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Table of Contents

December 21, 2004; 101 (51)  [Index By Author]  [Cover Photo]  [Masthead (PDF)]

FROM THE COVER

Arthropod axis elongation and segmentation

Economics and the distribution of exotic plants

Massive mitochondrial gene transfer in angiosperms (A

Massive mitochondrial gene transfer in angiosperms (B

Immune molecule selectively prunes synapses

Circuitry for clustering and fine odor discrimination

COMMENTARIES

PHYSICAL SCIENCES
    Applied Mathematics
    Chemistry
    Computer Sciences
    Geology

SOCIAL SCIENCES
    Anthropology
    Psychology

BIOLOGICAL SCIENCES
    Agricultural Sciences
    Applied Biological Sciences
    Biochemistry
    Biophysics
    Cell Biology
    Developmental Biology
    Ecology
    Environmental Sciences
    Evolution
    Genetics

    Immunology
    Medical Sciences
    Microbiology
    Neuroscience
    Pharmacology
    Physiology

CORRECTIONS

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COMMENTARIES

Odin van der Stelt, Aysenil Belger, and Jeffrey A. Lieberman
Macroscopic fast neuronal oscillations and synchrony in schizophrenia
PNAS 2004 101: 17567-17568; published online before print December 15 2004, 10.1073/pnas.0407688101 [Extract] [Full Text] [PDF]  

Leslie M. Kay
Two minds about odors
PNAS 2004 101: 17569-17570; published online before print December 15 2004, 10.1073/pnas.0408190101 [Extract] [Full Text] [PDF]  
See companion article on page 17861

PHYSICAL SCIENCES

Applied Mathematics

Daan Frenkel
Speed-up of Monte Carlo simulations by sampling of rejected states
PNAS 2004 101: 17571-17575; published online before print December 10 2004, 10.1073/pnas.0407950101 [Abstract] [Full Text] [PDF]  

Chemistry

Daniel Topgaard, Rachel W. Martin, Dimitris Sakellariou, Carlos A. Meriles, and Alexander Pines
"Shim pulses" for NMR spectroscopy and imaging
PNAS 2004 101: 17576-17581; published online before print December 9 2004, 10.1073/pnas.0408296102 [Abstract] [Full Text] [PDF]  

Janine Mauzeroll, Allen J. Bard, Omeed Owhadian, and Terrence J. Monks
Menadione metabolism to thiodione in hepatoblastoma by scanning electrochemical microscopy
PNAS 2004 101: 17582-17587; published online before print December 15 2004, 10.1073/pnas.0407613101 [Abstract] [Full Text] [PDF] [Supporting Text]  

Xin Yang, Xue-Bin Wang, Erich R. Vorpagel, and Lai-Sheng Wang
Direct experimental observation of the low ionization potentials of guanine in free oligonucleotides by using photoelectron spectroscopy
PNAS 2004 101: 17588-17592; published online before print December 10 2004, 10.1073/pnas.0405157101 [Abstract] [Full Text] [PDF] [Supporting Information]  

Patrick E. McGovern, Juzhong Zhang, Jigen Tang, Zhiqing Zhang, Gretchen R. Hall, Robert A. Moreau, Alberto Nuñez, Eric D. Butrym, Michael P. Richards, Chen-shan Wang, Guangsheng Cheng, Zhijun Zhao, and Changsui Wang
Fermented beverages of pre- and proto-historic China
PNAS 2004 101: 17593-17598; published online before print December 8 2004, 10.1073/pnas.0407921102 [Abstract] [Full Text] [PDF]  

Computer Sciences

C. Lee Giles and Isaac G. Councill
Who gets acknowledged: Measuring scientific contributions through automatic acknowledgment indexing
PNAS 2004 101: 17599-17604; published online before print December 15 2004, 10.1073/pnas.0407743101 [Abstract] [Full Text] [PDF]  

