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Table of Contents

February 15, 2005; 102 (7)  [Index By Author]  [Cover Photo]  [Masthead (PDF)]

FROM THE COVER

H2 and bioenergetics in geothermal ecosystems

Nanoparticle detection of pathogenic biomarker

Multisensory cues in frog behavior

Comparative genomics identifies noncoding RNAs

Grammar emergence in a new language

IN THIS ISSUE

COMMENTARIES

PHYSICAL SCIENCES
    Applied Physical Sciences
    Chemistry
    Computer Sciences
    Engineering
    Physics

SOCIAL SCIENCES
    Anthropology
    Social Sciences

BIOLOGICAL SCIENCES
    Biochemistry
    Biophysics
    Cell Biology
    Developmental Biology
    Ecology
    Evolution
    Genetics

    Immunology
    Medical Sciences
    Microbiology
    Neuroscience
    Pharmacology
    Physiology
    Plant Biology

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IN THIS ISSUE

This Week in PNAS
PNAS 2005 102: 2261. [Full Text] [Figures Only] [PDF]  

COMMENTARIES

Christine D. Keating
Nanoscience enables ultrasensitive detection of Alzheimer's biomarker
PNAS 2005 102: 2263-2264; published online before print February 9 2005, 10.1073/pnas.0500024102 [Extract] [Full Text] [Figures Only] [PDF]  
See companion article on page 2273

Jeffrey Skolnick
Putting the pathway back into protein folding
PNAS 2005 102: 2265-2266; published online before print February 9 2005, 10.1073/pnas.0500128102 [Extract] [Full Text] [Figures Only] [PDF]  
See companion article on page 2362

Ron Hoy
Animal awareness: The (un)binding of multisensory cues in decision making by animals
PNAS 2005 102: 2267-2268; published online before print February 9 2005, 10.1073/pnas.0500093102 [Extract] [Full Text] [PDF]  
See companion article on page 2425

Vincent Moulton
Tracking down noncoding RNAs
PNAS 2005 102: 2269-2270; published online before print February 9 2005, 10.1073/pnas.0500129102 [Extract] [Full Text] [PDF]  
See companion article on page 2454

Susan Goldin-Meadow
Watching language grow
PNAS 2005 102: 2271-2272; published online before print February 9 2005, 10.1073/pnas.0500166102 [Extract] [Full Text] [PDF]  
See companion article on page 2661

PHYSICAL SCIENCES

Applied Physical Sciences

Dimitra G. Georganopoulou, Lei Chang, Jwa-Min Nam, C. Shad Thaxton, Elliott J. Mufson, William L. Klein, and Chad A. Mirkin
From The Cover: Nanoparticle-based detection in cerebral spinal fluid of a soluble pathogenic biomarker for Alzheimer's disease
PNAS 2005 102: 2273-2276; published online before print February 4 2005, 10.1073/pnas.0409336102 [Abstract] [Full Text] [Figures Only] [PDF]  
See Commentary on page 2263

Idan Tuval, Luis Cisneros, Christopher Dombrowski, Charles W. Wolgemuth, John O. Kessler, and Raymond E. Goldstein
Bacterial swimming and oxygen transport near contact lines
PNAS 2005 102: 2277-2282; published online before print February 7 2005, 10.1073/pnas.0406724102 [Abstract] [Full Text] [Figures Only] [PDF]  

John R. Spear, Jeffrey J. Walker, Thomas M. McCollom, and Norman R. Pace
From The Cover: Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem
PNAS 2005 102: 2555-2560; published online before print January 25 2005, 10.1073/pnas.0409574102 [Abstract] [Full Text] [Figures Only] [PDF]  
See Commentary on page 3889

Chemistry

Hairong Ma and Martin Gruebele
Kinetics are probe-dependent during downhill folding of an engineered {lambda}6–85 protein
PNAS 2005 102: 2283-2287; published online before print February 7 2005, 10.1073/pnas.0409270102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Tina M. Hunter, Iain W. McNae, Xiangyang Liang, Juraj Bella, Simon Parsons, Malcolm D. Walkinshaw, and Peter J. Sadler
Protein recognition of macrocycles: Binding of anti-HIV metallocyclams to lysozyme
PNAS 2005 102: 2288-2292; published online before print February 8 2005, 10.1073/pnas.0407595102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Michael Samoilov, Sergey Plyasunov, and Adam P. Arkin
Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations
PNAS 2005 102: 2310-2315; published online before print February 8 2005, 10.1073/pnas.0406841102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Computer Sciences

