast, in the icosahedral *T* = 4 Goldberg polyhedron, the 720° are distributed among all vertices, 8.565° for each of the sixty 566 vertices (108°, 121.717°, 121.717°) and 10.305° for each of the twenty 666 vertices (116.565°, 116.565°, 116.565°) (Fig. 2*A*, *Bottom Right* and Fig. S2).

The octahedral and tetrahedral polyhedral solutions for *T* = 4 may be computed as above, except that internal angles in corner faces (*α* in Eq. **1**) are, respectively, 90° and 60° instead of 108°. For the octahedral *T* = 4 polyhedron, or 109.471°, so *a* = 125.264° (Fig. 2*A*, *Middle Right* and Fig. S2). For the tetrahedral *T* = 4 polyhedron, or 90°, so *a* = 135° (Fig. 2*A*, *Top Right* and Fig. S2). Thus, for *T* = 4, for each of these three types of polyhedral symmetry there is one Goldberg polyhedron.

### Mathematically Solving the Systems of Equations for *T* > 4 for Icosahedral Polyhedra.

For *T* > 4, we solve each system of *n* simultaneous zero-DAD equations like Eq. **2** with *n* variables for cages with *T* = 7, 9, 12, and 16 and *n* from 2 to 4 (Table 1 and Table S2; Fig. 4*A* and Fig. S2).

For example, the *T* = 9 cage has two zero-DAD equations and two variables (Fig. 4*A*). Given perimeter angle *a* (around the 5gon), we may obtain *b* (*=* 360° − 2*a)*. Given spoke-end angle *c*, we may obtain *d* (= 240° − *c*). We thus choose angles *a* and *c* as the two independent variables. The two zero-DAD equations are both in the form of Eq. **2**: DAD#1 is for the spoke edge from the orange vertex (108°*-a-a*) to the blue (*c-b-b*), and DAD#2 is for the “postspoke” edge from the blue vertex (*b-c-b*) to the red (*a-a-d*).

For each zero-DAD equation, the loci of solutions define a curve in the *a–c* plane (Fig. 5*A*). We calculate the DAD#1 curve analytically (Eq. S1; *SI Text*, Sec. 4.1) and the DAD#2 curve numerically (*SI Text*, Sec. 4.2). The curves intersect at the circled point (*a*, *c*) in Fig. 5*A*. The internal angles *a*, *b*, *c*, and *d* must also satisfy three inequalities: that internal angles add to <360° at each of the three vertex types––the orange (108°*-a-a*), blue (*c-b-b*), and red (*a*-*a-d*). These bounding inequalities (*a* < 126°, *c* > 2*a* − 120° and *c* < 4*a* − 360°) in the graph restrict (*a, c*) values for physically realizable, convex polyhedra to the shaded interior of the triangular region. We show the polyhedral solution, the values of internal angles in 6gons for *T* = 9, to different numbers of decimal places in Fig. 2*C* and Fig. S2 and under “polyhedra (Spartan)” and “polyhedra (solved)” in Table S1.

For *T* = 12 (Fig. 4*A*), and all achiral icosahedral cages for *T* > 4, the spoke edge (from the 108°*-a-a* vertex to the *c-b-b* vertex) and the labeling of 6gon #1 are the same as for *T* = 9, so the DAD#1 curves (Eq. **S1**) in Fig. 5 *A* and *B* are the same. Also, for achiral icosahedral polyhedra, the same bounding inequalities apply, giving the same shaded triangle. However, for *T* = 12, the zero-DAD equation for DAD#2 (from *b-c-b* to *a-a-d* in Fig. 4*A*) and its corresponding curve, obtained numerically, are different from those for *T* = 9, producing a different polyhedral solution (Fig. 5*B*).