Geology

A. Z. Krug and M. E. Patzkowsky
Rapid recovery from the Late Ordovician mass extinction
PNAS 2004 101: 17605-17610; published online before print December 13 2004, 10.1073/pnas.0405199102 [Abstract] [Full Text] [PDF] [Supporting Text]  

SOCIAL SCIENCES

Anthropology

Patrick E. McGovern, Juzhong Zhang, Jigen Tang, Zhiqing Zhang, Gretchen R. Hall, Robert A. Moreau, Alberto Nuñez, Eric D. Butrym, Michael P. Richards, Chen-shan Wang, Guangsheng Cheng, Zhijun Zhao, and Changsui Wang
Fermented beverages of pre- and proto-historic China
PNAS 2004 101: 17593-17598; published online before print December 8 2004, 10.1073/pnas.0407921102 [Abstract] [Full Text] [PDF]  

Psychology

Heekyeong Park, Joseph Quinlan, Edward Thornton, and Lynne M. Reder
The effect of midazolam on visual search: Implications for understanding amnesia
PNAS 2004 101: 17879-17883; published online before print December 13 2004, 10.1073/pnas.0408075101 [Abstract] [Full Text] [Figures Only] [PDF] OPEN ACCESS ARTICLE  

BIOLOGICAL SCIENCES

Agricultural Sciences

Le Kang, XiangYong Chen, Yan Zhou, BoWan Liu, Wei Zheng, RuiQiang Li, Jun Wang, and Jun Yu
The analysis of large-scale gene expression correlated to the phase changes of the migratory locust
PNAS 2004 101: 17611-17615; published online before print December 9 2004, 10.1073/pnas.0407753101 [Abstract] [Full Text] [PDF] [Supporting Information] OPEN ACCESS ARTICLE  

Applied Biological Sciences

David W. Colby, YiJia Chu, John P. Cassady, Martin Duennwald, Helen Zazulak, Jack M. Webster, Anne Messer, Susan Lindquist, Vernon Martin Ingram, and K. Dane Wittrup
Potent inhibition of huntingtin aggregation and cytotoxicity by a disulfide bond-free single-domain intracellular antibody
PNAS 2004 101: 17616-17621; published online before print December 14 2004, 10.1073/pnas.0408134101 [Abstract] [Full Text] [PDF]  

Biochemistry

Jennifer L. Best, Carlos A. Amezcua, Bernhard Mayr, Lawrence Flechner, Christopher M. Murawsky, Beverly Emerson, Tsaffrir Zor, Kevin H. Gardner, and Marc Montminy
Identification of small-molecule antagonists that inhibit an activator:coactivator interaction
PNAS 2004 101: 17622-17627; published online before print December 7 2004, 10.1073/pnas.0406374101 [Abstract] [Full Text] [PDF] [Supporting Figures]  

Hang Shi, Olivier Cordin, C. Michael Minder, Patrick Linder, and Rui-Ming Xu
Crystal structure of the human ATP-dependent splicing and export factor UAP56
PNAS 2004 101: 17628-17633; published online before print December 7 2004, 10.1073/pnas.0408172101 [Abstract] [Full Text] [PDF]  

Ping Wu and Peng Wang
Per-Arnt-Sim domain-dependent association of cAMP-phosphodiesterase 8A1 with I{kappa}B proteins
PNAS 2004 101: 17634-17639; published online before print December 13 2004, 10.1073/pnas.0407649101 [Abstract] [Full Text] [PDF]  

Biophysics

Michael Grabe, Harold Lecar, Yuh Nung Jan, and Lily Yeh Jan
A quantitative assessment of models for voltage-dependent gating of ion channels
PNAS 2004 101: 17640-17645; published online before print December 10 2004, 10.1073/pnas.0408116101 [Abstract] [Full Text] [PDF] [Supporting Information]  

Victor Muñoz and Jose M. Sanchez-Ruiz
Exploring protein-folding ensembles: A variable-barrier model for the analysis of equilibrium unfolding experiments
PNAS 2004 101: 17646-17651; published online before print December 9 2004, 10.1073/pnas.0405829101 [Abstract] [Full Text] [PDF] [Supporting Information]  