Stefan Washietl, Ivo L. Hofacker, and Peter F. Stadler
From The Cover: Fast and reliable prediction of noncoding RNAs
PNAS 2005 102: 2454-2459; published online before print January 21 2005, 10.1073/pnas.0409169102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figure]  
See Commentary on page 2269

Engineering

Fan-Gang Zeng, Kaibao Nie, Ginger S. Stickney, Ying-Yee Kong, Michael Vongphoe, Ashish Bhargave, Chaogang Wei, and Keli Cao
Speech recognition with amplitude and frequency modulations
PNAS 2005 102: 2293-2298; published online before print January 27 2005, 10.1073/pnas.0406460102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information] OPEN ACCESS ARTICLE  

Physics

Chaoming Song, Ping Wang, and Hernán A. Makse
Experimental measurement of an effective temperature for jammed granular materials
PNAS 2005 102: 2299-2304; published online before print February 8 2005, 10.1073/pnas.0409911102 [Abstract] [Full Text] [Figures Only] [PDF]  

SOCIAL SCIENCES

Anthropology

Wendy Sandler, Irit Meir, Carol Padden, and Mark Aronoff
From The Cover: The emergence of grammar: Systematic structure in a new language
PNAS 2005 102: 2661-2665; published online before print February 7 2005, 10.1073/pnas.0405448102 [Abstract] [Full Text] [Figures Only] [PDF] OPEN ACCESS ARTICLE  
See Commentary on page 2271

Social Sciences

Hannelore Brandt and Karl Sigmund
Indirect reciprocity, image scoring, and moral hazard
PNAS 2005 102: 2666-2670; published online before print February 4 2005, 10.1073/pnas.0407370102 [Abstract] [Full Text] [Figures Only] [PDF]  

BIOLOGICAL SCIENCES

Biochemistry

Ramon K. Tabtiang, Brent O. Cezairliyan, Robert A. Grant, Jesse C. Cochrane, and Robert T. Sauer
Consolidating critical binding determinants by noncyclic rearrangement of protein secondary structure
PNAS 2005 102: 2305-2309; published online before print February 2 2005, 10.1073/pnas.0409562102 [Abstract] [Full Text] [Figures Only] [PDF]  

Michael Samoilov, Sergey Plyasunov, and Adam P. Arkin
Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations
PNAS 2005 102: 2310-2315; published online before print February 8 2005, 10.1073/pnas.0406841102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Thomas R. Sundermeier, Daniel P. Dulebohn, Hye Jin Cho, and A. Wali Karzai
A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation
PNAS 2005 102: 2316-2321; published online before print February 7 2005, 10.1073/pnas.0409694102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Hammou Oubrahim, Jun Wang, Earl R. Stadtman, and P. Boon Chock
Molecular cloning and characterization of murine caspase-12 gene promoter
PNAS 2005 102: 2322-2327; published online before print February 8 2005, 10.1073/pnas.0409874102 [Abstract] [Full Text] [Figures Only] [PDF] OPEN ACCESS ARTICLE  

Sandra E. Nicholson, Donald Metcalf, Naomi S. Sprigg, Ruth Columbus, Francesca Walker, Anabel Silva, Dale Cary, Tracy A. Willson, Jian-Guo Zhang, Douglas J. Hilton, Warren S. Alexander, and Nicos A. Nicola
Suppressor of cytokine signaling (SOCS)-5 is a potential negative regulator of epidermal growth factor signaling
PNAS 2005 102: 2328-2333; published online before print February 3 2005, 10.1073/pnas.0409675102 [Abstract] [Full Text] [Figures Only] [PDF]  

Gali Prag, Sangho Lee, Rafael Mattera, Cecilia N. Arighi, Bridgette M. Beach, Juan S. Bonifacino, and James H. Hurley
Structural mechanism for ubiquitinated-cargo recognition by the Golgi-localized, {gamma}-ear-containing, ADP-ribosylation-factor-binding proteins
PNAS 2005 102: 2334-2339; published online before print February 8 2005, 10.1073/pnas.0500118102 [Abstract] [Full Text] [Figures Only] [PDF]  

