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IN THIS ISSUE

PNAS 2005 102: 14123-14124. [Full Text] [Figures Only] [PDF]  

COMMENTARIES

Amiram Grinvald

Imaging input and output dynamics of neocortical networks in vivo: Exciting times ahead
PNAS 2005 102: 14125-14126; published online before print September 27 2005, 10.1073/pnas.0506755102 [Extract] [Full Text] [Figures Only] [PDF]  
See companion article on page 14063 in issue 39 of volume 102

William F. Morgan and Marianne B. Sowa

Effects of ionizing radiation in nonirradiated cells
PNAS 2005 102: 14127-14128; published online before print September 26 2005, 10.1073/pnas.0507119102 [Extract] [Full Text] [Figures Only] [PDF]  
See companion article on page 14203

PROFILES

Tinsley H. Davis

Profile of Tom A. Rapoport
PNAS 2005 102: 14129-14131; published online before print September 26 2005, 10.1073/pnas.0506177102 [Extract] [Full Text] [Figures Only] [PDF]  

Bijal Trivedi

Profile of A. Catharine Ross
PNAS 2005 102: 14139-14141; published online before print September 26 2005, 10.1073/pnas.0506178102 [Extract] [Full Text] [Figures Only] [PDF]  

PHYSICAL SCIENCES

Applied Mathematics

Wei Biao Wu

Nonlinear system theory: Another look at dependence
PNAS 2005 102: 14150-14154; published online before print September 22 2005, 10.1073/pnas.0506715102 [Abstract] [Full Text] [PDF]  

Applied Physical Sciences

Byung Hee Hong, Joshua P. Small, Meninder S. Purewal, Asher Mullokandov, Matthew Y. Sfeir, Feng Wang, Ju Young Lee, Tony F. Heinz, Louis E. Brus, Philip Kim, and Kwang S. Kim

Extracting subnanometer single shells from ultralong multiwalled carbon nanotubes
PNAS 2005 102: 14155-14158; published online before print September 26 2005, 10.1073/pnas.0505219102 [Abstract] [Full Text] [Figures Only] [PDF]  

Hiroshi Noguchi and Gerhard Gompper

Shape transitions of fluid vesicles and red blood cells in capillary flows
PNAS 2005 102: 14159-14164; published online before print September 26 2005, 10.1073/pnas.0504243102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Chemistry

Jared D. Smith, Christopher D. Cappa, Kevin R. Wilson, Ronald C. Cohen, Phillip L. Geissler, and Richard J. Saykally

Unified description of temperature-dependent hydrogen-bond rearrangements in liquid water
PNAS 2005 102: 14171-14174; published online before print September 22 2005, 10.1073/pnas.0506899102 [Abstract] [Full Text] [Figures Only] [PDF]  

Dominik Horinek and Josef Michl

Surface-mounted altitudinal molecular rotors in alternating electric field: Single-molecule parametric oscillator molecular dynamics
PNAS 2005 102: 14175-14180; published online before print September 26 2005, 10.1073/pnas.0506183102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Movies]  

Environmental Sciences

Steven D. Miller, Steven H. D. Haddock, Christopher D. Elvidge, and Thomas F. Lee

Detection of a bioluminescent milky sea from space
PNAS 2005 102: 14181-14184; published online before print September 26 2005, 10.1073/pnas.0507253102 [Abstract] [Full Text] [Figures Only] [PDF]  

George W. Kling, William C. Evans, Greg Tanyileke, Minoru Kusakabe, Takeshi Ohba, Yutaka Yoshida, and Joseph V. Hell From The Cover: Degassing Lakes Nyos and Monoun: Defusing certain disaster PNAS 2005 102: 14185-14190; published online before print September 26 2005, 10.1073/pnas.0502274102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figure]

Physics

BIOLOGICAL SCIENCES

Anthropology

Debbie Guatelli-Steinberg, Donald J. Reid, Thomas A. Bishop, and Clark Spencer Larsen

Anterior tooth growth periods in Neandertals were comparable to those of modern humans
PNAS 2005 102: 14197-14202; published online before print September 23 2005, 10.1073/pnas.0503108102 [Abstract] [Full Text] [Figures Only] [PDF]  