Marc P. Scherer and Anthony W. Gummer
Vibration pattern of the organ of Corti up to 50 kHz: Evidence for resonant electromechanical force
PNAS 2004 101: 17652-17657; published online before print December 10 2004, 10.1073/pnas.0408232101 [Abstract] [Full Text] [PDF] [Supporting Information] OPEN ACCESS ARTICLE  

Motonori Ota, Mitsunori Ikeguchi, and Akinori Kidera
Phylogeny of protein-folding trajectories reveals a unique pathway to native structure
PNAS 2004 101: 17658-17663; published online before print December 10 2004, 10.1073/pnas.0407015102 [Abstract] [Full Text] [PDF]  

Albina Orlova, Alexander Shvetsov, Vitold E. Galkin, Dmitry S. Kudryashov, Peter A. Rubenstein, Edward H. Egelman, and Emil Reisler
Actin-destabilizing factors disrupt filaments by means of a time reversal of polymerization
PNAS 2004 101: 17664-17668; published online before print December 10 2004, 10.1073/pnas.0407525102 [Abstract] [Full Text] [PDF]  

Vincent Noireaux and Albert Libchaber
A vesicle bioreactor as a step toward an artificial cell assembly
PNAS 2004 101: 17669-17674; published online before print December 10 2004, 10.1073/pnas.0408236101 [Abstract] [Full Text] [PDF]  

Sam Hay, Brett B. Wallace, Trevor A. Smith, Kenneth P. Ghiggino, and Tom Wydrzynski
Protein engineering of cytochrome b562 for quinone binding and light-induced electron transfer
PNAS 2004 101: 17675-17680; published online before print December 7 2004, 10.1073/pnas.0406192101 [Abstract] [Full Text] [PDF] [Supporting Figures]  

Ervin Welker, Kosuke Maki, M. C. Ramachandra Shastry, Darmawi Juminaga, Rajiv Bhat, Harold A. Scheraga, and Heinrich Roder
Ultrarapid mixing experiments shed new light on the characteristics of the initial conformational ensemble during the folding of ribonuclease A
PNAS 2004 101: 17681-17686; published online before print December 1 2004, 10.1073/pnas.0407999101 [Abstract] [Full Text] [PDF]  

Cell Biology

Benjamin de Bivort, Sui Huang, and Yaneer Bar-Yam
Dynamics of cellular level function and regulation derived from murine expression array data
PNAS 2004 101: 17687-17692; published online before print December 14 2004, 10.1073/pnas.0406707102 [Abstract] [Full Text] [PDF] [Supporting Information]  

Toshinori Iwahara, Tsuyoshi Akagi, Yuki Fujitsuka, and Hidesaburo Hanafusa
CrkII regulates focal adhesion kinase activation by making a complex with Crk-associated substrate, p130Cas
PNAS 2004 101: 17693-17698; published online before print December 14 2004, 10.1073/pnas.0408413102 [Abstract] [Full Text] [PDF]  

David W. Koh, Ann M. Lawler, Marc F. Poitras, Masayuki Sasaki, Sigrid Wattler, Michael C. Nehls, Tobias Stöger, Guy G. Poirier, Valina L. Dawson, and Ted M. Dawson
Failure to degrade poly(ADP-ribose) causes increased sensitivity to cytotoxicity and early embryonic lethality
PNAS 2004 101: 17699-17704; published online before print December 10 2004, 10.1073/pnas.0406182101 [Abstract] [Full Text] [PDF]  

Fabiana C. Morales, Yoko Takahashi, Erica L. Kreimann, and Maria-Magdalena Georgescu
Ezrin–radixin–moesin (ERM)-binding phosphoprotein 50 organizes ERM proteins at the apical membrane of polarized epithelia
PNAS 2004 101: 17705-17710; published online before print December 10 2004, 10.1073/pnas.0407974101 [Abstract] [Full Text] [PDF]  