For chiral icosahedral cages (e.g., with *T* = 7), we can reduce by one the number of both independent variables and DAD equations, from three to two for *T* = 7, by setting equal all of the internal angles around the perimeter of the corner faces (5gons), that is, by setting *b = a* (Fig. 4*A*) (*SI Text*, Sec. 4.3). Thus, for chiral cages the curve for the spoke DAD, originating in the orange vertex, now 108°-*a*-*a* instead of 108°-*a*-*b*, is also given by analytical Eq. **S1**. With two variables and equations, we use numerical methods (*SI Text*, Sec. 4.2) to obtain the icosahedral polyhedral solution for *T* = 7.

### Solving the System of Equations for Icosahedral Polyhedra with Chemistry Software.

Alternatively, we can compute the structure of Goldberg polyhedra with Spartan chemistry software (24). Given equal numbers of equations and variables (Table 1 and Table S2), the polyhedral solution should be unique for each Goldberg triangle. Therefore, chemistry software that enforces planarity as well as equilaterality (*SI Text*, Sec. 5) should give the same angles as the mathematical solutions above. Indeed, for all of the polyhedra for which we obtained solutions mathematically, that is, for *T* = 4, 7, 9, 12, and 16, the internal angles agree (Table S1).

Having confirmed the solutions computed by chemistry software, we use Spartan to produce the icosahedral polyhedra for achiral cages with *T* ≤ 49 and chiral cages with *T* ≤ 37 (Fig. S2;Table 1 and Table S1). To validate these unique polyhedral solutions, we confirm for each that all DADs are zero (Eq. **2**), internal angles in 6gons sum to 720°, internal angles at vertices sum to less than 360°, polyhedral symmetry still applies, and the cage is convex. Because of the possibility of “twist” (15), a DAD of zero about an edge does not by itself guarantee planarity of the two faces flanking that edge (Fig. S3). However, our mathematical solutions require a sum of 720° for each 6gon, enforcing planarity, and the chemistry software directly enforces planarity (*SI Text*, Sec. 5). Twist is thus precluded. Even for a cage as complex as *T* = 37, with 6 types of 6gon, 36 internal angles, 18 independent variables, and 18 zero-DAD equations (Table 1 and Table S2), this method works.

These data show that as *T* rises to infinity, perimeter angle (*a* for achiral icosahedral Goldberg polyhedra and *a* = *b* for chiral ones in Fig. 4*A* and Fig. S2) rises to approach 126° (Fig. 5*C*). Thus, angle deficit at each of the sixty 566 vertices (360°-2*a*-108°) would be <12°, leaving over angle deficit for 666 vertices. In addition, spoke-end angle (e.g., *c* for the achiral polyhedra in Fig. 4*A* and Fig. S2) rises to approach 144° (Fig. 5*D*). [Indeed, to nudge Spartan toward the global minimum, we can use estimates from these two graphs to temporarily constrain these angles (*SI Text*, Sec. 6).] As expected, as *T* increases, dihedral angles about the spoke edge and the postspoke edge rise to approach 180° (Fig. 5*E*).

For our merely equilateral cages, our settings in Spartan (*SI Text*, Sec. 2) encourage equiangularity, thus internal angles near 120° in 6gons (Figs. S1 and S2; Table S1). For carbon fullerenes, sp^{2} bonding also encourages bond angles near 120° in 6gons. Because regular 6gons tile a plane, the nearly equiangular (although nonplanar) 6gons in the interior of each triangular facet tend to flatten the facet. Thus, merely equilateral icosahedral cages exhibit a faceted or angular appearance (Fig. 2 *A–E*, *Left* and Figs. S1 and S2) like icosahedral carbon fullerenes (25) and some viruses (26), particularly when viewed along a two- or threefold axis **(**Fig. S4).

By contrast, the icosahedral Goldberg polyhedra are nearly spherical (Fig. 2 *A–D*, *Middle*, Fig. 2*E*, *Right* and Figs. S2 and S4; Table S3) like some other viruses (26). Indeed, some bacterial (27⇓⇓⇓⇓–32) and mammalian (33) double-stranded DNA viruses mature from a spherical to a faceted form that can withstand high pressure upon filling with DNA (34⇓–36). The faceted form may be stronger because equiangularity may promote quasi-equivalent binding among subunits (37).

