Skip to main content
  • Submit
  • About
    • Editorial Board
    • PNAS Staff
    • FAQ
    • Rights and Permissions
    • Site Map
  • Contact
  • Journal Club
  • Subscribe
    • Subscription Rates
    • Subscriptions FAQ
    • Open Access
    • Recommend PNAS to Your Librarian
  • Log in
  • My Cart

Main menu

  • Home
  • Articles
    • Current
    • Latest Articles
    • Special Features
    • Colloquia
    • Collected Articles
    • PNAS Classics
    • Archive
  • Front Matter
  • News
    • For the Press
    • Highlights from Latest Articles
    • PNAS in the News
  • Podcasts
  • Authors
    • Information for Authors
    • Purpose and Scope
    • Editorial and Journal Policies
    • Submission Procedures
    • For Reviewers
    • Author FAQ
  • Submit
  • About
    • Editorial Board
    • PNAS Staff
    • FAQ
    • Rights and Permissions
    • Site Map
  • Contact
  • Journal Club
  • Subscribe
    • Subscription Rates
    • Subscriptions FAQ
    • Open Access
    • Recommend PNAS to Your Librarian

User menu

  • Log in
  • My Cart

Search

  • Advanced search
Home
Home

Advanced Search

  • Home
  • Articles
    • Current
    • Latest Articles
    • Special Features
    • Colloquia
    • Collected Articles
    • PNAS Classics
    • Archive
  • Front Matter
  • News
    • For the Press
    • Highlights from Latest Articles
    • PNAS in the News
  • Podcasts
  • Authors
    • Information for Authors
    • Purpose and Scope
    • Editorial and Journal Policies
    • Submission Procedures
    • For Reviewers
    • Author FAQ

New Research In

Physical Sciences

Featured Portals

  • Physics
  • Chemistry
  • Sustainability Science

Articles by Topic

  • Applied Mathematics
  • Applied Physical Sciences
  • Astronomy
  • Computer Sciences
  • Earth, Atmospheric, and Planetary Sciences
  • Engineering
  • Environmental Sciences
  • Mathematics
  • Statistics

Social Sciences

Featured Portals

  • Anthropology
  • Sustainability Science

Articles by Topic

  • Economic Sciences
  • Environmental Sciences
  • Political Sciences
  • Psychological and Cognitive Sciences
  • Social Sciences

Biological Sciences

Featured Portals

  • Sustainability Science

Articles by Topic

  • Agricultural Sciences
  • Anthropology
  • Applied Biological Sciences
  • Biochemistry
  • Biophysics and Computational Biology
  • Cell Biology
  • Developmental Biology
  • Ecology
  • Environmental Sciences
  • Evolution
  • Genetics
  • Immunology and Inflammation
  • Medical Sciences
  • Microbiology
  • Neuroscience
  • Pharmacology
  • Physiology
  • Plant Biology
  • Population Biology
  • Psychological and Cognitive Sciences
  • Sustainability Science
  • Systems Biology

Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean

Hannes Schroeder, María C. Ávila-Arcos, Anna-Sapfo Malaspinas, G. David Poznik, Marcela Sandoval-Velasco, Meredith L. Carpenter, José Víctor Moreno-Mayar, Martin Sikora, Philip L. F. Johnson, Morten Erik Allentoft, José Alfredo Samaniego, Jay B. Haviser, Michael W. Dee, Thomas W. Stafford Jr., Antonio Salas, Ludovic Orlando, Eske Willerslev, Carlos D. Bustamante, and M. Thomas P. Gilbert
PNAS published ahead of print March 9, 2015 https://doi.org/10.1073/pnas.1421784112
Hannes Schroeder
aCentre for Geogenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark;bFaculty of Archaeology, Leiden University, 2300 Leiden, The Netherlands;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: hschroeder@snm.ku.dktgilbert@snm.ku.dk
María C. Ávila-Arcos
aCentre for Geogenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark;cDepartment of Genetics, Stanford University, Stanford, CA 94305;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Anna-Sapfo Malaspinas
aCentre for Geogenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
G. David Poznik
dProgram in Biomedical Informatics and Department of Statistics, Stanford University, Stanford, CA 94305;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for G. David Poznik
Marcela Sandoval-Velasco
aCentre for Geogenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Meredith L. Carpenter
cDepartment of Genetics, Stanford University, Stanford, CA 94305;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
José Víctor Moreno-Mayar
aCentre for Geogenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Martin Sikora
aCentre for Geogenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark;cDepartment of Genetics, Stanford University, Stanford, CA 94305;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Philip L. F. Johnson
eDepartment of Biology, Emory University, Atlanta, GA 30322;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Morten Erik Allentoft
aCentre for Geogenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
José Alfredo Samaniego
aCentre for Geogenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jay B. Haviser
fSt. Maarten Archaeological Center, Philipsburg, Saint Martin;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Michael W. Dee
gResearch Laboratory for Archaeology and the History of Art, University of Oxford, OX1 3QY Oxford, United Kingdom;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Thomas W. Stafford
hAMS 14C Dating Centre, Department of Physics and Astronomy, Aarhus University, 8000 Aarhus, Denmark; and
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Antonio Salas
iUnidade de Xenética, Departamento de Anatomía Patolóxica e Ciencias Forenses, and Instituto de Ciencias Forenses, Facultade de Medicina, Universidade de Santiago de Compostela, 15872 Galicia, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Ludovic Orlando
aCentre for Geogenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Eske Willerslev
aCentre for Geogenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Carlos D. Bustamante
cDepartment of Genetics, Stanford University, Stanford, CA 94305;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
M. Thomas P. Gilbert
aCentre for Geogenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark;
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: hschroeder@snm.ku.dktgilbert@snm.ku.dk
  1. Edited by Rick A. Kittles, University of Arizona, Tucson, AZ, and accepted by the Editorial Board February 2, 2015 (received for review November 17, 2014)