Francisco J. Schopfer, Yiming Lin, Paul R. S. Baker, Taixing Cui, Minerva Garcia-Barrio, Jifeng Zhang, Kai Chen, Yuqing E. Chen, and Bruce A. Freeman
Nitrolinoleic acid: An endogenous peroxisome proliferator-activated receptor {gamma} ligand
PNAS 2005 102: 2340-2345; published online before print February 8 2005, 10.1073/pnas.0408384102 [Abstract] [Full Text] [Figures Only] [PDF]  

Aseem Z. Ansari, Anuja Ogirala, and Mark Ptashne
Transcriptional activating regions target attached substrates to a cyclin-dependent kinase
PNAS 2005 102: 2346-2349; published online before print February 1 2005, 10.1073/pnas.0409671102 [Abstract] [Full Text] [Figures Only] [PDF]  

Jeonghee Cho and Philip N. Tsichlis
Phosphorylation at Thr-290 regulates Tpl2 binding to NF-{kappa}B1/p105 and Tpl2 activation and degradation by lipopolysaccharide
PNAS 2005 102: 2350-2355; published online before print February 7 2005, 10.1073/pnas.0409856102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Meihong Chen, Lishu Zhang, Hong-Yan Zhang, Xiahui Xiong, Bo Wang, Quan Du, Bing Lu, Claes Wahlestedt, and Zicai Liang
A universal plasmid library encoding all permutations of small interfering RNA
PNAS 2005 102: 2356-2361; published online before print February 4 2005, 10.1073/pnas.0401549101 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Biophysics

Adam Liwo, Mey Khalili, and Harold A. Scheraga
Ab initio simulations of protein-folding pathways by molecular dynamics with the united-residue model of polypeptide chains
PNAS 2005 102: 2362-2367; published online before print January 26 2005, 10.1073/pnas.0408885102 [Abstract] [Full Text] [Figures Only] [PDF]  
See Commentary on page 2265

Ophir Flomenbom, Kelly Velonia, Davey Loos, Sadahiro Masuo, Mircea Cotlet, Yves Engelborghs, Johan Hofkens, Alan E. Rowan, Roeland J. M. Nolte, Mark Van der Auweraer, Frans C. de Schryver, and Joseph Klafter
Stretched exponential decay and correlations in the catalytic activity of fluctuating single lipase molecules
PNAS 2005 102: 2368-2372; published online before print February 4 2005, 10.1073/pnas.0409039102 [Abstract] [Full Text] [Figures Only] [PDF]  

Yaakov Levy, Samuel S. Cho, Tongye Shen, José N. Onuchic, and Peter G. Wolynes
Symmetry and frustration in protein energy landscapes: A near degeneracy resolves the Rop dimer-folding mystery
PNAS 2005 102: 2373-2378; published online before print February 8 2005, 10.1073/pnas.0409572102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figures]  

Jens Bredenbeck, Jan Helbing, Janet R. Kumita, G. Andrew Woolley, and Peter Hamm
{alpha}-Helix formation in a photoswitchable peptide tracked from picoseconds to microseconds by time-resolved IR spectroscopy
PNAS 2005 102: 2379-2384; published online before print February 7 2005, 10.1073/pnas.0406948102 [Abstract] [Full Text] [Figures Only] [PDF]  

Krishnananda Chattopadhyay, Elliot L. Elson, and Carl Frieden
The kinetics of conformational fluctuations in an unfolded protein measured by fluorescence methods
PNAS 2005 102: 2385-2389; published online before print February 8 2005, 10.1073/pnas.0500127102 [Abstract] [Full Text] [Figures Only] [PDF]  

Olivia du Roure, Alexandre Saez, Axel Buguin, Robert H. Austin, Philippe Chavrier, Pascal Silberzan, and Benoit Ladoux
Force mapping in epithelial cell migration
PNAS 2005 102: 2390-2395; published online before print February 4 2005, 10.1073/pnas.0408482102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Cell Biology

Ralf Kittler, Laurence Pelletier, Chunling Ma, Ina Poser, Steffi Fischer, Anthony A. Hyman, and Frank Buchholz
RNA interference rescue by bacterial artificial chromosome transgenesis in mammalian tissue culture cells
PNAS 2005 102: 2396-2401; published online before print February 3 2005, 10.1073/pnas.0409861102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figures]  

