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Table of Contents

October 14, 2003; 100 (21)  [Index By Author]  [Cover Photo]

FROM THE COVER

Transcription factor Sp8 in limb development

Tracing a catalytic path from reactants to transition state

Microarrays uncover cooperating transcription regulators (A)

Microarrays uncover cooperating transcription regulators (B)

Kinase mutations and impaired digit development

Phosphorylation enhances capsaicin receptor activation

COMMENTARIES

PHYSICAL SCIENCES
    Applied Mathematics
    Applied Physical Sciences
    Chemistry
    Geophysics
    Physics

SOCIAL SCIENCES
    Anthropology
    Economic Sciences

BIOLOGICAL SCIENCES
    Agricultural Sciences
    Applied Biological Sciences
    Biochemistry
    Biophysics
    Cell Biology
    Developmental Biology
    Ecology
    Evolution
    Genetics

    Immunology
    Medical Sciences
    Microbiology
    Neuroscience
    Pharmacology
    Physiology
    Plant Biology

CORRECTIONS

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COMMENTARIES

Stephen R. Palumbi
Ecological subsidies alter the structure of marine communities
PNAS 2003 100: 11927-11928; published online before print October 6 2003, 10.1073/pnas.2335832100 [Extract] [Full Text] [PDF]  
See companion article on page 12229

Alan Rein
Genetic footprinting of a retroviral Gag gene suggests an important role in virus replication
PNAS 2003 100: 11929-11930; published online before print October 6 2003, 10.1073/pnas.2135539100 [Extract] [Full Text] [PDF]  

Richard L. Schowen
How an enzyme surmounts the activation energy barrier
PNAS 2003 100: 11931-11932; published online before print October 6 2003, 10.1073/pnas.2235806100 [Extract] [Full Text] [PDF]  
See companion article on page 12015

Michael S. Worden and John J. Foxe
The dynamics of the spread of selective visual attention
PNAS 2003 100: 11933-11935; published online before print October 6 2003, 10.1073/pnas.2135485100 [Extract] [Full Text] [PDF]  

PHYSICAL SCIENCES

Applied Mathematics

Richard Blankenbecler, Mattias Ohlsson, Carsten Peterson, and Markus Ringnér
Matching protein structures with fuzzy alignments
PNAS 2003 100: 11936-11940; published online before print October 2 2003, 10.1073/pnas.1635048100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Boualem Khouider, Andrew J. Majda, and Markos A. Katsoulakis
Coarse-grained stochastic models for tropical convection and climate
PNAS 2003 100: 11941-11946; published online before print September 30 2003, 10.1073/pnas.1634951100 [Abstract] [Full Text] [PDF]  

Applied Physical Sciences

Caesar Saloma, Gay Jane Perez, Giovanni Tapang, May Lim, and Cynthia Palmes-Saloma
Self-organized queuing and scale-free behavior in real escape panic
PNAS 2003 100: 11947-11952; published online before print September 30 2003, 10.1073/pnas.2031912100 [Abstract] [Full Text] [PDF]  

Chemistry

X. Huang, C. J. Margulis, and B. J. Berne
Dewetting-induced collapse of hydrophobic particles
PNAS 2003 100: 11953-11958; published online before print September 24 2003, 10.1073/pnas.1934837100 [Abstract] [Full Text] [PDF]  

Wen Liu, Joachim Ahlert, Qunjie Gao, Evelyn Wendt-Pienkowski, Ben Shen, and Jon S. Thorson
Rapid PCR amplification of minimal enediyne polyketide synthase cassettes leads to a predictive familial classification model
PNAS 2003 100: 11959-11963; published online before print October 3 2003, 10.1073/pnas.2034291100 [Abstract] [Full Text] [PDF]  

Nathalie Sordé, Gopal Das, and Stefan Matile
Enzyme screening with synthetic multifunctional pores: Focus on biopolymers
PNAS 2003 100: 11964-11969; published online before print October 6 2003, 10.1073/pnas.2132894100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Jonathan R. Nitschke and Jean-Marie Lehn
Self-organization by selection: Generation of a metallosupramolecular grid architecture by selection of components in a dynamic library of ligands
PNAS 2003 100: 11970-11974; published online before print September 29 2003, 10.1073/pnas.1534925100 [Abstract] [Full Text] [PDF]  

David P. Barondeau, Christopher D. Putnam, Carey J. Kassmann, John A. Tainer, and Elizabeth D. Getzoff
Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures
PNAS 2003 100: 12111-12116; published online before print October 1 2003, 10.1073/pnas.2133463100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Geophysics

Aaron S. Katzenstein, Lambert A. Doezema, Isobel J. Simpson, Donald R. Blake, and F. Sherwood Rowland
Extensive regional atmospheric hydrocarbon pollution in the southwestern United States
PNAS 2003 100: 11975-11979; published online before print October 6 2003, 10.1073/pnas.1635258100 [Abstract] [Full Text] [PDF]  

