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IN THIS ISSUE

This Week in PNAS
PNAS 2005 102: 12647-12648. [Full Text] [Figures Only] [PDF]  

COMMENTARIES

Jonathan W. Yewdell and Heather D. Hickman-Miller

Back to the fold: T cell recognition of HFE, a MHC class Ib molecule that regulates iron metabolism
PNAS 2005 102: 12649-12650; published online before print August 29 2005, 10.1073/pnas.0506002102 [Extract] [Full Text] [PDF]  
See companion article on page 12855

Terry B. Strom

Saving islets from allograft rejection
PNAS 2005 102: 12651-12652; published online before print August 29 2005, 10.1073/pnas.0506079102 [Extract] [Full Text] [PDF]  
See companion article on page 12153 in issue 34 of volume 102

PHYSICAL SCIENCES

Applied Physical Sciences

Nadine Nassif, Nicola Pinna, Nicole Gehrke, Markus Antonietti, Christian Jäger, and Helmut Cölfen

Amorphous layer around aragonite platelets in nacre
PNAS 2005 102: 12653-12655; published online before print August 29 2005, 10.1073/pnas.0502577102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figure]  

Chemistry

Arun Radhakrishnan and Harden McConnell

Condensed complexes in vesicles containing cholesterol and phospholipids
PNAS 2005 102: 12662-12666; published online before print August 24 2005, 10.1073/pnas.0506043102 [Abstract] [Full Text] [Figures Only] [PDF]  

Zhenhong Yu and William Klemperer

Asymmetry in angular rigidity of hydrogen-bonded complexes
PNAS 2005 102: 12667-12669; published online before print August 22 2005, 10.1073/pnas.0506325102 [Abstract] [Full Text] [Figures Only] [PDF]  

Mathematics

Max Forester and Colin Rourke

The adjunction problem over torsion-free groups
PNAS 2005 102: 12670-12671; published online before print August 25 2005, 10.1073/pnas.0502940102 [Abstract] [Full Text] [PDF]  

SOCIAL SCIENCES

BIOLOGICAL SCIENCES

Applied Biological Sciences

Nadine Nassif, Nicola Pinna, Nicole Gehrke, Markus Antonietti, Christian Jäger, and Helmut Cölfen

Amorphous layer around aragonite platelets in nacre
PNAS 2005 102: 12653-12655; published online before print August 29 2005, 10.1073/pnas.0502577102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figure]  

M. Muralidhar Reddy and Thomas Kodadek

Protein "fingerprinting" in complex mixtures with peptoid microarrays
PNAS 2005 102: 12672-12677; published online before print August 25 2005, 10.1073/pnas.0501208102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figures]  

Hal Alper, Curt Fischer, Elke Nevoigt, and Gregory Stephanopoulos

Tuning genetic control through promoter engineering
PNAS 2005 102: 12678-12683; published online before print August 25 2005, 10.1073/pnas.0504604102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Biochemistry

Luigi De Colibus, Min Li, Claudia Binda, Ariel Lustig, Dale E. Edmondson, and Andrea Mattevi

Three-dimensional structure of human monoamine oxidase A (MAO A): Relation to the structures of rat MAO A and human MAO B
PNAS 2005 102: 12684-12689; published online before print August 29 2005, 10.1073/pnas.0505975102 [Abstract] [Full Text] [Figures Only] [PDF]  

Lulu Huang, Lou Massa, and Jerome Karle

Kernel energy method: Application to insulin
PNAS 2005 102: 12690-12693; published online before print August 24 2005, 10.1073/pnas.0506378102 [Abstract] [Full Text] [Figures Only] [PDF]  

Peter V. Cornish, Mirko Hennig, and David P. Giedroc

A loop 2 cytidine-stem 1 minor groove interaction as a positive determinant for pseudoknot-stimulated –1 ribosomal frameshifting
PNAS 2005 102: 12694-12699; published online before print August 25 2005, 10.1073/pnas.0506166102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Yuxin Mao, Francesca Senic-Matuglia, Pier Paolo Di Fiore, Simona Polo, Michael E. Hodsdon, and Pietro De Camilli Deubiquitinating function of ataxin-3: Insights from the solution structure of the Josephin domain PNAS 2005 102: 12700-12705; published online before print August 23 2005, 10.1073/pnas.0506344102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information] OPEN ACCESS ARTICLE

Ciming Li, Oihana Capendeguy, Käthi Geering, and Jean-Daniel Horisberger

A third Na⁺-binding site in the sodium pump
PNAS 2005 102: 12706-12711; published online before print August 25 2005, 10.1073/pnas.0505980102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Biophysics