Applied Biological Sciences

Kazuto Morozumi and Ryuzo Yanagimachi

Incorporation of the acrosome into the oocyte during intracytoplasmic sperm injection could be potentially hazardous to embryo development
PNAS 2005 102: 14209-14214; published online before print September 23 2005, 10.1073/pnas.0507005102 [Abstract] [Full Text] [Figures Only] [PDF]  

Biochemistry

Luca Domenico D'Andrea, Guido Iaccarino, Roberto Fattorusso, Daniela Sorriento, Concetta Carannante, Domenica Capasso, Bruno Trimarco, and Carlo Pedone

Targeting angiogenesis: Structural characterization and biological properties of a de novo engineered VEGF mimicking peptide
PNAS 2005 102: 14215-14220; published online before print September 26 2005, 10.1073/pnas.0505047102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Karen McLuskey, Scott Cameron, Friedrich Hammerschmidt, and William N. Hunter Structure and reactivity of hydroxypropylphosphonic acid epoxidase in fosfomycin biosynthesis by a cation- and flavin-dependent mechanism PNAS 2005 102: 14221-14226; published online before print September 26 2005, 10.1073/pnas.0504314102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information] OPEN ACCESS ARTICLE

Prolay Das and Gary B. Schuster

Effect of condensate formation on long-distance radical cation migration in DNA
PNAS 2005 102: 14227-14231; published online before print September 21 2005, 10.1073/pnas.0506778102 [Abstract] [Full Text] [Figures Only] [PDF]  

Dong-Sun Lee, Eva Flachsová, Michaela Bodnárová, Borries Demeler, Pavel Martásek, and C. S. Raman Structural basis of hereditary coproporphyria PNAS 2005 102: 14232-14237; published online before print September 21 2005, 10.1073/pnas.0506557102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information] OPEN ACCESS ARTICLE

Takahiro Nobukuni, Manel Joaquin, Marta Roccio, Stephen G. Dann, So Young Kim, Pawan Gulati, Maya P. Byfield, Jonathan M. Backer, Francois Natt, Johannes L. Bos, Fried J. T. Zwartkruis, and George Thomas

Amino acids mediate mTOR/raptor signaling through activation of class 3 phosphatidylinositol 3OH-kinase
PNAS 2005 102: 14238-14243; published online before print September 21 2005, 10.1073/pnas.0506925102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figure]  

Lucia Monaco, Ullas Kolthur-Seetharam, Romain Loury, Josiane Ménissier-de Murcia, Gilbert de Murcia, and Paolo Sassone-Corsi

Inhibition of Aurora-B kinase activity by poly(ADP-ribosyl)ation in response to DNA damage
PNAS 2005 102: 14244-14248; published online before print September 22 2005, 10.1073/pnas.0506252102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figures]  

Christophe Pichon and Brice Felden From The Cover: Small RNA genes expressed from Staphylococcus aureusgenomic and pathogenicity islands with specific expression among pathogenic strains PNAS 2005 102: 14249-14254; published online before print September 23 2005, 10.1073/pnas.0503838102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting information]

Kerney Jebrell Glover, Eranthie Weerapana, and Barbara Imperiali

In vitro assembly of the undecaprenylpyrophosphate-linked heptasaccharide for prokaryotic N-linked glycosylation
PNAS 2005 102: 14255-14259; published online before print September 26 2005, 10.1073/pnas.0507311102 [Abstract] [Full Text] [Figures Only] [PDF]  

Cosima Fonte, Julien Grenier, Amalia Trousson, Anne Chauchereau, Olivier Lahuna, Etienne-Emile Baulieu, Michael Schumacher, and Charbel Massaad

Involvement of -catenin and unusual behavior of CBP and p300 in glucocorticosteroid signaling in Schwann cells
PNAS 2005 102: 14260-14265; published online before print September 26 2005, 10.1073/pnas.0506930102 [Abstract] [Full Text] [Figures Only] [PDF]  