Physics

S. Mangan and U. Alon
Structure and function of the feed-forward loop network motif
PNAS 2003 100: 11980-11985; published online before print October 6 2003, 10.1073/pnas.2133841100 [Abstract] [Full Text] [PDF] [Supporting Tables]  

SOCIAL SCIENCES

Anthropology

J. M. Bermúdez de Castro, M. Martinón-Torres, S. Sarmiento, M. Lozano, J. L. Arsuaga, and E. Carbonell
Rates of anterior tooth wear in Middle Pleistocene hominins from Sima de los Huesos (Sierra de Atapuerca, Spain)
PNAS 2003 100: 11992-11996; published online before print October 3 2003, 10.1073/pnas.2034879100 [Abstract] [Full Text] [PDF]  

Economic Sciences

Peter Sheridan Dodds, Duncan J. Watts, and Charles F. Sabel
Information exchange and the robustness of organizational networks
PNAS 2003 100: 12516-12521; published online before print October 3 2003, 10.1073/pnas.1534702100 [Abstract] [Full Text] [PDF]  

BIOLOGICAL SCIENCES

Agricultural Sciences

Tetsuro Shinoda and Kyo Itoyama
Juvenile hormone acid methyltransferase: A key regulatory enzyme for insect metamorphosis
PNAS 2003 100: 11986-11991; published online before print October 6 2003, 10.1073/pnas.2134232100 [Abstract] [Full Text] [PDF] [Supporting Figure]  

Applied Biological Sciences

Siyuan Tan, Dmitry Guschin, Albert Davalos, Ya-Li Lee, Andrew W. Snowden, Yann Jouvenot, H. Steven Zhang, Katherine Howes, Andrew R. McNamara, Albert Lai, Chris Ullman, Lindsey Reynolds, Michael Moore, Mark Isalan, Lutz-Peter Berg, Bradley Campos, Hong Qi, S. Kaye Spratt, Casey C. Case, Carl O. Pabo, Judith Campisi, and Philip D. Gregory
Zinc-finger protein-targeted gene regulation: Genomewide single-gene specificity
PNAS 2003 100: 11997-12002; published online before print September 26 2003, 10.1073/pnas.2035056100 [Abstract] [Full Text] [PDF]  

Biochemistry

Greg T. Cantin, Jennitte L. Stevens, and Arnold J. Berk
Activation domain–mediator interactions promote transcription preinitiation complex assembly on promoter DNA
PNAS 2003 100: 12003-12008; published online before print September 23 2003, 10.1073/pnas.2035253100 [Abstract] [Full Text] [PDF]  

Laëtitia K. Linares, Arnd Hengstermann, Aaron Ciechanover, Stefan Müller, and Martin Scheffner
HdmX stimulates Hdm2-mediated ubiquitination and degradation of p53
PNAS 2003 100: 12009-12014; published online before print September 24 2003, 10.1073/pnas.2030930100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Sun Hur and Thomas C. Bruice
From the Cover: The near attack conformation approach to the study of the chorismate to prephenate reaction
PNAS 2003 100: 12015-12020; published online before print October 1 2003, 10.1073/pnas.1534873100 [Abstract] [Full Text] [PDF] [Supporting Infomation]  
See Commentary on page 11931

Valeria Menchise, Giuseppina De Simone, Tullia Tedeschi, Roberto Corradini, Stefano Sforza, Rosangela Marchelli, Domenica Capasso, Michele Saviano, and Carlo Pedone
Insights into peptide nucleic acid (PNA) structural features: The crystal structure of a D-lysine-based chiral PNA–DNA duplex
PNAS 2003 100: 12021-12026; published online before print September 25 2003, 10.1073/pnas.2034746100 [Abstract] [Full Text] [PDF]  

Jay D. Horton, Nila A. Shah, Janet A. Warrington, Norma N. Anderson, Sahng Wook Park, Michael S. Brown, and Joseph L. Goldstein
Combined analysis of oligonucleotide microarray data from transgenic and knockout mice identifies direct SREBP target genes
PNAS 2003 100: 12027-12032; published online before print September 25 2003, 10.1073/pnas.1534923100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Shu He, David Bauman, Jamaine S. Davis, Alejandra Loyola, Kenichi Nishioka, Jennifer L. Gronlund, Danny Reinberg, Fanyu Meng, Neil Kelleher, and Dewey G. McCafferty
Facile synthesis of site-specifically acetylated and methylated histone proteins: Reagents for evaluation of the histone code hypothesis
PNAS 2003 100: 12033-12038; published online before print October 6 2003, 10.1073/pnas.2035256100 [Abstract] [Full Text] [PDF] [Supporting Text]  

Ermanno Gherardi, Mark E. Youles, Ricardo N. Miguel, Tom L. Blundell, Luisa Iamele, Julian Gough, Abhishek Bandyopadhyay, Guido Hartmann, and P. Jonathan G. Butler
Functional map and domain structure of MET, the product of the c-met protooncogene and receptor for hepatocyte growth factor/scatter factor
PNAS 2003 100: 12039-12044; published online before print October 3 2003, 10.1073/pnas.2034936100 [Abstract] [Full Text] [PDF] [Supporting Table]  