  • Article
  • Figures & SI
  • Info & Metrics
  • PDF
Loading

Significance

The transatlantic slave trade resulted in the forced movement of over 12 million Africans to the Americas. Although many coastal shipping points are known, they do not necessarily reflect the slaves’ actual ethnic or geographic origins. We obtained genome-wide data from 17th-century remains of three enslaved individuals who died on the Caribbean island of Saint Martin and use them to identify their genetic origins in Africa, with far greater precision than previously thought possible. The study demonstrates that genomic data can be used to trace the genetic ancestry of long-dead individuals, a finding that has important implications for archeology, especially in cases where historical information is missing.

Abstract

Between 1500 and 1850, more than 12 million enslaved Africans were transported to the New World. The vast majority were shipped from West and West-Central Africa, but their precise origins are largely unknown. We used genome-wide ancient DNA analyses to investigate the genetic origins of three enslaved Africans whose remains were recovered on the Caribbean island of Saint Martin. We trace their origins to distinct subcontinental source populations within Africa, including Bantu-speaking groups from northern Cameroon and non-Bantu speakers living in present-day Nigeria and Ghana. To our knowledge, these findings provide the first direct evidence for the ethnic origins of enslaved Africans, at a time for which historical records are scarce, and demonstrate that genomic data provide another type of record that can shed new light on long-standing historical questions.

  • ancient DNA
  • genomics
  • slave trade

Footnotes

  • ↵1H.S. and M.C.A.A. contributed equally to this work.

  • ↵2To whom correspondence may be addressed. Email: hschroeder{at}snm.ku.dk or tgilbert{at}snm.ku.dk.
  • ↵3Present address: IdentifyGenomics, LLC, Menlo Park, CA 94305.

  • Author contributions: H.S., M.C.A.A., and M.T.P.G. designed research; H.S., M.S.V., M.L.C., J.B.H., M.W.D., and T.W.S. performed research; H.S., M.C.A.A., A.S.M., G.D.P., J.V.M.M., M.S., P.L.F.J., M.E.A., J.A.S., M.W.D., A.S., and L.O. analyzed data; H.S., M.C.A.A., and M.T.P.G. wrote the paper; J.B.H. provided samples; and H.S., E.W., C.D.B., and M.T.P.G. supervised research.

  • Conflict of interest statement: C.D.B. is the founder of IdentifyGenomics, LLC, and is on the Scientific Advisory Boards of Personalis, Inc., and Ancestry.com as well as the Medical Advisory Board of InVitae. M.L.C. is now the Chief Scientific Officer at IdentifyGenomics, LLC. None of this played a role in the design, execution, or interpretation of experiments and results presented here.

  • This article is a PNAS Direct Submission. R.A.K. is a guest editor invited by the Editorial Board.

  • Data deposition: The data reported in this paper have been deposited in the European Nucleotide Archive, www.ebi.ac.uk/ena (project accession no. PRJEB8269). The mapped data are available upon request.

  • This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1421784112/-/DCSupplemental.

Freely available online through the PNAS open access option.

Next
Back to top
Article Alerts
Email Article

Thank you for your interest in spreading the word on PNAS.

NOTE: We only request your email address so that the person you are recommending the page to knows that you wanted them to see it, and that it is not junk mail. We do not capture any email address.

Enter multiple addresses on separate lines or separate them with commas.
Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean
(Your Name) has sent you a message from PNAS
(Your Name) thought you would like to see the PNAS web site.
Citation Tools
Genome-wide ancestry of enslaved Africans
Hannes Schroeder, María C. Ávila-Arcos, Anna-Sapfo Malaspinas, G. David Poznik, Marcela Sandoval-Velasco, Meredith L. Carpenter, José Víctor Moreno-Mayar, Martin Sikora, Philip L. F. Johnson, Morten Erik Allentoft, José Alfredo Samaniego, Jay B. Haviser, Michael W. Dee, Thomas W. Stafford, Antonio Salas, Ludovic Orlando, Eske Willerslev, Carlos D. Bustamante, M. Thomas P. Gilbert
Proceedings of the National Academy of Sciences Mar 2015, 201421784; DOI: 10.1073/pnas.1421784112

