PNAS -- Table of Contents (Oct 5 2004, 101 (40))

Table of Contents

October 5, 2004; 101 (40) [Index By Author] [Cover Photo]

FROM THE COVER

High-throughput protein phase behavior studies

Ribosomal protein response to cell stress

Reverse transcriptase activity by topoisomerase

Genetic variability lacking in malaria parasite

Pollen-mediated gene flow on the landscape level

COMMENTARIES

PERSPECTIVES

PHYSICAL SCIENCES
    Applied Mathematics
    Chemistry
    Physics

SOCIAL SCIENCES
Social Sciences

BIOLOGICAL SCIENCES
    Agricultural Sciences
    Applied Biological Sciences
    Biochemistry
    Biophysics
    Cell Biology
    Developmental Biology
    Evolution

    Immunology
    Medical Sciences
    Microbiology
    Neuroscience
    Pharmacology
    Plant Biology

CORRECTIONS

Access PNAS articles and abstracts: Instruction

COMMENTARIES

Neal F. Lue and Sulin Jiang: Reverse transcriptase at bacterial telomeres
PNAS 2004 101: 14307-14308; published online before print September 28 2004, 10.1073/pnas.0406018101 [Extract] [Full Text] [PDF]
See companion article on page 14361

PERSPECTIVES

Jack D. Dunitz and Harold A. Scheraga: Exercises in prognostication: Crystal structures and protein folding
PNAS 2004 101: 14309-14311; published online before print September 27 2004, 10.1073/pnas.0405744101 [Extract] [Full Text] [PDF]

PHYSICAL SCIENCES

Applied Mathematics

Jean-Pierre Eckmann, Elisha Moses, and Danilo Sergi: Entropy of dialogues creates coherent structures in e-mail traffic
PNAS 2004 101: 14333-14337; published online before print September 24 2004, 10.1073/pnas.0405728101 [Abstract] [Full Text] [PDF]

Chemistry

Alan R. Fersht: Relationship of Leffler (Brønsted) ${alpha}$ values and protein folding ${Phi}$ values to position of transition-state structures on reaction coordinates
PNAS 2004 101: 14338-14342; published online before print September 21 2004, 10.1073/pnas.0406091101 [Abstract] [Full Text] [PDF]

Mircea Cotlet, Sadahiro Masuo, Guobin Luo, Johan Hofkens, Mark Van der Auweraer, Jan Verhoeven, Klaus Müllen, Xiaoliang Sunney Xie, and Frans De Schryver
Probing conformational dynamics in single donor-acceptor synthetic molecules by means of photoinduced reversible electron transfer
PNAS 2004 101: 14343-14348; published online before print September 23 2004, 10.1073/pnas.0406119101 [Abstract] [Full Text] [PDF] [Supporting Information] OPEN ACCESS ARTICLE

Haitao Li, Xiaojun Ren, Liming Ying, Shankar Balasubramanian, and David Klenerman: Measuring single-molecule nucleic acid dynamics in solution by two-color filtered ratiometric fluorescence correlation spectroscopy
PNAS 2004 101: 14425-14430; published online before print September 27 2004, 10.1073/pnas.0404295101 [Abstract] [Full Text] [PDF] [Supporting Information]

Physics

P. W. Fenimore, Hans Frauenfelder, B. H. McMahon, and R. D. Young: Bulk-solvent and hydration-shell fluctuations, similar to ${alpha}$ - and ${beta}$ -fluctuations in glasses, control protein motions and functions
PNAS 2004 101: 14408-14413; published online before print September 24 2004, 10.1073/pnas.0405573101 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE

SOCIAL SCIENCES

Social Sciences

Guy Stecklov and Joshua R. Goldstein: Terror attacks influence driving behavior in Israel
PNAS 2004 101: 14551-14556; published online before print September 24 2004, 10.1073/pnas.0402483101 [Abstract] [Full Text] [PDF] [Supporting Tables]

BIOLOGICAL SCIENCES

Agricultural Sciences

Joachim Messing, Arvind K. Bharti, Wojciech M. Karlowski, Heidrun Gundlach, Hye Ran Kim, Yeisoo Yu, Fusheng Wei, Galina Fuks, Carol A. Soderlund, Klaus F. X. Mayer, and Rod A. Wing: Sequence composition and genome organization of maize
PNAS 2004 101: 14349-14354; published online before print September 23 2004, 10.1073/pnas.0406163101 [Abstract] [Full Text] [PDF] [Supporting Information] OPEN ACCESS ARTICLE