Pam Tangvoranuntakul, Pascal Gagneux, Sandra Diaz, Muriel Bardor, Nissi Varki, Ajit Varki, and Elaine Muchmore
Human uptake and incorporation of an immunogenic nonhuman dietary sialic acid
PNAS 2003 100: 12045-12050; published online before print October 1 2003, 10.1073/pnas.2131556100 [Abstract] [Full Text] [PDF] [Supporting Information] [Online Correction to Supporting Table 2]  

Alireza R. Rezaie and Likui Yang
Thrombomodulin allosterically modulates the activity of the anticoagulant thrombin
PNAS 2003 100: 12051-12056; published online before print October 1 2003, 10.1073/pnas.2135346100 [Abstract] [Full Text] [PDF]  

Frank J. Grundy, Susan C. Lehman, and Tina M. Henkin
The L box regulon: Lysine sensing by leader RNAs of bacterial lysine biosynthesis genes
PNAS 2003 100: 12057-12062; published online before print October 1 2003, 10.1073/pnas.2133705100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Timothy P. Best, Benjamin S. Edelson, Nicholas G. Nickols, and Peter B. Dervan
Nuclear localization of pyrrole–imidazole polyamide–fluorescein conjugates in cell culture
PNAS 2003 100: 12063-12068; published online before print September 30 2003, 10.1073/pnas.2035074100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Bishwajit Kundu, Nilesh R. Maiti, Eric M. Jones, Krystyna A. Surewicz, David L. Vanik, and Witold K. Surewicz
Nucleation-dependent conformational conversion of the Y145Stop variant of human prion protein: Structural clues for prion propagation
PNAS 2003 100: 12069-12074; published online before print September 30 2003, 10.1073/pnas.2033281100 [Abstract] [Full Text] [PDF]  

Nicole Poulsen, Manfred Sumper, and Nils Kröger
Biosilica formation in diatoms: Characterization of native silaffin-2 and its role in silica morphogenesis
PNAS 2003 100: 12075-12080; published online before print September 24 2003, 10.1073/pnas.2035131100 [Abstract] [Full Text] [PDF]  

Erwin van Dijk, Hervé Le Hir, and Bertrand Séraphin
DcpS can act in the 5'–3' mRNA decay pathway in addition to the 3'–5' pathway
PNAS 2003 100: 12081-12086; published online before print October 1 2003, 10.1073/pnas.1635192100 [Abstract] [Full Text] [PDF]  

Angela Fago, Alvin L. Crumbliss, Jim Peterson, Linda L. Pearce, and Celia Bonaventura
The case of the missing NO– hemoglobin: Spectral changes suggestive of heme redox reactions reflect changes in NO– heme geometry
PNAS 2003 100: 12087-12092; published online before print September 26 2003, 10.1073/pnas.2032603100 [Abstract] [Full Text] [PDF]  

M. Todd Washington, Louise Prakash, and Satya Prakash
Mechanism of nucleotide incorporation opposite a thymine-thymine dimer by yeast DNA polymerase {eta}
PNAS 2003 100: 12093-12098; published online before print October 3 2003, 10.1073/pnas.2134223100 [Abstract] [Full Text] [PDF]  

Biophysics

Robert K. Adair
Noise and stochastic resonance in voltage-gated ion channels
PNAS 2003 100: 12099-12104; published online before print September 23 2003, 10.1073/pnas.2034447100 [Abstract] [Full Text] [PDF]  

Jens Meiler and David Baker
Coupled prediction of protein secondary and tertiary structure
PNAS 2003 100: 12105-12110; published online before print October 3 2003, 10.1073/pnas.1831973100 [Abstract] [Full Text] [PDF]  

David P. Barondeau, Christopher D. Putnam, Carey J. Kassmann, John A. Tainer, and Elizabeth D. Getzoff
Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures
PNAS 2003 100: 12111-12116; published online before print October 1 2003, 10.1073/pnas.2133463100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Mourad Sadqi, Lisa J. Lapidus, and Victor Muñoz
How fast is protein hydrophobic collapse?
PNAS 2003 100: 12117-12122; published online before print October 6 2003, 10.1073/pnas.2033863100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Victor Spirin and Leonid A. Mirny
Protein complexes and functional modules in molecular networks
PNAS 2003 100: 12123-12128; published online before print September 29 2003, 10.1073/pnas.2032324100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Peter G. Bolhuis
Transition-path sampling of {beta}-hairpin folding
PNAS 2003 100: 12129-12134; published online before print October 1 2003, 10.1073/pnas.1534924100 [Abstract] [Full Text] [PDF]  

Bertil Halle and Monika Davidovic
Biomolecular hydration: From water dynamics to hydrodynamics
PNAS 2003 100: 12135-12140; published online before print October 3 2003, 10.1073/pnas.2033320100 [Abstract] [Full Text] [PDF] [Supporting Table]  

Adam E. Cohen and L. Mahadevan
Kinks, rings, and rackets in filamentous structures
PNAS 2003 100: 12141-12146; published online before print October 6 2003, 10.1073/pnas.1534600100 [Abstract] [Full Text] [PDF]  