Biophysics

Lan Ma, John Wagner, John Jeremy Rice, Wenwei Hu, Arnold J. Levine, and Gustavo A. Stolovitzky

A plausible model for the digital response of p53 to DNA damage
PNAS 2005 102: 14266-14271; published online before print September 26 2005, 10.1073/pnas.0501352102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Sarah A. Petty and Sean M. Decatur

Intersheet rearrangement of polypeptides during nucleation of -sheet aggregates
PNAS 2005 102: 14272-14277; published online before print September 21 2005, 10.1073/pnas.0502804102 [Abstract] [Full Text] [Figures Only] [PDF]  

Sanguk Kim, Tae-Joon Jeon, Amit Oberai, Duan Yang, Jacob J. Schmidt, and James U. Bowie

Transmembrane glycine zippers: Physiological and pathological roles in membrane proteins
PNAS 2005 102: 14278-14283; published online before print September 22 2005, 10.1073/pnas.0501234102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Jie Yao, Daniel R. Larson, Harshad D. Vishwasrao, Warren R. Zipfel, and Watt W. Webb

Blinking and nonradiant dark fraction of water-soluble quantum dots in aqueous solution
PNAS 2005 102: 14284-14289; published online before print September 16 2005, 10.1073/pnas.0506523102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Cell Biology

Moshe Pritsker, Tirza T. Doniger, Laurie C. Kramer, Stephanie E. Westcot, and Ihor R. Lemischka

Diversification of stem cell molecular repertoire by alternative splicing
PNAS 2005 102: 14290-14295; published online before print September 23 2005, 10.1073/pnas.0502132102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Brendan N. Lilley and Hidde L. Ploegh

Multiprotein complexes that link dislocation, ubiquitination, and extraction of misfolded proteins from the endoplasmic reticulum membrane
PNAS 2005 102: 14296-14301; published online before print September 26 2005, 10.1073/pnas.0505014102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Buom-Yong Ryu, Hiroshi Kubota, Mary R. Avarbock, and Ralph L. Brinster

Conservation of spermatogonial stem cell self-renewal signaling between mouse and rat
PNAS 2005 102: 14302-14307; published online before print September 23 2005, 10.1073/pnas.0506970102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Jin Woo Kim, Myung Jin Kim, Kwang Je Kim, Hee Jae Yun, Ji Soo Chae, Sang Gil Hwang, Tong-Shin Chang, Hee-Sae Park, Kang-Woo Lee, Pyung-Lim Han, Ssang-Goo Cho, Tae-Wan Kim, and Eui-Ju Choi

Notch interferes with the scaffold function of JNK-interacting protein 1 to inhibit the JNK signaling pathway
PNAS 2005 102: 14308-14313; published online before print September 22 2005, 10.1073/pnas.0501600102 [Abstract] [Full Text] [Figures Only] [PDF]  

Christina Berube, Louis-Martin Boucher, Weili Ma, Andrew Wakeham, Leonardo Salmena, Razqallah Hakem, Wen-Chen Yeh, Tak W. Mak, and Samuel Benchimol

Apoptosis caused by p53-induced protein with death domain (PIDD) depends on the death adapter protein RAIDD
PNAS 2005 102: 14314-14320; published online before print September 23 2005, 10.1073/pnas.0506475102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Alan K. Howe, Linda C. Baldor, and Brian P. Hogan

Spatial regulation of the cAMP-dependent protein kinase during chemotactic cell migration
PNAS 2005 102: 14320-14325; published online before print September 21 2005, 10.1073/pnas.0507072102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Developmental Biology

Evolution

Robert G. Beiko, Timothy J. Harlow, and Mark A. Ragan

Highways of gene sharing in prokaryotes
PNAS 2005 102: 14332-14337; published online before print September 21 2005, 10.1073/pnas.0504068102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

D. Allan Drummond, Jesse D. Bloom, Christoph Adami, Claus O. Wilke, and Frances H. Arnold

Why highly expressed proteins evolve slowly
PNAS 2005 102: 14338-14343; published online before print September 21 2005, 10.1073/pnas.0504070102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Genetics