Applied Biological Sciences

Juan P. Liuzzi, Jeffrey A. Bobo, Louis A. Lichten, Don A. Samuelson, and Robert J. Cousins: Responsive transporter genes within the murine intestinal-pancreatic axis form a basis of zinc homeostasis
PNAS 2004 101: 14355-14360; published online before print September 20 2004, 10.1073/pnas.0406216101 [Abstract] [Full Text] [PDF] [Supporting Table]

Biochemistry

Kai Bao and Stanley N. Cohen: From The Cover: Reverse transcriptase activity innate to DNA polymerase I and DNA topoisomerase I proteins of Streptomyces telomere complex
PNAS 2004 101: 14361-14366; published online before print September 7 2004, 10.1073/pnas.0404386101 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE
See Commentary on page 14307

Sung Chul Ha, Neratur K. Lokanath, Dong Van Quyen, Chun Ai Wu, Ky Lowenhaupt, Alexander Rich, Yang-Gyun Kim, and Kyeong Kyu Kim: A poxvirus protein forms a complex with left-handed Z-DNA: Crystal structure of a Yatapoxvirus Z ${alpha}$ bound to DNA
PNAS 2004 101: 14367-14372; published online before print September 24 2004, 10.1073/pnas.0405586101 [Abstract] [Full Text] [PDF] [Supporting Table]

Jing Song, Linda K. Durrin, Thomas A. Wilkinson, Theodore G. Krontiris, and Yuan Chen: Identification of a SUMO-binding motif that recognizes SUMO-modified proteins
PNAS 2004 101: 14373-14378; published online before print September 23 2004, 10.1073/pnas.0403498101 [Abstract] [Full Text] [PDF] [Supporting Information]

Devleena Mazumder-Shivakumar and Thomas C. Bruice: Molecular dynamics studies of ground state and intermediate of the hyperthermophilic indole-3-glycerol phosphate synthase
PNAS 2004 101: 14379-14384; published online before print September 27 2004, 10.1073/pnas.0406002101 [Abstract] [Full Text] [PDF] [Supporting Information]

Tim A. Rand, Krzysztof Ginalski, Nick V. Grishin, and Xiaodong Wang
Biochemical identification of Argonaute 2 as the sole protein required for RNA-induced silencing complex activity
PNAS 2004 101: 14385-14389; published online before print September 27 2004, 10.1073/pnas.0405913101 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE

Krzysztof B. Wicher and Erik Fries: Prohaptoglobin is proteolytically cleaved in the endoplasmic reticulum by the complement C1r-like protein
PNAS 2004 101: 14390-14395; published online before print September 22 2004, 10.1073/pnas.0405692101 [Abstract] [Full Text] [PDF]

Nathan T. Uter and John J. Perona: Long-range intramolecular signaling in a tRNA synthetase complex revealed by pre-steady-state kinetics
PNAS 2004 101: 14396-14401; published online before print September 27 2004, 10.1073/pnas.0404017101 [Abstract] [Full Text] [PDF]

Biophysics

Alan R. Fersht: Relationship of Leffler (Brønsted) ${alpha}$ values and protein folding ${Phi}$ values to position of transition-state structures on reaction coordinates
PNAS 2004 101: 14338-14342; published online before print September 21 2004, 10.1073/pnas.0406091101 [Abstract] [Full Text] [PDF]

Matteo Levantino, Antonio Cupane, László Zimányi, and Pál Ormos: Different relaxations in myoglobin after photolysis
PNAS 2004 101: 14402-14407; published online before print September 22 2004, 10.1073/pnas.0406062101 [Abstract] [Full Text] [PDF]

P. W. Fenimore, Hans Frauenfelder, B. H. McMahon, and R. D. Young
Bulk-solvent and hydration-shell fluctuations, similar to ${alpha}$ - and ${beta}$ -fluctuations in glasses, control protein motions and functions
PNAS 2004 101: 14408-14413; published online before print September 24 2004, 10.1073/pnas.0405573101 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE

Cristiano Viappiani, Stefano Bettati, Stefano Bruno, Luca Ronda, Stefania Abbruzzetti, Andrea Mozzarelli, and William A. Eaton: New insights into allosteric mechanisms from trapping unstable protein conformations in silica gels
PNAS 2004 101: 14414-14419; published online before print September 22 2004, 10.1073/pnas.0405987101 [Abstract] [Full Text] [PDF] [Supporting Information]

Mark R. H. Krebs, Cait E. MacPhee, Aline F. Miller, Iain E. Dunlop, Christopher M. Dobson, and Athene M. Donald: The formation of spherulites by amyloid fibrils of bovine insulin
PNAS 2004 101: 14420-14424; published online before print September 20 2004, 10.1073/pnas.0405933101 [Abstract] [Full Text] [PDF]

Haitao Li, Xiaojun Ren, Liming Ying, Shankar Balasubramanian, and David Klenerman: Measuring single-molecule nucleic acid dynamics in solution by two-color filtered ratiometric fluorescence correlation spectroscopy
PNAS 2004 101: 14425-14430; published online before print September 27 2004, 10.1073/pnas.0404295101 [Abstract] [Full Text] [PDF] [Supporting Information]

Carl L. Hansen, Morten O. A. Sommer, and Stephen R. Quake
From The Cover: Systematic investigation of protein phase behavior with a microfluidic formulator
PNAS 2004 101: 14431-14436; published online before print September 27 2004, 10.1073/pnas.0405847101 [Abstract] [Full Text] [PDF] [Supporting Information]

Christine B. Karim, Tara L. Kirby, Zhiwen Zhang, Yuri Nesmelov, and David D. Thomas: Phospholamban structural dynamics in lipid bilayers probed by a spin label rigidly coupled to the peptide backbone
PNAS 2004 101: 14437-14442; published online before print September 24 2004, 10.1073/pnas.0402801101 [Abstract] [Full Text] [PDF] [Supporting Information]

Cell Biology

Melissa Marino: Inaugural Article by a Recently Elected Academy Member:; Inaugural Article: Biography of Erin K. O'Shea
PNAS 2004 101: 14312-14314; published online before print September 28 2004, 10.1073/pnas.0406675101 [Extract] [Full Text] [PDF]

Rosa M. Marion, Aviv Regev, Eran Segal, Yoseph Barash, Daphne Koller, Nir Friedman, and Erin K. O'Shea
Inaugural Article by a Recently Elected Academy Member:
Inaugural Article: Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression
PNAS 2004 101: 14315-14322; published online before print September 7 2004, 10.1073/pnas.0405353101 [Abstract] [Full Text] [PDF] [Supporting Information] OPEN ACCESS ARTICLE

Yiling Hong and Peter J. Stambrook: Restoration of an absent G₁ arrest and protection from apoptosis in embryonic stem cells after ionizing radiation
PNAS 2004 101: 14443-14448; published online before print September 27 2004, 10.1073/pnas.0401346101 [Abstract] [Full Text] [PDF] [Supporting Figures]

Developmental Biology

Huajing Wan, Yan Xu, Machiko Ikegami, Mildred T. Stahlman, Klaus H. Kaestner, Siew-Lan Ang, and Jeffrey A. Whitsett: Foxa2 is required for transition to air breathing at birth
PNAS 2004 101: 14449-14454; published online before print September 27 2004, 10.1073/pnas.0404424101 [Abstract] [Full Text] [PDF] [Supporting Information]

Evolution

M. C. Leclerc, P. Durand, C. Gauthier, S. Patot, N. Billotte, M. Menegon, C. Severini, F. J. Ayala, and F. Renaud: From The Cover: Meager genetic variability of the human malaria agent Plasmodium vivax
PNAS 2004 101: 14455-14460; published online before print August 24 2004, 10.1073/pnas.0405186101 [Abstract] [Full Text] [PDF] [Supporting Table]