Cell Biology

Vadim Iourgenko, Wenjun Zhang, Craig Mickanin, Ira Daly, Can Jiang, Jonathan M. Hexham, Anthony P. Orth, Loren Miraglia, Jodi Meltzer, Dan Garza, Gung-Wei Chirn, Elizabeth McWhinnie, Dalia Cohen, Joanne Skelton, Robert Terry, Yang Yu, Dale Bodian, Frank P. Buxton, Jian Zhu, Chuanzheng Song, and Mark A. Labow
From the Cover: Identification of a family of cAMP response element-binding protein coactivators by genome-scale functional analysis in mammalian cells
PNAS 2003 100: 12147-12152; published online before print September 23 2003, 10.1073/pnas.1932773100 [Abstract] [Full Text] [PDF]  

Sumit K. Chanda, Suhaila White, Anthony P. Orth, Richard Reisdorph, Loren Miraglia, Russell S. Thomas, Paul DeJesus, Daniel E. Mason, Qihong Huang, Raquel Vega, De-Hua Yu, Christian G. Nelson, Brendan M. Smith, Robert Terry, Alicia S. Linford, Yang Yu, Gung-wei Chirn, Chuanzheng Song, Mark A. Labow, Dalia Cohen, Frederick J. King, Eric C. Peters, Peter G. Schultz, Peter K. Vogt, John B. Hogenesch, and Jeremy S. Caldwell
From the Cover: Genome-scale functional profiling of the mammalian AP-1 signaling pathway
PNAS 2003 100: 12153-12158; published online before print September 26 2003, 10.1073/pnas.1934839100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Giovanna Pontarin, Lisa Gallinaro, Paola Ferraro, Peter Reichard, and Vera Bianchi
Origins of mitochondrial thymidine triphosphate: Dynamic relations to cytosolic pools
PNAS 2003 100: 12159-12164; published online before print September 30 2003, 10.1073/pnas.1635259100 [Abstract] [Full Text] [PDF]  

Ming Luo, Sandra M. Jones, Marc Peters-Golden, and Thomas G. Brock
Nuclear localization of 5-lipoxygenase as a determinant of leukotriene B4 synthetic capacity
PNAS 2003 100: 12165-12170; published online before print October 6 2003, 10.1073/pnas.2133253100 [Abstract] [Full Text] [PDF]  

Eugenia Trushina, Michael P. Heldebrant, Carmen M. Perez-Terzic, Ryan Bortolon, Irina V. Kovtun, John D. Badger, II, Andre Terzic, Alvaro Estévez, Anthony J. Windebank, Roy B. Dyer, Janet Yao, and Cynthia T. McMurray
Microtubule destabilization and nuclear entry are sequential steps leading to toxicity in Huntington's disease
PNAS 2003 100: 12171-12176; published online before print October 3 2003, 10.1073/pnas.2034961100 [Abstract] [Full Text] [PDF] [Supporting Text]  

Philipp Berger, Christiane Schaffitzel, Imre Berger, Nenad Ban, and Ueli Suter
Membrane association of myotubularin-related protein 2 is mediated by a pleckstrin homology-GRAM domain and a coiled-coil dimerization module
PNAS 2003 100: 12177-12182; published online before print October 6 2003, 10.1073/pnas.2132732100 [Abstract] [Full Text] [PDF] [Supporting Figure]  

Maarten Hoek and Bruce Stillman
Chromatin assembly factor 1 is essential and couples chromatin assembly to DNA replication in vivo
PNAS 2003 100: 12183-12188; published online before print September 30 2003, 10.1073/pnas.1635158100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Developmental Biology

Martina Zikova, Jean-Philippe Da Ponte, Bernard Dastugue, and Krzysztof Jagla
Patterning of the cardiac outflow region in Drosophila
PNAS 2003 100: 12189-12194; published online before print September 30 2003, 10.1073/pnas.2133156100 [Abstract] [Full Text] [PDF]  

Sheila M. Bell, Claire M. Schreiner, Ronald R. Waclaw, Kenneth Campbell, S. Steven Potter, and William J. Scott
From the Cover: Sp8 is crucial for limb outgrowth and neuropore closure
PNAS 2003 100: 12195-12200; published online before print October 2 2003, 10.1073/pnas.2134310100 [Abstract] [Full Text] [PDF]  

Nikolaus Schultz, F. Kent Hamra, and David L. Garbers
A multitude of genes expressed solely in meiotic or postmeiotic spermatogenic cells offers a myriad of contraceptive targets
PNAS 2003 100: 12201-12206; published online before print October 2 2003, 10.1073/pnas.1635054100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Yukiko Yamazaki, Mellissa R. W. Mann, Susan S. Lee, Joel Marh, John R. McCarrey, Ryuzo Yanagimachi, and Marisa S. Bartolomei
Reprogramming of primordial germ cells begins before migration into the genital ridge, making these cells inadequate donors for reproductive cloning
PNAS 2003 100: 12207-12212; published online before print September 23 2003, 10.1073/pnas.2035119100 [Abstract] [Full Text] [PDF]  