### No Octahedral or Tetrahedral Goldberg Polyhedra for *T* > 4.

For the octahedral *T* = 9 polyhedron, Fig. 5*F* shows a unique solution, the circled point where the two DAD curves intersect, where perimeter angle *a* = 135° (thus *b* = 90°), and spoke-end angle *c* = 180° (thus *d* = 60°). This point lies on a corner of the shaded triangle, where internal angles sum to 360° at both (flat) orange and (flat) blue vertices (Fig. 4*A*). The chemistry software produces the corresponding *T* = 9 cage in Fig. 5*G*: With flat vertices and coplanar faces, the cage is not convex; with collinear edges, 6gons #2 are no longer 6gons. Thus, a convex equilateral octahedral Goldberg polyhedron does not exist for *T* = 9.

Fig. 5*F* tells the same story for *T* = 12, and indeed for all octahedral cages with *T* > 4. The curve labeled “DAD#1 (spoke)” is the same as that for *T* = 9 (Eq. **S1** with *σ* = 90°), and although the curve labeled “DAD#2 for *T* = 12” is different from that for *T* = 9, the circled point of intersection is the same. The corresponding *T* = 12 cage (Fig. 5*G*) has flat vertices, coplanar faces, and collinear edges. So does the *T* = 7 cage (Fig. 5*G*) for many of the same reasons. Thus, convex equilateral octahedral Goldberg polyhedra do not exist for *T* > 4.

A similar graph (Fig. 5*H*) demonstrates that no tetrahedral Goldberg polyhedra exist for *T* > 4. In this case, the curve (Eq. **S1** with *σ* = 60°) that represents the loci of solutions to the zero-DAD equation for the spoke edge (DAD#1) is the same for all *T* and resides entirely outside the shaded region; in addition, the DAD#2 curve does not intersect the DAD#1 curve.

## Discussion

The fourth class of convex equilateral polyhedra with polyhedral symmetry consists of a single tetrahedral polyhedron (*T* = 4), a single octahedral one (*T* = 4), and a countable infinity (38) of icosahedral ones (*T* ≥ 4), one for each pair *h*, *k* of positive integers. To obtain these polyhedra, with all planar faces, it was necessary to use the invention of DAD as a measure of nonplanarity (15, 16) and to recognize that nonplanar 6gons of a Goldberg cage might be made planar by bringing all of the DADs in the cage to zero.

An “equilateral polyhedral solution” for a given Goldberg cage would thus consist of the set of internal angles that brings its DADs to zero. To obtain such a solution for a given cage, we identified all of its types of DAD and corresponding zero-DAD equations. We also counted its independent variables, a subset of the internal angles that fully determines all of its internal angles. We discovered that the numbers of equations and independent variables were equal, raising the possibility of finding unique polyhedral solutions. Depending on the number of equations and variables, we were able to obtain unique polyhedral solutions analytically, numerically, or with chemistry software––and to reject any nonconvex structures.

The reasoning developed here, specifically counting equations and variables to determine if an equilateral polyhedral solution is possible, and the techniques, particularly use of chemistry software as a geometry engine, can be applied to other types of cage (39, 40). For example, we can draw an equilateral triangle over a 3636 tiling (Fig. S5*A*)––instead of a 666 tiling as in Figs. 1*A* and 4*A* and Fig. S2, and apply that triangle to the facets of an icosahedron to create an equilateral icosahedral cage (with 3gons, 6gons, and twelve 5gons at the corners). This cage can then be transformed into a convex equilateral icosahedral polyhedron (Fig. S5*B*). As another example, we can transform an equilateral tetrahedral fullerene cage (Fig. S5*C*) into a convex equilateral tetrahedral polyhedron (Fig. S5*D*). In these ways, it should be possible to obtain additional classes of highly symmetric convex polyhedra. These polyhedra could be useful in applications requiring structures that approximate spheres (41).