Immunology

Sumito Ogawa, Jean Lozach, Kristen Jepsen, Dominique Sawka-Verhelle, Valentina Perissi, Roman Sasik, David W. Rose, Randall S. Johnson, Michael G. Rosenfeld, and Christopher K. Glass: A nuclear receptor corepressor transcriptional checkpoint controlling activator protein 1-dependent gene networks required for macrophage activation
PNAS 2004 101: 14461-14466; published online before print September 27 2004, 10.1073/pnas.0405786101 [Abstract] [Full Text] [PDF] [Supporting Information] OPEN ACCESS ARTICLE

Mitsutoshi Matsuo, Yasuhiro Nagata, Eiichi Sato, Djordje Atanackovic, Danila Valmori, Yao-Tseng Chen, Gerd Ritter, Ira Mellman, Lloyd J. Old, and Sacha Gnjatic
IFN- ${gamma}$ enables cross-presentation of exogenous protein antigen in human Langerhans cells by potentiating maturation
PNAS 2004 101: 14467-14472; published online before print September 21 2004, 10.1073/pnas.0405947101 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE

Helene C. Dujardin, Odile Burlen-Defranoux, Laurent Boucontet, Paulo Vieira, Ana Cumano, and Antonio Bandeira: Regulatory potential and control of Foxp3 expression in newborn CD4⁺ T cells
PNAS 2004 101: 14473-14478; published online before print September 27 2004, 10.1073/pnas.0403303101 [Abstract] [Full Text] [PDF] [Supporting Information]

Medical Sciences

Jing Chen, Daniel J. DeAngelo, Jeffery L. Kutok, Ifor R. Williams, Benjamin H. Lee, Martha Wadleigh, Nicole Duclos, Sarah Cohen, Jennifer Adelsperger, Rachel Okabe, Allison Coburn, Ilene Galinsky, Brian Huntly, Pamela S. Cohen, Thomas Meyer, Doriano Fabbro, Johannes Roesel, Lolita Banerji, James D. Griffin, Sheng Xiao, Jonathan A. Fletcher, Richard M. Stone, and D. Gary Gilliland: PKC412 inhibits the zinc finger 198-fibroblast growth factor receptor 1 fusion tyrosine kinase and is active in treatment of stem cell myeloproliferative disorder
PNAS 2004 101: 14479-14484; published online before print September 24 2004, 10.1073/pnas.0404438101 [Abstract] [Full Text] [PDF] [Supporting Figure]

Sudha K. Iyengar, Barbara E. K. Klein, Ronald Klein, Gyungah Jun, James H. Schick, Christopher Millard, Rachel Liptak, Karlie Russo, Kristine E. Lee, and Robert C. Elston: Identification of a major locus for age-related cortical cataract on chromosome 6p12-q12 in the Beaver Dam Eye Study
PNAS 2004 101: 14485-14490; published online before print September 27 2004, 10.1073/pnas.0400778101 [Abstract] [Full Text] [PDF] [Supporting Information]

Microbiology

George Y. Liu, Kelly S. Doran, Toby Lawrence, Nicole Turkson, Manuela Puliti, Luciana Tissi, and Victor Nizet: Sword and shield: Linked group B streptococcal ${beta}$ -hemolysin/cytolysin and carotenoid pigment function to subvert host phagocyte defense
PNAS 2004 101: 14491-14496; published online before print September 20 2004, 10.1073/pnas.0406143101 [Abstract] [Full Text] [PDF]

Neeraj K. Surana, Susan Grass, Gail G. Hardy, Huilin Li, David G. Thanassi, and Joseph W. St. Geme, III: Evidence for conservation of architecture and physical properties of Omp85-like proteins throughout evolution
PNAS 2004 101: 14497-14502; published online before print September 20 2004, 10.1073/pnas.0404679101 [Abstract] [Full Text] [PDF] [Supporting Information]

Neuroscience

Tinsley H. Davis: Inaugural Article by a Recently Elected Academy Member:; Inaugural Article: Biography of Vernon M. Ingram
PNAS 2004 101: 14323-14325; published online before print September 28 2004, 10.1073/pnas.0406677101 [Extract] [Full Text] [PDF]

Barbara J. Blanchard, Albert Chen, Leslie M. Rozeboom, Kate A. Stafford, Peter Weigele, and Vernon M. Ingram
Inaugural Article by a Recently Elected Academy Member:
Inaugural Article: Efficient reversal of Alzheimer's disease fibril formation and elimination of neurotoxicity by a small molecule
PNAS 2004 101: 14326-14332; published online before print September 23 2004, 10.1073/pnas.0405941101 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE

Henry Haeberle, Mika Fujiwara, Jody Chuang, Michael M. Medina, Mayuri V. Panditrao, Susanne Bechstedt, Jonathon Howard, and Ellen A. Lumpkin: Molecular profiling reveals synaptic release machinery in Merkel cells
PNAS 2004 101: 14503-14508; published online before print September 24 2004, 10.1073/pnas.0406308101 [Abstract] [Full Text] [PDF] [Supporting Information]

Hiroshi Yamazaki, Mariko Sekiguchi, Masako Takamatsu, Yasuto Tanabe, and Shigetada Nakanishi: Distinct ontogenic and regional expressions of newly identified Cajal-Retzius cell-specific genes during neocorticogenesis
PNAS 2004 101: 14509-14514; published online before print September 27 2004, 10.1073/pnas.0406295101 [Abstract] [Full Text] [PDF] [Supporting Tables]

Nicola J. Broadbent, Larry R. Squire, and Robert E. Clark: Spatial memory, recognition memory, and the hippocampus
PNAS 2004 101: 14515-14520; published online before print September 27 2004, 10.1073/pnas.0406344101 [Abstract] [Full Text] [PDF] [Supporting Information]

Bruno Rossion, Chun-Chia Kung, and Michael J. Tarr: Visual expertise with nonface objects leads to competition with the early perceptual processing of faces in the human occipitotemporal cortex
PNAS 2004 101: 14521-14526; published online before print September 24 2004, 10.1073/pnas.0405613101 [Abstract] [Full Text] [PDF]

Pharmacology

Mark A. Robinson, Stuart T. Charlton, Philippe Garnier, Xiang-tao Wang, Stanley S. Davis, Alan C. Perkins, Malcolm Frier, Ruth Duncan, Tony J. Savage, David A. Wyatt, Susan A. Watson, and Benjamin G. Davis: LEAPT: Lectin-directed enzyme-activated prodrug therapy
PNAS 2004 101: 14527-14532; published online before print September 24 2004, 10.1073/pnas.0303574101 [Abstract] [Full Text] [PDF] [Supporting Information] OPEN ACCESS ARTICLE

Plant Biology

Lidia S. Watrud, E. Henry Lee, Anne Fairbrother, Connie Burdick, Jay R. Reichman, Mike Bollman, Marjorie Storm, George King, and Peter K. Van de Water: From The Cover: Evidence for landscape-level, pollen-mediated gene flow from genetically modified creeping bentgrass with CP4 EPSPS as a marker
PNAS 2004 101: 14533-14538; published online before print September 24 2004, 10.1073/pnas.0405154101 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE

Hisashi Koiwa, Stéphane Hausmann, Woo Young Bang, Akihiro Ueda, Naoko Kondo, Akihiro Hiraguri, Toshiyuki Fukuhara, Jeong Dong Bahk, Dae-Jin Yun, Ray A. Bressan, Paul M. Hasegawa, and Stewart Shuman: Arabidopsis C-terminal domain phosphatase-like 1 and 2 are essential Ser-5-specific C-terminal domain phosphatases
PNAS 2004 101: 14539-14544; published online before print September 23 2004, 10.1073/pnas.0403174101 [Abstract] [Full Text] [PDF] [Supporting Information]

Eric Gelhaye, Nicolas Rouhier, Joelle Gérard, Yves Jolivet, José Gualberto, Nicolas Navrot, Per-Ingvard Ohlsson, Gunnar Wingsle, Masakazu Hirasawa, David B. Knaff, Hongmei Wang, Pierre Dizengremel, Yves Meyer, and Jean-Pierre Jacquot: A specific form of thioredoxin h occurs in plant mitochondria and regulates the alternative oxidase
PNAS 2004 101: 14545-14550; published online before print September 22 2004, 10.1073/pnas.0405282101 [Abstract] [Full Text] [PDF]

CORRECTIONS

Correction for de Parseval et al., Feline immunodeficiency virus targets activated CD4⁺ T cells by using CD134 as a binding receptor, PNAS 2004 101:13044-13049 [Extract] [Full Text] [PDF]