Joann B. Sweasy, Tieming Lang, Daniela Starcevic, Ka-Wai Sun, Char-Chang Lai, Daniel DiMaio, and Shibani Dalal

Expression of DNA polymerase cancer-associated variants in mouse cells results in cellular transformation
PNAS 2005 102: 14350-14355; published online before print September 22 2005, 10.1073/pnas.0505166102 [Abstract] [Full Text] [Figures Only] [PDF]  

Immunology

Ching-Yu Huang, Barry P. Sleckman, and Osami Kanagawa

Revision of T cell receptor chain genes is required for normal T lymphocyte development
PNAS 2005 102: 14356-14361; published online before print September 26 2005, 10.1073/pnas.0505564102 [Abstract] [Full Text] [Figures Only] [PDF]  

Thomas Perlot, Frederick W. Alt, Craig H. Bassing, Heikyung Suh, and Eric Pinaud

Elucidation of IgH intronic enhancer functions via germ-line deletion
PNAS 2005 102: 14362-14367; published online before print September 26 2005, 10.1073/pnas.0507090102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Leopoldo Laricchia-Robbio, Tomohiko Tamura, Tatiana Karpova, Brian L. Sprague, James G. McNally, and Keiko Ozato

Partner-regulated interaction of IFN regulatory factor 8 with chromatin visualized in live macrophages
PNAS 2005 102: 14368-14373; published online before print September 23 2005, 10.1073/pnas.0504014102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Benjamin J. Marsland, Chiara Nembrini, Nicole Schmitz, Brian Abel, Stefan Krautwald, Martin F. Bachmann, and Manfred Kopf

Innate signals compensate for the absence of PKC- during in vivo CD8+ T cell effector and memory responses
PNAS 2005 102: 14374-14379; published online before print September 26 2005, 10.1073/pnas.0506250102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figures]  

F. H. Hsieh, P. Sharma, A. Gibbons, T. Goggans, S. C. Erzurum, and S. J. Haque

Human airway epithelial cell determinants of survival and functional phenotype for primary human mast cells
PNAS 2005 102: 14380-14385; published online before print September 26 2005, 10.1073/pnas.0503948102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Medical Sciences

Sohail Z. Husain, Priyajit Prasad, Wayne M. Grant, Thomas R. Kolodecik, Michael H. Nathanson, and Fred S. Gorelick

The ryanodine receptor mediates early zymogen activation in pancreatitis
PNAS 2005 102: 14386-14391; published online before print September 26 2005, 10.1073/pnas.0503215102 [Abstract] [Full Text] [Figures Only] [PDF]  

Maria Pilar Bayona-Bafaluy, Bas Blits, Brendan J. Battersby, Eric A. Shoubridge, and Carlos T. Moraes

Rapid directional shift of mitochondrial DNA heteroplasmy in animal tissues by a mitochondrially targeted restriction endonuclease
PNAS 2005 102: 14392-14397; published online before print September 22 2005, 10.1073/pnas.0502896102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

J. C. Y. Wang, J. K. Warner, N. Erdmann, P. M. Lansdorp, L. Harrington, and J. E. Dick

Dissociation of telomerase activity and telomere length maintenance in primitive human hematopoietic cells
PNAS 2005 102: 14398-14403; published online before print September 19 2005, 10.1073/pnas.0504161102 [Abstract] [Full Text] [Figures Only] [PDF]  

Jan Grimm, David G. Kirsch, Stephen D. Windsor, Carla F. Bender Kim, Philip M. Santiago, Vasilis Ntziachristos, Tyler Jacks, and Ralph Weissleder

Use of gene expression profiling to direct in vivo molecular imaging of lung cancer
PNAS 2005 102: 14404-14409; published online before print September 23 2005, 10.1073/pnas.0503920102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Y. Mizue, S. Ghani, L. Leng, C. McDonald, P. Kong, J. Baugh, S. J. Lane, J. Craft, J. Nishihira, S. C. Donnelly, Z. Zhu, and R. Bucala

Role for macrophage migration inhibitory factor in asthma
PNAS 2005 102: 14410-14415; published online before print September 26 2005, 10.1073/pnas.0507189102 [Abstract] [Full Text] [Figures Only] [PDF]  