Developmental Biology

Tijana Copf, Reinhard Schröder, and Michalis Averof
From the Cover: Ancestral role of caudal genes in axis elongation and segmentation
PNAS 2004 101: 17711-17715; published online before print December 14 2004, 10.1073/pnas.0407327102 [Abstract] [Full Text] [PDF]  

Masataka Okabe and Anthony Graham
The origin of the parathyroid gland
PNAS 2004 101: 17716-17719; published online before print December 10 2004, 10.1073/pnas.0406116101 [Abstract] [Full Text] [PDF]  

Ecology

Javier Ruiz, Diego Macías, and Francesc Peters
Turbulence increases the average settling velocity of phytoplankton cells
PNAS 2004 101: 17720-17724; published online before print December 15 2004, 10.1073/pnas.0401539101 [Abstract] [Full Text] [PDF]  

Environmental Sciences

Brad W. Taylor and Rebecca E. Irwin
From the Cover: Linking economic activities to the distribution of exotic plants
PNAS 2004 101: 17725-17730; published online before print December 9 2004, 10.1073/pnas.0405176101 [Abstract] [Full Text] [PDF]  

Evolution

Douglas L. Altshuler, Robert Dudley, and Jimmy A. McGuire
Resolution of a paradox: Hummingbird flight at high elevation does not come without a cost
PNAS 2004 101: 17731-17736; published online before print December 14 2004, 10.1073/pnas.0405260101 [Abstract] [Full Text] [PDF] [Supporting Information]  

Frauke Baymann, Evelyne Lebrun, and Wolfgang Nitschke
Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome
PNAS 2004 101: 17737-17740; published online before print December 10 2004, 10.1073/pnas.0407442101 [Abstract] [Full Text] [PDF] [Supporting Figure]  

Yangrae Cho, Jeffrey P. Mower, Yin-Long Qiu, and Jeffrey D. Palmer
From the Cover: Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants
PNAS 2004 101: 17741-17746; published online before print December 14 2004, 10.1073/pnas.0408302101 [Abstract] [Full Text] [PDF] [Supporting Information]  

Ulfar Bergthorsson, Aaron O. Richardson, Gregory J. Young, Leslie R. Goertzen, and Jeffrey D. Palmer
From the Cover: Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella
PNAS 2004 101: 17747-17752; published online before print December 14 2004, 10.1073/pnas.0408336102 [Abstract] [Full Text] [PDF] [Supporting Figures]  

Charles E. Linn, Jr., Hattie R. Dambroski, Jeffrey L. Feder, Stewart H. Berlocher, Satoshi Nojima, and Wendell L. Roelofs
Postzygotic isolating factor in sympatric speciation in Rhagoletis flies: Reduced response of hybrids to parental host-fruit odors
PNAS 2004 101: 17753-17758; published online before print December 10 2004, 10.1073/pnas.0408255101 [Abstract] [Full Text] [PDF] [Supporting Table]  

Genetics

Maria Carolina N. Marchetto, Alysson R. Muotri, Dennis K. Burns, Errol C. Friedberg, and Carlos F. M. Menck
Gene transduction in skin cells: Preventing cancer in xeroderma pigmentosum mice
PNAS 2004 101: 17759-17764; published online before print December 14 2004, 10.1073/pnas.0406304101 [Abstract] [Full Text] [PDF]  

Michael T. Barrett, Alicia Scheffer, Amir Ben-Dor, Nick Sampas, Doron Lipson, Robert Kincaid, Peter Tsang, Bo Curry, Kristin Baird, Paul S. Meltzer, Zohar Yakhini, Laurakay Bruhn, and Stephen Laderman
Comparative genomic hybridization using oligonucleotide microarrays and total genomic DNA
PNAS 2004 101: 17765-17770; published online before print December 10 2004, 10.1073/pnas.0407979101 [Abstract] [Full Text] [PDF] [Supporting Information] OPEN ACCESS ARTICLE  