Fu-Chun Hsu, Guo-Jun Zhang, Yogendra Sinh H. Raol, Rita J. Valentino, Douglas A. Coulter, and Amy R. Brooks-Kayal
Repeated neonatal handling with maternal separation permanently alters hippocampal GABAA receptors and behavioral stress responses
PNAS 2003 100: 12213-12218; published online before print October 6 2003, 10.1073/pnas.2131679100 [Abstract] [Full Text] [PDF]  

Ecology

Peter A. Cotton
Avian migration phenology and global climate change
PNAS 2003 100: 12219-12222; published online before print September 30 2003, 10.1073/pnas.1930548100 [Abstract] [Full Text] [PDF]  

A. M. Springer, J. A. Estes, G. B. van Vliet, T. M. Williams, D. F. Doak, E. M. Danner, K. A. Forney, and B. Pfister
Sequential megafaunal collapse in the North Pacific Ocean: An ongoing legacy of industrial whaling?
PNAS 2003 100: 12223-12228; published online before print October 2 2003, 10.1073/pnas.1635156100 [Abstract] [Full Text] [PDF]  

B. A. Menge, J. Lubchenco, M. E. S. Bracken, F. Chan, M. M. Foley, T. L. Freidenburg, S. D. Gaines, G. Hudson, C. Krenz, H. Leslie, D. N. L. Menge, R. Russell, and M. S. Webster
Coastal oceanography sets the pace of rocky intertidal community dynamics
PNAS 2003 100: 12229-12234; published online before print September 25 2003, 10.1073/pnas.1534875100 [Abstract] [Full Text] [PDF]  
See Commentary on page 11927

Evolution

Yoshihito Niimura and Masatoshi Nei
Evolution of olfactory receptor genes in the human genome
PNAS 2003 100: 12235-12240; published online before print September 24 2003, 10.1073/pnas.1635157100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Ondrej Podlaha and Jianzhi Zhang
Positive selection on protein-length in the evolution of a primate sperm ion channel
PNAS 2003 100: 12241-12246; published online before print October 1 2003, 10.1073/pnas.2033555100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Genetics

Rebecca Martone, Ghia Euskirchen, Paul Bertone, Stephen Hartman, Thomas E. Royce, Nicholas M. Luscombe, John L. Rinn, F. Kenneth Nelson, Perry Miller, Mark Gerstein, Sherman Weissman, and Michael Snyder
Distribution of NF-{kappa}B-binding sites across human chromosome 22
PNAS 2003 100: 12247-12252; published online before print October 3 2003, 10.1073/pnas.2135255100 [Abstract] [Full Text] [PDF] [Supporting Tables]  

F. A. Feltus, E. K. Lee, J. F. Costello, C. Plass, and P. M. Vertino
Predicting aberrant CpG island methylation
PNAS 2003 100: 12253-12258; published online before print September 30 2003, 10.1073/pnas.2037852100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Kasper J. Kyng, Alfred May, Steen Kølvraa, and Vilhelm A. Bohr
Gene expression profiling in Werner syndrome closely resembles that of normal aging
PNAS 2003 100: 12259-12264; published online before print October 3 2003, 10.1073/pnas.2130723100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Katica Ilic, Phillip J. SanMiguel, and Jeffrey L. Bennetzen
A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes
PNAS 2003 100: 12265-12270; published online before print October 6 2003, 10.1073/pnas.1434476100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Jessica A. Hurt, Stacey A. Thibodeau, Andrew S. Hirsh, Carl O. Pabo, and J. Keith Joung
Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection
PNAS 2003 100: 12271-12276; published online before print October 3 2003, 10.1073/pnas.2135381100 [Abstract] [Full Text] [PDF]  

Katarina Lehmann, Petra Seemann, Sigmar Stricker, Marai Sammar, Birgit Meyer, Katrin Süring, Frank Majewski, Sigrid Tinschert, Karl-Heinz Grzeschik, Dietmar Müller, Petra Knaus, Peter Nürnberg, and Stefan Mundlos
From the Cover: Mutations in bone morphogenetic protein receptor 1B cause brachydactyly type A2
PNAS 2003 100: 12277-12282; published online before print October 1 2003, 10.1073/pnas.2133476100 [Abstract] [Full Text] [PDF] [Supporting Table]  

Vaishali Parikh, Yin Yao Shugart, Kimberly F. Doheny, Jie Zhang, Lan Li, John Williams, David Hayden, Brian Craig, Hilda Capo, Denise Chamblee, Cathy Chen, Mary Collins, Stuart Dankner, Dean Fiergang, David Guyton, David Hunter, Marcia Hutcheon, Marshall Keys, Nancy Morrison, Michelle Munoz, Marshall Parks, David Plotsky, Eugene Protzko, Michael X. Repka, Maria Sarubbi, Bruce Schnall, R. Michael Siatkowski, Elias Traboulsi, Joanne Waeltermann, and Jeremy Nathans
A strabismus susceptibility locus on chromosome 7p
PNAS 2003 100: 12283-12288; published online before print September 30 2003, 10.1073/pnas.2035118100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Immunology