Arun Radhakrishnan and Harden McConnell

Condensed complexes in vesicles containing cholesterol and phospholipids
PNAS 2005 102: 12662-12666; published online before print August 24 2005, 10.1073/pnas.0506043102 [Abstract] [Full Text] [Figures Only] [PDF]  

J. Nathan Henderson and S. James Remington

Crystal structures and mutational analysis of amFP486, a cyan fluorescent protein from Anemonia majano
PNAS 2005 102: 12712-12717; published online before print August 24 2005, 10.1073/pnas.0502250102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Mohammed Terrak, Grzegorz Rebowski, Renne C. Lu, Zenon Grabarek, and Roberto Dominguez

Structure of the light chain-binding domain of myosin V
PNAS 2005 102: 12718-12723; published online before print August 24 2005, 10.1073/pnas.0503899102 [Abstract] [Full Text] [Figures Only] [PDF]  

Daniel N. Bolon, Robert A. Grant, Tania A. Baker, and Robert T. Sauer

Specificity versus stability in computational protein design
PNAS 2005 102: 12724-12729; published online before print August 29 2005, 10.1073/pnas.0506124102 [Abstract] [Full Text] [Figures Only] [PDF]  

Leo C. James and Dan S. Tawfik

Structure and kinetics of a transient antibody binding intermediate reveal a kinetic discrimination mechanism in antigen recognition
PNAS 2005 102: 12730-12735; published online before print August 29 2005, 10.1073/pnas.0500909102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Tao Bai, Michael Becker, Aditi Gupta, Phillip Strike, Vince J. Murphy, Robin F. Anders, and Adrian H. Batchelor

Structure of AMA1 from Plasmodium falciparum reveals a clustering of polymorphisms that surround a conserved hydrophobic pocket
PNAS 2005 102: 12736-12741; published online before print August 29 2005, 10.1073/pnas.0501808102 [Abstract] [Full Text] [Figures Only] [PDF]  

Igor N. Berezovsky and Eugene I. Shakhnovich Physics and evolution of thermophilic adaptation PNAS 2005 102: 12742-12747; published online before print August 24 2005, 10.1073/pnas.0503890102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information] OPEN ACCESS ARTICLE

Reto Horst, Eric B. Bertelsen, Jocelyne Fiaux, Gerhard Wider, Arthur L. Horwich, and Kurt Wüthrich From the Cover: Direct NMR observation of a substrate protein bound to the chaperonin GroEL PNAS 2005 102: 12748-12753; published online before print August 22 2005, 10.1073/pnas.0505642102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figure] OPEN ACCESS ARTICLE   See Commentary on page 13715

Cell Biology

Jin-Ah Kwon and Alexander Rich

Biological function of the vaccinia virus Z-DNA-binding protein E3L: Gene transactivation and antiapoptotic activity in HeLa cells
PNAS 2005 102: 12759-12764; published online before print August 26 2005, 10.1073/pnas.0506011102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Mireille J. Aleman, Maurice Phil DeYoung, Matthew Tress, Patricia Keating, Gary W. Perry, and Ramaswamy Narayanan

Inhibition of Single Minded 2 gene expression mediates tumor-selective apoptosis and differentiation in human colon cancer cells
PNAS 2005 102: 12765-12770; published online before print August 29 2005, 10.1073/pnas.0505484102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Tables]  

Jordan U. Gutterman, Hong T. Lai, Peirong Yang, Valsala Haridas, Amos Gaikwad, and Stevan Marcus

Effects of the tumor inhibitory triterpenoid avicin G on cell integrity, cytokinesis, and protein ubiquitination in fission yeast
PNAS 2005 102: 12771-12776; published online before print August 23 2005, 10.1073/pnas.0505758102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figure]  

Tania A. Wong, Gregory D. Fairn, Pak P. Poon, Maya Shmulevitz, Christopher R. McMaster, Richard A. Singer, and Gerald C. Johnston

Membrane metabolism mediated by Sec14 family members influences Arf GTPase activating protein activity for transport from the trans-Golgi
PNAS 2005 102: 12777-12782; published online before print August 26 2005, 10.1073/pnas.0506156102 [Abstract] [Full Text] [Figures Only] [PDF]  

Adam C. Resnick, Adele M. Snowman, Bingnan N. Kang, K. Joseph Hurt, Solomon H. Snyder, and Adolfo Saiardi