M. Estela Campanella, Haiyan Chu, and Philip S. Low
Assembly and regulation of a glycolytic enzyme complex on the human erythrocyte membrane
PNAS 2005 102: 2402-2407; published online before print February 8 2005, 10.1073/pnas.0409741102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

James R. Stringer, Jon S. Larson, Jared M. Fischer, Mario Medvedovic, Megan N. Hersh, Gregory P. Boivin, and Saundra L. Stringer
Modeling variation in tumors in vivo
PNAS 2005 102: 2408-2413; published online before print February 3 2005, 10.1073/pnas.0401340102 [Abstract] [Full Text] [Figures Only] [PDF]  

Developmental Biology

Yasuhiko Kawakami, Masanao Tsuda, Shigeru Takahashi, Noboru Taniguchi, Concepción Rodríguez Esteban, Michihisa Zemmyo, Takayuki Furumatsu, Martin Lotz, Juan Carlos Izpisúa Belmonte, and Hiroshi Asahara
Transcriptional coactivator PGC-1{alpha} regulates chondrogenesis via association with Sox9
PNAS 2005 102: 2414-2419; published online before print February 7 2005, 10.1073/pnas.0407510102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Haiyan Lei, Hailong Wang, Aster H. Juan, and Frank H. Ruddle
The identification of Hoxc8 target genes
PNAS 2005 102: 2420-2424; published online before print February 7 2005, 10.1073/pnas.0409700102 [Abstract] [Full Text] [Figures Only] [PDF]  

Ecology

Peter M. Narins, Daniela S. Grabul, Kiran K. Soma, Philippe Gaucher, and Walter Hödl
From The Cover: Cross-modal integration in a dart-poison frog
PNAS 2005 102: 2425-2429; published online before print January 26 2005, 10.1073/pnas.0406407102 [Abstract] [Full Text] [Figures Only] [PDF]  
See Commentary on page 2267

Evolution

Huai-Dong Song, Chang-Chun Tu, Guo-Wei Zhang, Sheng-Yue Wang, Kui Zheng, Lian-Cheng Lei, Qiu-Xia Chen, Yu-Wei Gao, Hui-Qiong Zhou, Hua Xiang, Hua-Jun Zheng, Shur-Wern Wang Chern, Feng Cheng, Chun-Ming Pan, Hua Xuan, Sai-Juan Chen, Hui-Ming Luo, Duan-Hua Zhou, Yu-Fei Liu, Jian-Feng He, Peng-Zhe Qin, Ling-Hui Li, Yu-Qi Ren, Wen-Jia Liang, Ye-Dong Yu, Larry Anderson, Ming Wang, Rui-Heng Xu, Xin-Wei Wu, Huan-Ying Zheng, Jin-Ding Chen, Guodong Liang, Yang Gao, Ming Liao, Ling Fang, Li-Yun Jiang, Hui Li, Fang Chen, Biao Di, Li-Juan He, Jin-Yan Lin, Suxiang Tong, Xiangang Kong, Lin Du, Pei Hao, Hua Tang, Andrea Bernini, Xiao-Jing Yu, Ottavia Spiga, Zong-Ming Guo, Hai-Yan Pan, Wei-Zhong He, Jean-Claude Manuguerra, Arnaud Fontanet, Antoine Danchin, Neri Niccolai, Yi-Xue Li, Chung-I Wu, and Guo-Ping Zhao
Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human
PNAS 2005 102: 2430-2435; published online before print February 4 2005, 10.1073/pnas.0409608102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Tables] OPEN ACCESS ARTICLE  

Yoichi Tanabe, Mitsuyasu Hasebe, Hiroyuki Sekimoto, Tomoaki Nishiyama, Masakazu Kitani, Katrin Henschel, Thomas Münster, Günter Theissen, Hisayoshi Nozaki, and Motomi Ito
Characterization of MADS-box genes in charophycean green algae and its implication for the evolution of MADS-box genes
PNAS 2005 102: 2436-2441; published online before print February 7 2005, 10.1073/pnas.0409860102 [Abstract] [Full Text] [Figures Only] [PDF]  

Peter L. Morrell, Donna M. Toleno, Karen E. Lundy, and Michael T. Clegg
Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization
PNAS 2005 102: 2442-2447; published online before print February 7 2005, 10.1073/pnas.0409804102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Genetics