Anne Mueller, Jani O'Rourke, Pauline Chu, Charles C. Kim, Philip Sutton, Adrian Lee, and Stanley Falkow
Protective immunity against Helicobacter is characterized by a unique transcriptional signature
PNAS 2003 100: 12289-12294; published online before print October 3 2003, 10.1073/pnas.1635231100 [Abstract] [Full Text] [PDF]  

Sheetij Dutta, J. David Haynes, J. Kathleen Moch, Arnoldo Barbosa, and David E. Lanar
Invasion-inhibitory antibodies inhibit proteolytic processing of apical membrane antigen 1 of Plasmodium falciparum merozoites
PNAS 2003 100: 12295-12300; published online before print October 2 2003, 10.1073/pnas.2032858100 [Abstract] [Full Text] [PDF]  

Joung-Woo Hong, Carl E. Allen, and Lai-Chu Wu
Inhibition of NF-{kappa}B by ZAS3, a zinc-finger protein that also binds to the {kappa}B motif
PNAS 2003 100: 12301-12306; published online before print October 6 2003, 10.1073/pnas.2133048100 [Abstract] [Full Text] [PDF]  

Max Löhning, Anne Richter, Torsten Stamm, Jane Hu-Li, Mario Assenmacher, William E. Paul, and Andreas Radbruch
Establishment of memory for IL-10 expression in developing T helper 2 cells requires repetitive IL-4 costimulation and does not impair proliferation
PNAS 2003 100: 12307-12312; published online before print September 26 2003, 10.1073/pnas.2035254100 [Abstract] [Full Text] [PDF]  

Medical Sciences

Hidemasa Oh, Steven B. Bradfute, Teresa D. Gallardo, Teruya Nakamura, Vinciane Gaussin, Yuji Mishina, Jennifer Pocius, Lloyd H. Michael, Richard R. Behringer, Daniel J. Garry, Mark L. Entman, and Michael D. Schneider
Cardiac progenitor cells from adult myocardium: Homing, differentiation, and fusion after infarction
PNAS 2003 100: 12313-12318; published online before print October 6 2003, 10.1073/pnas.2132126100 [Abstract] [Full Text] [PDF]  

Michael L. Whitfield, Deborah R. Finlay, John Isaac Murray, Olga G. Troyanskaya, Jen-Tsan Chi, Alexander Pergamenschikov, Timothy H. McCalmont, Patrick O. Brown, David Botstein, and M. Kari Connolly
Systemic and cell type-specific gene expression patterns in scleroderma skin
PNAS 2003 100: 12319-12324; published online before print October 6 2003, 10.1073/pnas.1635114100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Praveena Gupta, Abigail A. Soyombo, John M. Shelton, Ian G. Wilkofsky, Krystyna E. Wisniewski, James A. Richardson, and Sandra L. Hofmann
Disruption of PPT2 in mice causes an unusual lysosomal storage disorder with neurovisceral features
PNAS 2003 100: 12325-12330; published online before print October 3 2003, 10.1073/pnas.2033229100 [Abstract] [Full Text] [PDF]  

Christopher C. Sullivan, Lingling Du, Danny Chu, Augustine J. Cho, Masakuni Kido, Paul L. Wolf, Stuart W. Jamieson, and Patricia A. Thistlethwaite
Induction of pulmonary hypertension by an angiopoietin 1/TIE2/serotonin pathway
PNAS 2003 100: 12331-12336; published online before print September 25 2003, 10.1073/pnas.1933740100 [Abstract] [Full Text] [PDF] [Supporting Text]  

Paola de Candia, David B. Solit, Dilip Giri, Edi Brogi, Peter M. Siegel, Adam B. Olshen, William J. Muller, Neal Rosen, and Robert Benezra
Angiogenesis impairment in Id-deficient mice cooperates with an Hsp90 inhibitor to completely suppress HER2/neu-dependent breast tumors
PNAS 2003 100: 12337-12342; published online before print October 2 2003, 10.1073/pnas.2031337100 [Abstract] [Full Text] [PDF]  

Katherine R. Kozak, Malaika W. Amneus, Suzanne M. Pusey, Feng Su, Mui N. Luong, Sam A. Luong, Srinivasa T. Reddy, and Robin Farias-Eisner
Identification of biomarkers for ovarian cancer using strong anion-exchange ProteinChips: Potential use in diagnosis and prognosis
PNAS 2003 100: 12343-12348; published online before print October 1 2003, 10.1073/pnas.2033602100 [Abstract] [Full Text] [PDF]  

Subhadra Srinivasan, Brian W. Pogue, Shudong Jiang, Hamid Dehghani, Christine Kogel, Sandra Soho, Jennifer J. Gibson, Tor D. Tosteson, Steven P. Poplack, and Keith D. Paulsen
Interpreting hemoglobin and water concentration, oxygen saturation, and scattering measured in vivo by near-infrared breast tomography
PNAS 2003 100: 12349-12354; published online before print September 26 2003, 10.1073/pnas.2032822100 [Abstract] [Full Text] [PDF]  