Inositol polyphosphate multikinase is a nuclear PI3-kinase with transcriptional regulatory activity
PNAS 2005 102: 12783-12788; published online before print August 25 2005, 10.1073/pnas.0506184102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figures]  

Yue-Xuan Wu, Lois E. Greene, Daniel C. Masison, and Evan Eisenberg Curing of yeast [PSI+] prion by guanidine inactivation of Hsp104 does not require cell division PNAS 2005 102: 12789-12794; published online before print August 25 2005, 10.1073/pnas.0506384102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figures] OPEN ACCESS ARTICLE

Evolution

Kerry M. Oliver, Nancy A. Moran, and Martha S. Hunter

Variation in resistance to parasitism in aphids is due to symbionts not host genotype
PNAS 2005 102: 12795-12800; published online before print August 24 2005, 10.1073/pnas.0506131102 [Abstract] [Full Text] [Figures Only] [PDF]  

Allison Miller and Barbara Schaal

Domestication of a Mesoamerican cultivated fruit tree, Spondias purpurea
PNAS 2005 102: 12801-12806; published online before print August 26 2005, 10.1073/pnas.0505447102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Tables] [Supporting Tables]  

Michael R. Bogwitz, Henry Chung, Lorin Magoc, Sheena Rigby, Wayn Wong, Melanie O'Keefe, John A. McKenzie, Philip Batterham, and Phillip J. Daborn

Cyp12a4 confers lufenuron resistance in a natural population of Drosophila melanogaster
PNAS 2005 102: 12807-12812; published online before print August 24 2005, 10.1073/pnas.0503709102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Infomation]  

Daehyun Baek and Phil Green Sequence conservation, relative isoform frequencies, and nonsense-mediated decay in evolutionarily conserved alternative splicing PNAS 2005 102: 12813-12818; published online before print August 25 2005, 10.1073/pnas.0506139102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information] OPEN ACCESS ARTICLE

Maria J. Martin, Julian C. Rayner, Pascal Gagneux, John W. Barnwell, and Ajit Varki

Evolution of human-chimpanzee differences in malaria susceptibility: Relationship to human genetic loss of N-glycolylneuraminic acid
PNAS 2005 102: 12819-12824; published online before print August 26 2005, 10.1073/pnas.0503819102 [Abstract] [Full Text] [Figures Only] [PDF]  

Genetics

Eric D. Ross, Herman K. Edskes, Michael J. Terry, and Reed B. Wickner

Primary sequence independence for prion formation
PNAS 2005 102: 12825-12830; published online before print August 25 2005, 10.1073/pnas.0506136102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Tables]  

Heping Lin, Kevin J. Mann, Elena Starostina, Ronald D. Kinser, and Claudio W. Pikielny

A Drosophila DEG/ENaC channel subunit is required for male response to female pheromones
PNAS 2005 102: 12831-12836; published online before print August 29 2005, 10.1073/pnas.0506420102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figures]  

John D. Storey, Wenzhong Xiao, Jeffrey T. Leek, Ronald G. Tompkins, and Ronald W. Davis

Significance analysis of time course microarray experiments
PNAS 2005 102: 12837-12842; published online before print September 2 2005, 10.1073/pnas.0504609102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Michelle Carter, Xu Chen, Bozena Slowinska, Sharon Minnerath, Sara Glickstein, Lei Shi, Fabien Campagne, Harel Weinstein, and M. Elizabeth Ross

Crooked tail (Cd) model of human folate-responsive neural tube defects is mutated in Wnt coreceptor lipoprotein receptor-related protein 6
PNAS 2005 102: 12843-12848; published online before print August 26 2005, 10.1073/pnas.0501963102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

John W. Drake, Anna Bebenek, Grace E. Kissling, and Shyamal Peddada

Clusters of mutations from transient hypermutability
PNAS 2005 102: 12849-12854; published online before print August 23 2005, 10.1073/pnas.0503009102 [Abstract] [Full Text] [PDF] [Supporting Information]  

Immunology

Helga Schneider, Elke Valk, Silvy da Rocha Dias, Bin Wei, and Christopher E. Rudd CTLA-4 up-regulation of lymphocyte function-associated antigen 1 adhesion and clustering as an alternate basis for coreceptor function PNAS 2005 102: 12861-12866; published online before print August 26 2005, 10.1073/pnas.0505802102 [Abstract] [Full Text] [Figures Only] [PDF] OPEN ACCESS ARTICLE

Louise Swainson, Sandrina Kinet, Nicolas Manel, Jean-Luc Battini, Marc Sitbon, and Naomi Taylor