Jiang F. Zhong, Yi Zhao, Susan Sutton, Andrew Su, Yuxia Zhan, Lunjian Zhu, Chunli Yan, Tim Gallaher, Patrick B. Johnston, W. French Anderson, and Michael P. Cooke
Gene expression profile of murine long-term reconstituting vs. short-term reconstituting hematopoietic stem cells
PNAS 2005 102: 2448-2453; published online before print February 4 2005, 10.1073/pnas.0409459102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information] OPEN ACCESS ARTICLE  

Stefan Washietl, Ivo L. Hofacker, and Peter F. Stadler
From The Cover: Fast and reliable prediction of noncoding RNAs
PNAS 2005 102: 2454-2459; published online before print January 21 2005, 10.1073/pnas.0409169102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figure]  
See Commentary on page 2269

Jonathan D. Werner, Justin O. Borevitz, Norman Warthmann, Gabriel T. Trainer, Joseph R. Ecker, Joanne Chory, and Detlef Weigel
Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation
PNAS 2005 102: 2460-2465; published online before print February 4 2005, 10.1073/pnas.0409474102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figure]  

Immunology

Ali A. Zarrin, Ming Tian, Jing Wang, Tiffany Borjeson, and Frederick W. Alt
Influence of switch region length on immunoglobulin class switch recombination
PNAS 2005 102: 2466-2470; published online before print January 31 2005, 10.1073/pnas.0409847102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figure]  

Sean Rooney, Frederick W. Alt, JoAnn Sekiguchi, and John P. Manis
Artemis-independent functions of DNA-dependent protein kinase in Ig heavy chain class switch recombination and development
PNAS 2005 102: 2471-2475; published online before print February 7 2005, 10.1073/pnas.0409857102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figure]  

Yibing Wang, Anatoyla Rubtsov, Ryan Heiser, Janice White, Frances Crawford, Philippa Marrack, and John W. Kappler
Using a baculovirus display library to identify MHC class I mimotopes
PNAS 2005 102: 2476-2481; published online before print February 7 2005, 10.1073/pnas.0409798102 [Abstract] [Full Text] [Figures Only] [PDF] OPEN ACCESS ARTICLE  

Keiichiro Suzuki, Bob Meek, Yasuko Doi, Tasuku Honjo, and Sidonia Fagarasan
Two distinctive pathways for recruitment of naïve and primed IgM+ B cells to the gut lamina propria
PNAS 2005 102: 2482-2486; published online before print February 3 2005, 10.1073/pnas.0409539102 [Abstract] [Full Text] [Figures Only] [PDF]  

Thomas R. Hawn, Annelies Verbon, Marta Janer, Lue Ping Zhao, Bruce Beutler, and Alan Aderem
Toll-like receptor 4 polymorphisms are associated with resistance to Legionnaires' disease
PNAS 2005 102: 2487-2489; published online before print February 7 2005, 10.1073/pnas.0409831102 [Abstract] [Full Text] [PDF]  

Medical Sciences

Tiffany Brake and Paul F. Lambert
Estrogen contributes to the onset, persistence, and malignant progression of cervical cancer in a human papillomavirus-transgenic mouse model
PNAS 2005 102: 2490-2495; published online before print February 7 2005, 10.1073/pnas.0409883102 [Abstract] [Full Text] [Figures Only] [PDF]  

Lynn E. Macdonald, Katherine E. Wortley, Lori C. Gowen, Keith D. Anderson, Jane D. Murray, William T. Poueymirou, Mary V. Simmons, Dianna Barber, David M. Valenzuela, Aris N. Economides, Stanley J. Wiegand, George D. Yancopoulos, Mark W. Sleeman, and Andrew J. Murphy
Resistance to diet-induced obesity in mice globally overexpressing OGH/GPB5
PNAS 2005 102: 2496-2501; published online before print February 7 2005, 10.1073/pnas.0409849102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information] OPEN ACCESS ARTICLE  