Julie R. McMullen, Tetsuo Shioi, Li Zhang, Oleg Tarnavski, Megan C. Sherwood, Peter M. Kang, and Seigo Izumo
Phosphoinositide 3-kinase(p110{alpha}) plays a critical role for the induction of physiological, but not pathological, cardiac hypertrophy
PNAS 2003 100: 12355-12360; published online before print September 24 2003, 10.1073/pnas.1934654100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Danielle B. Ulanet, Michael Torbenson, Chi V. Dang, Livia Casciola-Rosen, and Antony Rosen
Unique conformation of cancer autoantigen B23 in hepatoma: A mechanism for specificity in the autoimmune response
PNAS 2003 100: 12361-12366; published online before print September 30 2003, 10.1073/pnas.2035245100 [Abstract] [Full Text] [PDF] [Supporting Figure]  

K. S. Srinivasa Prasad, Patrick Andre, Ming He, Ming Bao, Jeanne Manganello, and David R. Phillips
Soluble CD40 ligand induces {beta}3 integrin tyrosine phosphorylation and triggers platelet activation by outside-in signaling
PNAS 2003 100: 12367-12371; published online before print September 30 2003, 10.1073/pnas.2032886100 [Abstract] [Full Text] [PDF]  

Yong-Yuan Zhang, Bai-Hua Zhang, Daniel Theele, Samuel Litwin, Eugene Toll, and Jesse Summers
Single-cell analysis of covalently closed circular DNA copy numbers in a hepadnavirus-infected liver
PNAS 2003 100: 12372-12377; published online before print October 3 2003, 10.1073/pnas.2033898100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Yasutomi Kamei, Hiroshi Ohizumi, Yasushi Fujitani, Tomoyuki Nemoto, Toshiya Tanaka, Nobuyuki Takahashi, Teruo Kawada, Masamitsu Miyoshi, Osamu Ezaki, and Akira Kakizuka
PPAR{gamma} coactivator 1{beta}/ERR ligand 1 is an ERR protein ligand, whose expression induces a high-energy expenditure and antagonizes obesity
PNAS 2003 100: 12378-12383; published online before print October 6 2003, 10.1073/pnas.2135217100 [Abstract] [Full Text] [PDF]  

Andreas G. Bader, Katherine A. Felts, Ning Jiang, Hwai Wen Chang, and Peter K. Vogt
Y box-binding protein 1 induces resistance to oncogenic transformation by the phosphatidylinositol 3-kinase pathway
PNAS 2003 100: 12384-12389; published online before print October 6 2003, 10.1073/pnas.2135336100 [Abstract] [Full Text] [PDF]  

Willemijn Vader, Dariusz Stepniak, Yvonne Kooy, Luisa Mearin, Allan Thompson, Jon J. van Rood, Liesbeth Spaenij, and Frits Koning
The HLA-DQ2 gene dose effect in celiac disease is directly related to the magnitude and breadth of gluten-specific T cell responses
PNAS 2003 100: 12390-12395; published online before print October 6 2003, 10.1073/pnas.2135229100 [Abstract] [Full Text] [PDF]  

Microbiology

Dong Yu, Maria C. Silva, and Thomas Shenk
Functional map of human cytomegalovirus AD169 defined by global mutational analysis
PNAS 2003 100: 12396-12401; published online before print September 30 2003, 10.1073/pnas.1635160100 [Abstract] [Full Text] [PDF] [Supporting Table]  

Carlos Lopez-Estraño, Souvik Bhattacharjee, Travis Harrison, and Kasturi Haldar
Cooperative domains define a unique host cell-targeting signal in Plasmodium falciparum-infected erythrocytes
PNAS 2003 100: 12402-12407; published online before print September 26 2003, 10.1073/pnas.2133080100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Brunella Taddeo, Ting Rong Luo, Weiran Zhang, and Bernard Roizman
Activation of NF-{kappa}B in cells productively infected with HSV-1 depends on activated protein kinase R and plays no apparent role in blocking apoptosis
PNAS 2003 100: 12408-12413; published online before print October 6 2003, 10.1073/pnas.2034952100 [Abstract] [Full Text] [PDF]  

Juan Martin-Serrano, Anton Yarovoy, David Perez-Caballero, and Paul D. Bieniasz
Divergent retroviral late-budding domains recruit vacuolar protein sorting factors by using alternative adaptor proteins
PNAS 2003 100: 12414-12419; published online before print September 30 2003, 10.1073/pnas.2133846100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Tsungda Hsu, Suzanne M. Hingley-Wilson, Bing Chen, Mei Chen, Annie Z. Dai, Paul M. Morin, Carolyn B. Marks, Jeevan Padiyar, Celia Goulding, Mari Gingery, David Eisenberg, Robert G. Russell, Steven C. Derrick, Frank M. Collins, Sheldon L. Morris, C. Harold King, and William R. Jacobs, Jr.
The primary mechanism of attenuation of bacillus Calmette–Guérin is a loss of secreted lytic function required for invasion of lung interstitial tissue
PNAS 2003 100: 12420-12425; published online before print October 13 2003, 10.1073/pnas.1635213100 [Abstract] [Full Text] [PDF]  