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
Request Permissions
Share
Genome-wide ancestry of enslaved Africans
Hannes Schroeder, María C. Ávila-Arcos, Anna-Sapfo Malaspinas, G. David Poznik, Marcela Sandoval-Velasco, Meredith L. Carpenter, José Víctor Moreno-Mayar, Martin Sikora, Philip L. F. Johnson, Morten Erik Allentoft, José Alfredo Samaniego, Jay B. Haviser, Michael W. Dee, Thomas W. Stafford, Antonio Salas, Ludovic Orlando, Eske Willerslev, Carlos D. Bustamante, M. Thomas P. Gilbert
Proceedings of the National Academy of Sciences Mar 2015, 201421784; DOI: 10.1073/pnas.1421784112
del.icio.us logo Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
  • Tweet Widget
  • Facebook Like
  • Mendeley logo Mendeley

More Articles of This Classification

Biological Sciences

  • Highly disordered histone H1−DNA model complexes and their condensates
  • Thermodynamic favorability and pathway yield as evolutionary tradeoffs in biosynthetic pathway choice
  • SUMO protease SENP1 deSUMOylates and stabilizes c-Myc
Show more

Anthropology

  • Salt and marine products in the Classic Maya economy from use-wear study of stone tools
  • Synchronization of energy consumption by human societies throughout the Holocene
  • Impact of climate change on the transition of Neanderthals to modern humans in Europe
Show more

Social Sciences

  • Salt and marine products in the Classic Maya economy from use-wear study of stone tools
  • Synchronization of energy consumption by human societies throughout the Holocene
  • Impact of climate change on the transition of Neanderthals to modern humans in Europe
Show more

Related Content

  • In This Issue
  • Scopus
  • PubMed
  • Google Scholar

Cited by...

  • Ancient DNA reveals the chronology of walrus ivory trade from Norse Greenland
  • Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe
  • Origins and genetic legacies of the Caribbean Taino
  • Ancient DNA reveals the Arctic origin of Viking Age cod from Haithabu, Germany
  • Human evolution: a tale from ancient genomes
  • The Effects of Migration and Assortative Mating on Admixture Linkage Disequilibrium
  • The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences
  • Scopus (41)
  • Google Scholar

Similar Articles

You May Also be Interested in

Better understanding how the truffles reproduce has major implications for farmers, chefs, and foodies enamored with the expensive, pungent fungus. Image courtesy of Shutterstock/Vitalina Rybakova.
Inner Workings: The mysterious parentage of the coveted black truffle
Better understanding how the truffles reproduce has major implications for farmers, chefs, and foodies enamored with the expensive, pungent fungus.
Image courtesy of Shutterstock/Vitalina Rybakova.
PNAS QnAs with NAS foreign associate and metabolic engineer Sang Yup Lee
PNAS QnAs
PNAS QnAs with NAS foreign associate and metabolic engineer Sang Yup Lee
Researchers report a species of early bird with a combination of bird-like and dinosaur-like bone morphologies, and the structure of the bird’s shoulder girdle highlights the role of developmental plasticity in the early evolution of birds, according to the authors.
Dinosaur-like forms in early bird shoulders
Researchers report a species of early bird with a combination of bird-like and dinosaur-like bone morphologies, and the structure of the bird’s shoulder girdle highlights the role of developmental plasticity in the early evolution of birds, according to the authors.
Honey bee. Image courtesy of Vivian Abagiu (The University of Texas at Austin, Austin, TX).
Effect of glyphosate on honey bee gut
A study suggests that the herbicide glyphosate disrupts bee gut microbiota, increasing bees’ susceptibility to pathogens, and that glyphosate’s effects may contribute to the largely unexplained increase in honey bee colony mortality.
Image courtesy of Vivian Abagiu (The University of Texas at Austin, Austin, TX).
HIV. Image courtesty of Pixabay/typographyimages.
Ancient retrovirus and intravenous drug use
A study finds that a fragment of an ancient retrovirus, integrated in human ancestors before the emergence of Neanderthals, is found more frequently in people who contracted HIV and hepatitis C through intravenous drug use, compared with control populations.
Image courtesty of Pixabay/typographyimages.
Proceedings of the National Academy of Sciences: 115 (41)
Current Issue

Submit

Sign up for Article Alerts

Jump to section

  • Article
  • Figures & SI
  • Info & Metrics
  • PDF
Site Logo
Powered by HighWire
  • Submit Manuscript
  • Twitter
  • Facebook
  • RSS Feeds
  • Email Alerts

Articles

  • Current Issue
  • Latest Articles
  • Archive

PNAS Portals

  • Classics
  • Front Matter
  • Teaching Resources
  • Anthropology
  • Chemistry
  • Physics
  • Sustainability Science

Information

  • Authors
  • Reviewers
  • Press
  • Site Map

Feedback    Privacy/Legal

Copyright © 2018 National Academy of Sciences.