Zongyu Zheng, Kai M. Schmidt-Ott, Streamson Chua, Kirk A. Foster, Rachelle Z. Frankel, Paul Pavlidis, Jonathan Barasch, Vivette D. D'Agati, and Ali G. Gharavi
A Mendelian locus on chromosome 16 determines susceptibility to doxorubicin nephropathy in the mouse
PNAS 2005 102: 2502-2507; published online before print February 7 2005, 10.1073/pnas.0409786102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Xue-Song Wu, Li Xin, Wen-Xuan Yin, Xi-Ying Shang, Lu Lu, Rory M. Watt, Kathryn S. E. Cheah, Jian-Dong Huang, De-Pei Liu, and Chih-Chuan Liang
Increased efficiency of oligonucleotide-mediated gene repair through slowing replication fork progression
PNAS 2005 102: 2508-2513; published online before print February 4 2005, 10.1073/pnas.0406991102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Eleonora Palma, Gabriele Spinelli, Gregorio Torchia, A. Martinez-Torres, Davide Ragozzino, Ricardo Miledi, and Fabrizio Eusebi
Abnormal GABAA receptors from the human epileptic hippocampal subiculum microtransplanted to Xenopus oocytes
PNAS 2005 102: 2514-2518; published online before print February 3 2005, 10.1073/pnas.0409687102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Kathryn R. Wagner, Xiaosong Liu, Xiaoli Chang, and Ronald E. Allen
Muscle regeneration in the prolonged absence of myostatin
PNAS 2005 102: 2519-2524; published online before print February 7 2005, 10.1073/pnas.0408729102 [Abstract] [Full Text] [Figures Only] [PDF] OPEN ACCESS ARTICLE  

Siva Kumar Kolluri, Maripat Corr, Sharon Y. James, Michele Bernasconi, Desheng Lu, Wen Liu, Howard B. Cottam, Lorenzo M. Leoni, Dennis A. Carson, and Xiao-kun Zhang
The R-enantiomer of the nonsteroidal antiinflammatory drug etodolac binds retinoid X receptor and induces tumor-selective apoptosis
PNAS 2005 102: 2525-2530; published online before print February 7 2005, 10.1073/pnas.0409721102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information] OPEN ACCESS ARTICLE  

John R. Pawloski, Douglas T. Hess, and Jonathan S. Stamler
Impaired vasodilation by red blood cells in sickle cell disease
PNAS 2005 102: 2531-2536; published online before print February 7 2005, 10.1073/pnas.0409876102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Jason M. Montez, Alex Soukas, Esra Asilmaz, Gulnorakhon Fayzikhodjaeva, Giamila Fantuzzi, and Jeffrey M. Friedman
Acute leptin deficiency, leptin resistance, and the physiologic response to leptin withdrawal
PNAS 2005 102: 2537-2542; published online before print February 7 2005, 10.1073/pnas.0409530102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Christopher C. Chadwick, Susan Chippari, Edward Matelan, Lisa Borges-Marcucci, Amy M. Eckert, James C. Keith, Jr., Leo M. Albert, Yelena Leathurby, Heather A. Harris, Ramesh A. Bhat, Mark Ashwell, Eugene Trybulski, Richard C. Winneker, Steven J. Adelman, Robert J. Steffan, and Douglas C. Harnish
Identification of pathway-selective estrogen receptor ligands that inhibit NF-{kappa}B transcriptional activity
PNAS 2005 102: 2543-2548; published online before print February 7 2005, 10.1073/pnas.0405841102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Microbiology

Jeff H. Chang, Jonathan M. Urbach, Terry F. Law, Larry W. Arnold, An Hu, Saurabh Gombar, Sarah R. Grant, Frederick M. Ausubel, and Jeffery L. Dangl
A high-throughput, near-saturating screen for type III effector genes from Pseudomonas syringae
PNAS 2005 102: 2549-2554; published online before print February 8 2005, 10.1073/pnas.0409660102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  
See Commentary on page 3527

John R. Spear, Jeffrey J. Walker, Thomas M. McCollom, and Norman R. Pace
From The Cover: Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem
PNAS 2005 102: 2555-2560; published online before print January 25 2005, 10.1073/pnas.0409574102 [Abstract] [Full Text] [Figures Only] [PDF]  
See Commentary on page 3889

Sharookh B. Kapadia and Francis V. Chisari
Hepatitis C virus RNA replication is regulated by host geranylgeranylation and fatty acids
PNAS 2005 102: 2561-2566; published online before print February 7 2005, 10.1073/pnas.0409834102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Figure]  