Monica P. Mallampalli, Gregory Huyer, Pravin Bendale, Michael H. Gelb, and Susan Michaelis

Inhibiting farnesylation reverses the nuclear morphology defect in a HeLa cell model for Hutchinson-Gilford progeria syndrome
PNAS 2005 102: 14416-14421; published online before print September 26 2005, 10.1073/pnas.0503712102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figures]  

Microbiology

Linfong Tzeng and Mitchell Singer DNA replication during sporulation in Myxococcus xanthus fruiting bodies PNAS 2005 102: 14428-14433; published online before print September 23 2005, 10.1073/pnas.0506969102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Movie] OPEN ACCESS ARTICLE

Neuroscience

Ashish A. Bagal, Joseph P. Y. Kao, Cha-Min Tang, and Scott M. Thompson

Long-term potentiation of exogenous glutamate responses at single dendritic spines
PNAS 2005 102: 14434-14439; published online before print September 26 2005, 10.1073/pnas.0501956102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Methods]  

Harel Z. Shouval

Clusters of interacting receptors can stabilize synaptic efficacies
PNAS 2005 102: 14440-14445; published online before print September 27 2005, 10.1073/pnas.0506934102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

N. Devidze, J. A. Mong, A. M. Jasnow, L.-M. Kow, and D. W. Pfaff

Sex and estrogenic effects on coexpression of mRNAs in single ventromedial hypothalamic neurons
PNAS 2005 102: 14446-14451; published online before print September 26 2005, 10.1073/pnas.0507144102 [Abstract] [Full Text] [Figures Only] [PDF]  

Pharmacology

Ramona S. Scotland, Marc Cohen, Paul Foster, Matthew Lovell, Anthony Mathur, Amrita Ahluwalia, and Adrian J. Hobbs

C-type natriuretic peptide inhibits leukocyte recruitment and platelet-leukocyte interactions via suppression of P-selectin expression
PNAS 2005 102: 14452-14457; published online before print September 22 2005, 10.1073/pnas.0504961102 [Abstract] [Full Text] [Figures Only] [PDF]  

Plant Biology

Gareth S. Catchpole, Manfred Beckmann, David P. Enot, Madhav Mondhe, Britta Zywicki, Janet Taylor, Nigel Hardy, Aileen Smith, Ross D. King, Douglas B. Kell, Oliver Fiehn, and John Draper

Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops
PNAS 2005 102: 14458-14462; published online before print September 26 2005, 10.1073/pnas.0503955102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Peter V. Bozhkov, Maria F. Suarez, Lada H. Filonova, Geoffrey Daniel, Andrey A. Zamyatnin, Jr., Salvador Rodriguez-Nieto, Boris Zhivotovsky, and Andrei Smertenko

Cysteine protease mcII-Pa executes programmed cell death during plant embryogenesis
PNAS 2005 102: 14463-14468; published online before print September 23 2005, 10.1073/pnas.0506948102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Cheng-Ran Xu, Cui Liu, Yi-Lan Wang, Lin-Chen Li, Wen-Qian Chen, Zhi-Hong Xu, and Shu-Nong Bai

Histone acetylation affects expression of cellular patterning genes in the Arabidopsis root epidermis
PNAS 2005 102: 14469-14474; published online before print September 21 2005, 10.1073/pnas.0503143102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

CORRECTIONS

Correction for Huang et al., Kernel energy method: Application to insulin, PNAS 2005 102:12690-12693 [Extract] [Full Text] [PDF]  

Correction for Kohn et al., Random-coil behavior and the dimensions of chemically unfolded proteins, PNAS 2004 101:12491-12496 [Extract] [Full Text] [PDF]  

Correction for Sella et al., The application of statistical physics to evolutionary biology, PNAS 2005 102:9541-9546 [Extract] [Full Text] [PDF]  

errata for Kabir et al., Loss and gain of chromosome 5 controls growth of Candida albicans on sorbose due to dispersed redundant negative regulators, PNAS 2005 102:12147-12152 [Extract] [Full Text] [PDF]