Eric J. White, Olof Emanuelsson, David Scalzo, Thomas Royce, Steven Kosak, Edward J. Oakeley, Sherman Weissman, Mark Gerstein, Mark Groudine, Michael Snyder, and Dirk Schübeler
DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states
PNAS 2004 101: 17771-17776; published online before print December 10 2004, 10.1073/pnas.0408170101 [Abstract] [Full Text] [PDF]  

Joseph T. Wade and Kevin Struhl
Association of RNA polymerase with transcribed regions in Escherichia coli
PNAS 2004 101: 17777-17782; published online before print December 13 2004, 10.1073/pnas.0404305101 [Abstract] [Full Text] [PDF] [Supporting Tables]  

Immunology

Siew Heng Wong, Laura Santambrogio, and Jack L. Strominger
Caspases and nitric oxide broadly regulate dendritic cell maturation and surface expression of class II MHC proteins
PNAS 2004 101: 17783-17788; published online before print December 14 2004, 10.1073/pnas.0408229102 [Abstract] [Full Text] [PDF] [Supporting Information]  

Xiangao Huang, Maurizio Di Liberto, Adam F. Cunningham, Lin Kang, Shuhua Cheng, Scott Ely, Hsiou-chi Liou, Ian C. M. MacLennan, and Selina Chen-Kiang
Homeostatic cell-cycle control by BLyS: Induction of cell-cycle entry but not G1/S transition in opposition to p18INK4c and p27Kip1
PNAS 2004 101: 17789-17794; published online before print December 10 2004, 10.1073/pnas.0406111101 [Abstract] [Full Text] [PDF] [Supporting Figure] OPEN ACCESS ARTICLE  

Medical Sciences

Daniel Teupser, Stephanos Pavlides, Marietta Tan, Jose-Carlos Gutierrez-Ramos, Roland Kolbeck, and Jan L. Breslow
Major reduction of atherosclerosis in fractalkine (CX3CL1)-deficient mice is at the brachiocephalic artery, not the aortic root
PNAS 2004 101: 17795-17800; published online before print December 13 2004, 10.1073/pnas.0408096101 [Abstract] [Full Text] [PDF]  

Norikazu Maeda, Tohru Funahashi, Toshiyuki Hibuse, Azumi Nagasawa, Ken Kishida, Hiroshi Kuriyama, Tadashi Nakamura, Shinji Kihara, Iichiro Shimomura, and Yuji Matsuzawa
Adaptation to fasting by glycerol transport through aquaporin 7 in adipose tissue
PNAS 2004 101: 17801-17806; published online before print December 10 2004, 10.1073/pnas.0406230101 [Abstract] [Full Text] [PDF]  

Motohiro Kobayashi, Junya Mitoma, Naoshi Nakamura, Tsutomu Katsuyama, Jun Nakayama, and Minoru Fukuda
Induction of peripheral lymph node addressin in human gastric mucosa infected by Helicobacter pylori
PNAS 2004 101: 17807-17812; published online before print December 9 2004, 10.1073/pnas.0407503101 [Abstract] [Full Text] [PDF] [Supporting Information]  

Annabel F. Valledor, Li-Chung Hsu, Sumito Ogawa, Dominique Sawka-Verhelle, Michael Karin, and Christopher K. Glass
Activation of liver X receptors and retinoid X receptors prevents bacterial-induced macrophage apoptosis
PNAS 2004 101: 17813-17818; published online before print December 15 2004, 10.1073/pnas.0407749101 [Abstract] [Full Text] [PDF]  

Koji M. Nishiguchi, James S. Friedman, Michael A. Sandberg, Anand Swaroop, Eliot L. Berson, and Thaddeus P. Dryja
Recessive NRL mutations in patients with clumped pigmentary retinal degeneration and relative preservation of blue cone function
PNAS 2004 101: 17819-17824; published online before print December 9 2004, 10.1073/pnas.0408183101 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE  