## Materials and Methods

We use Carbon Generator (CaGe) software (42) to produce protein data bank (pdb) files that can be read by Spartan chemistry software (*SI Text*, Secs. 1.1 and 1.2) to make cages with ≤250 vertices from custom atoms (*SI Text*, Sec. 2.1), equilateral with nearly equiangular 6gons (merely equilateral) (*SI Text*, Sec. 2.1), or with planar 6gons (*SI Text*, Sec. 5). We produce pdb files for larger cages by specifying triangular patches and then running the sym command in Chimera (*SI Text*, Sec. 1.2). We obtain polyhedral solutions analytically, numerically (*SI Text*, Secs. 4.1–4.3), or by use of Spartan (*SI Text*, Secs. 5 and 6).

## Acknowledgments

We thank Phil Klunzinger of Wavefunction, Inc. for help with modifications of the parameter file (params.MMFF94) of Spartan to produce molecules composed of a custom atom with custom properties. We thank Jihee Woo for insightful discussions at the inception of this project. We thank Benjamin Irvine for asking if DADs of zero were sufficient to guarantee planarity of faces and for help with the proof that numbers of DAD equations and independent variables are equal. We also thank Klunzinger, Irvine, Franklin Krasne, Mae Greenwald, and Andrew Schein for helpful comments on the paper. Molecular graphics were performed with the University of California, San Francisco (UCSF) Chimera package (21), developed by the Resource for Biocomputing, Visualization, and Informatics at the UCSF, with support from the National Institutes of Health (National Center for Research Resources Grant 2P41RR001081, National Institute of General Medical Sciences Grant 9P41gM103311).

## Footnotes

- ↵
^{1}To whom correspondence should be addressed. E-mail: stan.schein{at}gmail.com.

Author contributions: S.S. and J.M.G. designed research, performed research, contributed new analytic tools, analyzed data, and wrote the paper.

Conflict of interest statement: The University of California, Los Angeles may file a patent application for this work.

This article is a PNAS Direct Submission. P.F. is a guest editor invited by the Editorial Board.

This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1310939111/-/DCSupplemental.

## References

- ↵
- Coxeter HSM

- ↵
- Grünbaum B,
- Shephard GC

- ↵
- Cromwell PR

- ↵
- Richeson DS

- ↵
- ↵
- Kepler J

- ↵Kepler J (1619) Harmonices Mundi. Libri V; English translation of Book 2: JV Field, Kepler's Star Polyhedra, Vistas in Astronomy 23 (1979), 109–141.
- ↵
- Ford GC,
- et al.

- ↵
- ↵
- ↵
- Goldberg M

- ↵
- Caspar DL,
- Klug A

- ↵
- Butcher JC

- Coxeter HSM

- ↵
- Fowler PW,
- Manolopoulos DE

- ↵
- ↵
- ↵
- Schein S,
- Friedrich T

- ↵
- ↵
- ↵
- ↵
- ↵
- ↵
- ↵Hehre W, Ohlinger S (2006–2009)
*Spartan ’08 for Windows, MacIntosh and Linux: Tutorial and User’s Guide*. (Wavefunction, Inc., Irvine, CA). - ↵
- Dresselhaus MS,
- Dresselhaus G,
- Avouris P

- ↵
- Baker TS,
- Olson NH,
- Fuller SD

- ↵
- ↵
- Fokine A,
- et al.

- ↵
- ↵
- ↵
- ↵
- Chen DH,
- et al.

- ↵
- ↵
- ↵
- Evilevitch A,
- Lavelle L,
- Knobler CM,
- Raspaud E,
- Gelbart WM

- ↵
- Gelbart WM,
- Knobler CM

- ↵
- ↵
- Lang S

- ↵
- ↵
- ↵Vanhoenacker M (January 8, 2013) Digital globes offer a dynamic vision.
*NY Times*, Science Section, p D1. - ↵
- Brinkmann G,
- Friedrichs OD,
- Lisken S,
- Peeters A,
- Van Cleemput N

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