Isabelle I. Salles, Amy E. Tucker, Daniel E. Voth, and Jimmy D. Ballard
Toxin-induced resistance in Bacillus anthracis lethal toxin-treated macrophages
PNAS 2003 100: 12426-12431; published online before print September 30 2003, 10.1073/pnas.2134042100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Laurel L. Lenz, Sina Mohammadi, Aimee Geissler, and Daniel A. Portnoy
SecA2-dependent secretion of autolytic enzymes promotes Listeria monocytogenes pathogenesis
PNAS 2003 100: 12432-12437; published online before print October 3 2003, 10.1073/pnas.2133653100 [Abstract] [Full Text] [PDF] [Supporting Figure]  

Neuroscience

Zhizhong Dong, Boris Ferger, Jean-Charles Paterna, Denise Vogel, Sven Furler, Maribel Osinde, Joram Feldon, and Hansruedi Büeler
Dopamine-dependent neurodegeneration in rats induced by viral vector-mediated overexpression of the parkin target protein, CDCrel-1
PNAS 2003 100: 12438-12443; published online before print October 6 2003, 10.1073/pnas.2132992100 [Abstract] [Full Text] [PDF]  

William J. Netzer, Fei Dou, Dongming Cai, Darren Veach, Stephanie Jean, Yueming Li, William G. Bornmann, Bayard Clarkson, Huaxi Xu, and Paul Greengard
Gleevec inhibits {beta}-amyloid production but not Notch cleavage
PNAS 2003 100: 12444-12449; published online before print October 1 2003, 10.1073/pnas.1534745100 [Abstract] [Full Text] [PDF]  

J. Breustedt, K. E. Vogt, R. J. Miller, R. A. Nicoll, and D. Schmitz
{alpha}1E-Containing Ca2+ channels are involved in synaptic plasticity
PNAS 2003 100: 12450-12455; published online before print September 30 2003, 10.1073/pnas.2035117100 [Abstract] [Full Text] [PDF]  

Jean-Yves Chatton, Luc Pellerin, and Pierre J. Magistretti
GABA uptake into astrocytes is not associated with significant metabolic cost: Implications for brain imaging of inhibitory transmission
PNAS 2003 100: 12456-12461; published online before print October 6 2003, 10.1073/pnas.2132096100 [Abstract] [Full Text] [PDF]  

Brian J. Bacskai, Gregory A. Hickey, Jesse Skoch, Stephen T. Kajdasz, Yanming Wang, Guo-feng Huang, Chester A. Mathis, William E. Klunk, and Bradley T. Hyman
Four-dimensional multiphoton imaging of brain entry, amyloid binding, and clearance of an amyloid-{beta} ligand in transgenic mice
PNAS 2003 100: 12462-12467; published online before print September 29 2003, 10.1073/pnas.2034101100 [Abstract] [Full Text] [PDF] [Supporting Movies]  

Javier Morante-Oria, Alan Carleton, Barbara Ortino, Eric J. Kremer, Alfonso Fairén, and Pierre-Marie Lledo
Subpallial origin of a population of projecting pioneer neurons during corticogenesis
PNAS 2003 100: 12468-12473; published online before print October 1 2003, 10.1073/pnas.1633692100 [Abstract] [Full Text] [PDF] [Supporting Information]  

Bagrat Amirikian and Apostolos P. Georgopoulos
Modular organization of directionally tuned cells in the motor cortex: Is there a short-range order?
PNAS 2003 100: 12474-12479; published online before print October 1 2003, 10.1073/pnas.2037719100 [Abstract] [Full Text] [PDF]  

Gautam Bhave, Hui-Juan Hu, Kathi S. Glauner, Weiguo Zhu, Haibin Wang, D. J. Brasier, Gerry S. Oxford, and Robert W. Gereau, IV
From The Cover: Protein kinase C phosphorylation sensitizes but does not activate the capsaicin receptor transient receptor potential vanilloid 1 (TRPV1)
PNAS 2003 100: 12480-12485; published online before print October 1 2003, 10.1073/pnas.2032100100 [Abstract] [Full Text] [PDF]  

Laura Gianfranceschi, Rosita Siciliano, Jennifer Walls, Bernardo Morales, Alfredo Kirkwood, Z. Josh Huang, Susumu Tonegawa, and Lamberto Maffei
Visual cortex is rescued from the effects of dark rearing by overexpression of BDNF
PNAS 2003 100: 12486-12491; published online before print September 26 2003, 10.1073/pnas.1934836100 [Abstract] [Full Text] [PDF]  

Maria Korman, Naftali Raz, Tamar Flash, and Avi Karni
Multiple shifts in the representation of a motor sequence during the acquisition of skilled performance
PNAS 2003 100: 12492-12497; published online before print October 6 2003, 10.1073/pnas.2035019100 [Abstract] [Full Text] [PDF]  

Pharmacology