Qing Jiang, Jeffrey Wong, Henrik Fyrst, Julie D. Saba, and Bruce N. Ames
{gamma}-Tocopherol or combinations of vitamin E forms induce cell death in human prostate cancer cells by interrupting sphingolipid synthesis
PNAS 2004 101: 17825-17830; published online before print December 13 2004, 10.1073/pnas.0408340102 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE  

Microbiology

C. Iftode and S. J. Flint
Viral DNA synthesis-dependent titration of a cellular repressor activates transcription of the human adenovirus type 2 IVa2 gene
PNAS 2004 101: 17831-17836; published online before print December 9 2004, 10.1073/pnas.0407786101 [Abstract] [Full Text] [PDF]  

Mark Achtman, Giovanna Morelli, Peixuan Zhu, Thierry Wirth, Ines Diehl, Barica Kusecek, Amy J. Vogler, David M. Wagner, Christopher J. Allender, W. Ryan Easterday, Viviane Chenal-Francisque, Patricia Worsham, Nicholas R. Thomson, Julian Parkhill, Luther E. Lindler, Elisabeth Carniel, and Paul Keim
Microevolution and history of the plague bacillus, Yersinia pestis
PNAS 2004 101: 17837-17842; published online before print December 14 2004, 10.1073/pnas.0408026101 [Abstract] [Full Text] [PDF] [Supporting Information] OPEN ACCESS ARTICLE  

Neuroscience

Alexandre L. R. Oliveira, Sebastian Thams, Olle Lidman, Fredrik Piehl, Tomas Hökfelt, Klas Kärre, Hans Lindå, and Staffan Cullheim
From The Cover: A role for MHC class I molecules in synaptic plasticity and regeneration of neurons after axotomy
PNAS 2004 101: 17843-17848; published online before print December 10 2004, 10.1073/pnas.0408154101 [Abstract] [Full Text] [PDF] [Supporting Text]  
See Commentary on page 3

Jonathan R. Wolpaw and Dennis J. McFarland
Control of a two-dimensional movement signal by a noninvasive brain-computer interface in humans
PNAS 2004 101: 17849-17854; published online before print December 7 2004, 10.1073/pnas.0403504101 [Abstract] [Full Text] [PDF] [Supporting Movie] OPEN ACCESS ARTICLE  

Rodolfo R. Llinás, Mutsuyuki Sugimori, Kimberly A. Moran, Jorge E. Moreira, and Mitsunori Fukuda
Vesicular reuptake inhibition by a synaptotagmin I C2B domain antibody at the squid giant synapse
PNAS 2004 101: 17855-17860; published online before print December 10 2004, 10.1073/pnas.0408200101 [Abstract] [Full Text] [PDF]  

Ehud Sivan and Nancy Kopell
From The Cover: Mechanism and circuitry for clustering and fine discrimination of odors in insects
PNAS 2004 101: 17861-17866; published online before print December 8 2004, 10.1073/pnas.0407858101 [Abstract] [Full Text] [PDF]  
See Commentary on page 17569

Pharmacology

Tao Jiang, Emilia S. Olson, Quyen T. Nguyen, Melinda Roy, Patricia A. Jennings, and Roger Y. Tsien
Tumor imaging by means of proteolytic activation of cell-penetrating peptides
PNAS 2004 101: 17867-17872; published online before print December 15 2004, 10.1073/pnas.0408191101 [Abstract] [Full Text] [PDF] [Supporting Information] OPEN ACCESS ARTICLE  

Physiology

Yong Zhao, Todd Scheuer, and William A. Catterall
Reversed voltage-dependent gating of a bacterial sodium channel with proline substitutions in the S6 transmembrane segment
PNAS 2004 101: 17873-17878; published online before print December 6 2004, 10.1073/pnas.0408270101 [Abstract] [Full Text] [PDF]  

CORRECTIONS

Correction for Kurokawa et al., Regulatory actions of the A-kinase anchoring protein Yotiao on a heart potassium channel downstream of PKA phosphorylation, PNAS 2004 101:16374-16378 [Extract] [Full Text] [PDF]  

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