Glucose transporter 1 expression identifies a population of cycling CD4⁺CD8⁺ human thymocytes with high CXCR4-induced chemotaxis
PNAS 2005 102: 12867-12872; published online before print August 26 2005, 10.1073/pnas.0503603102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Medical Sciences

Brian C. Capell, Michael R. Erdos, James P. Madigan, James J. Fiordalisi, Renee Varga, Karen N. Conneely, Leslie B. Gordon, Channing J. Der, Adrienne D. Cox, and Francis S. Collins

Inhibiting farnesylation of progerin prevents the characteristic nuclear blebbing of Hutchinson-Gilford progeria syndrome
PNAS 2005 102: 12879-12884; published online before print August 29 2005, 10.1073/pnas.0506001102 [Abstract] [Full Text] [Figures Only] [PDF]  

Priti Chugh, Hittu Matta, Sandra Schamus, Sunny Zachariah, Arvind Kumar, James A. Richardson, Alice L. Smith, and Preet M. Chaudhary

Constitutive NF-B activation, normal Fas-induced apoptosis, and increased incidence of lymphoma in human herpes virus 8 K13 transgenic mice
PNAS 2005 102: 12885-12890; published online before print August 24 2005, 10.1073/pnas.0408577102 [Abstract] [Full Text] [Figures Only] [PDF]  

Tobias Allander, Martti T. Tammi, Margareta Eriksson, Annelie Bjerkner, Annika Tiveljung-Lindell, and Björn Andersson From The Cover: Cloning of a human parvovirus by molecular screening of respiratory tract samples PNAS 2005 102: 12891-12896; published online before print August 23 2005, 10.1073/pnas.0504666102 [Abstract] [Full Text] [Figures Only] [PDF]

Damon R. Asher, Anna M. Cerny, and Robert W. Finberg

The erythrocyte viral trap: Transgenic expression of viral receptor on erythrocytes attenuates coxsackievirus B infection
PNAS 2005 102: 12897-12902; published online before print August 25 2005, 10.1073/pnas.0506211102 [Abstract] [Full Text] [Figures Only] [PDF]  

Elisabetta Bianchi, Marco Finotto, Paolo Ingallinella, Renee Hrin, Anthony V. Carella, Xiaoli S. Hou, William A. Schleif, Michael D. Miller, Romas Geleziunas, and Antonello Pessi

Covalent stabilization of coiled coils of the HIV gp41 N region yields extremely potent and broad inhibitors of viral infection
PNAS 2005 102: 12903-12908; published online before print August 29 2005, 10.1073/pnas.0502449102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Microbiology

Céline Pujol, Jens P. Grabenstein, Robert D. Perry, and James B. Bliska

Replication of Yersinia pestis in interferon -activated macrophages requires ripA, a gene encoded in the pigmentation locus
PNAS 2005 102: 12909-12914; published online before print August 24 2005, 10.1073/pnas.0502849102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Erich Hoffmann, Aleksandr S. Lipatov, Richard J. Webby, Elena A. Govorkova, and Robert G. Webster

Role of specific hemagglutinin amino acids in the immunogenicity and protection of H5N1 influenza virus vaccines
PNAS 2005 102: 12915-12920; published online before print August 23 2005, 10.1073/pnas.0506416102 [Abstract] [Full Text] [Figures Only] [PDF]  

Vijay Panchanathan, Geeta Chaudhri, and Gunasegaran Karupiah

Interferon function is not required for recovery from a secondary poxvirus infection
PNAS 2005 102: 12921-12926; published online before print August 25 2005, 10.1073/pnas.0505180102 [Abstract] [Full Text] [Figures Only] [PDF]  

Zhengyu Wei, Lauren A. Zenewicz, and Howard Goldfine

Listeria monocytogenes phosphatidylinositol-specific phospholipase C has evolved for virulence by greatly reduced activity on GPI anchors
PNAS 2005 102: 12927-12931; published online before print August 23 2005, 10.1073/pnas.0501725102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Alexi I. Goranov, Luba Katz, Adam M. Breier, Christopher B. Burge, and Alan D. Grossman

A transcriptional response to replication status mediated by the conserved bacterial replication protein DnaA
PNAS 2005 102: 12932-12937; published online before print August 24 2005, 10.1073/pnas.0506174102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Neuroscience

Jeffrey S. Mogil, Frank Miermeister, Frank Seifert, Kate Strasburg, Katharina Zimmermann, Heiko Reinold, Jean-Sebastien Austin, Nadia Bernardini, Elissa J. Chesler, Heiko A. Hofmann, Christian Hordo, Karl Messlinger, Kumar V. S. Nemmani, Andrew L. Rankin, Jennifer Ritchie, Angela Siegling, Shad B. Smith, Susana Sotocinal, Axel Vater, Sonya G. Lehto, Sven Klussmann, Remi Quirion, Martin Michaelis, Marshall Devor, and Peter W. Reeh

Variable sensitivity to noxious heat is mediated by differential expression of the CGRP gene
PNAS 2005 102: 12938-12943; published online before print August 23 2005, 10.1073/pnas.0503264102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Aljoscha Nern, Louis-Vu T. Nguyen, Tory Herman, Saurabh Prakash, Thomas R. Clandinin, and S. Lawrence Zipursky From The Cover: An isoform-specific allele of Drosophila N-cadherin disrupts a late step of R7 targeting PNAS 2005 102: 12944-12949; published online before print August 25 2005, 10.1073/pnas.0502888102 [Abstract] [Full Text] [Figures Only] [PDF] OPEN ACCESS ARTICLE

Tetsuo Koyama, John G. McHaffie, Paul J. Laurienti, and Robert C. Coghill

The subjective experience of pain: Where expectations become reality
PNAS 2005 102: 12950-12955; published online before print September 6 2005, 10.1073/pnas.0408576102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Alon Bajayo, Inbal Goshen, Sharon Feldman, Valer Csernus, Kerstin Iverfeldt, Esther Shohami, Raz Yirmiya, and Itai Bab

Central IL-1 receptor signaling regulates bone growth and mass
PNAS 2005 102: 12956-12961; published online before print August 26 2005, 10.1073/pnas.0502562102 [Abstract] [Full Text] [Figures Only] [PDF]  

Pharmacology

S. S. Dharap, Y. Wang, P. Chandna, J. J. Khandare, B. Qiu, S. Gunaseelan, P. J. Sinko, S. Stein, A. Farmanfarmaian, and T. Minko

Tumor-specific targeting of an anticancer drug delivery system by LHRH peptide
PNAS 2005 102: 12962-12967; published online before print August 25 2005, 10.1073/pnas.0504274102 [Abstract] [Full Text] [Figures Only] [PDF]  

Plant Biology

Véronique Amiard, Kristine E. Mueh, Barbara Demmig-Adams, Volker Ebbert, Robert Turgeon, and William W. Adams, III

Anatomical and photosynthetic acclimation to the light environment in species with differing mechanisms of phloem loading
PNAS 2005 102: 12968-12973; published online before print August 24 2005, 10.1073/pnas.0503784102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Tables]  

Javier Narváez-Vásquez, Gregory Pearce, and Clarence A. Ryan

The plant cell wall matrix harbors a precursor of defense signaling peptides
PNAS 2005 102: 12974-12977; published online before print August 26 2005, 10.1073/pnas.0505248102 [Abstract] [Full Text] [Figures Only] [PDF]  

Chengxia Li, Thomas Potuschak, Adán Colón-Carmona, Rodrigo A. Gutiérrez, and Peter Doerner

Arabidopsis TCP20 links regulation of growth and cell division control pathways
PNAS 2005 102: 12978-12983; published online before print August 25 2005, 10.1073/pnas.0504039102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Zhixin Xie, Edwards Allen, April Wilken, and James C. Carrington

DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana
PNAS 2005 102: 12984-12989; published online before print August 29 2005, 10.1073/pnas.0506426102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Xinyan Li, Huiqiong Lin, Weiguo Zhang, Yan Zou, Jie Zhang, Xiaoyan Tang, and Jian-Min Zhou

Flagellin induces innate immunity in nonhost interactions that is suppressed by Pseudomonas syringae effectors
PNAS 2005 102: 12990-12995; published online before print August 25 2005, 10.1073/pnas.0502425102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

CORRECTIONS

Correction for Lin et al., From the Cover: A universal telomerase RNA core structure includes structured motifs required for binding the telomerase reverse transcriptase protein, PNAS 2004 101:14713-14718 [Extract] [Full Text] [Figures Only] [PDF]  

Correction for Akbar et al., Docosahexaenoic acid: A positive modulator of Akt signaling in neuronal survival, PNAS 2005 102:10858-10863 [Extract] [Full Text] [Figures Only] [PDF]  

Correction for Jendreyko et al., Phenotypic knockout of VEGF-R2 and Tie-2 with an intradiabody reduces tumor growth and angiogenesis in vivo, PNAS 2005 102:8293-8298 [Extract] [Full Text] [PDF]