Konstantinos T. Konstantinidis and James M. Tiedje
Genomic insights that advance the species definition for prokaryotes
PNAS 2005 102: 2567-2572; published online before print February 8 2005, 10.1073/pnas.0409727102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Yiorgos Apidianakis, Michael N. Mindrinos, Wenzhong Xiao, Gee W. Lau, Regina L. Baldini, Ronald W. Davis, and Laurence G. Rahme
Profiling early infection responses: Pseudomonas aeruginosa eludes host defenses by suppressing antimicrobial peptide gene expression
PNAS 2005 102: 2573-2578; published online before print February 4 2005, 10.1073/pnas.0409588102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Theo Heller, Satoru Saito, Jonathan Auerbach, Tarice Williams, Tzivia Rachel Moreen, Allison Jazwinski, Brian Cruz, Neha Jeurkar, Ronda Sapp, Guangxiang Luo, and T. Jake Liang
An in vitro model of hepatitis C virion production
PNAS 2005 102: 2579-2583; published online before print February 8 2005, 10.1073/pnas.0409666102 [Abstract] [Full Text] [Figures Only] [PDF]  

Shizuo G. Kamita, Koukichi Nagasaka, Josie W. Chua, Toru Shimada, Kazuei Mita, Masahiko Kobayashi, Susumu Maeda, and Bruce D. Hammock
A baculovirus-encoded protein tyrosine phosphatase gene induces enhanced locomotory activity in a lepidopteran host
PNAS 2005 102: 2584-2589; published online before print February 7 2005, 10.1073/pnas.0409457102 [Abstract] [Full Text] [Figures Only] [PDF]  

Neuroscience

Fan-Gang Zeng, Kaibao Nie, Ginger S. Stickney, Ying-Yee Kong, Michael Vongphoe, Ashish Bhargave, Chaogang Wei, and Keli Cao
Speech recognition with amplitude and frequency modulations
PNAS 2005 102: 2293-2298; published online before print January 27 2005, 10.1073/pnas.0406460102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information] OPEN ACCESS ARTICLE  

Yu-Qing Cao and Richard W. Tsien
Effects of familial hemiplegic migraine type 1 mutations on neuronal P/Q-type Ca2+ channel activity and inhibitory synaptic transmission
PNAS 2005 102: 2590-2595; published online before print February 7 2005, 10.1073/pnas.0409896102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information] OPEN ACCESS ARTICLE  

Nam Le, Rakesh Nagarajan, James Y. T. Wang, Toshiyuki Araki, Robert E. Schmidt, and Jeffrey Milbrandt
Analysis of congenital hypomyelinating Egr2Lo/Lo nerves identifies Sox2 as an inhibitor of Schwann cell differentiation and myelination
PNAS 2005 102: 2596-2601; published online before print February 3 2005, 10.1073/pnas.0407836102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Tie-Shan Tang, Elizabeth Slow, Vitalie Lupu, Irina G. Stavrovskaya, Mutsuyuki Sugimori, Rodolfo Llinás, Bruce S. Kristal, Michael R. Hayden, and Ilya Bezprozvanny
Disturbed Ca2+ signaling and apoptosis of medium spiny neurons in Huntington's disease
PNAS 2005 102: 2602-2607; published online before print February 3 2005, 10.1073/pnas.0409402102 [Abstract] [Full Text] [Figures Only] [PDF]  

Seung-Hee Yoo, Caroline H. Ko, Phillip L. Lowrey, Ethan D. Buhr, Eun-joo Song, Suhwan Chang, Ook Joon Yoo, Shin Yamazaki, Choogon Lee, and Joseph S. Takahashi
A noncanonical E-box enhancer drives mouse Period2 circadian oscillations in vivo
PNAS 2005 102: 2608-2613; published online before print February 7 2005, 10.1073/pnas.0409763102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information] OPEN ACCESS ARTICLE  

Samuel M. Young, Jr.
Proteolysis of SNARE proteins alters facilitation and depression in a specific way
PNAS 2005 102: 2614-2619; published online before print February 3 2005, 10.1073/pnas.0409656102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Alon M. Chen, Marilyn H. Perrin, Michael R. DiGruccio, Joan M. Vaughan, Bhawanjit K. Brar, Carlos M. Arias, Kathy A. Lewis, Jean E. Rivier, Paul E. Sawchenko, and Wylie W. Vale
A soluble mouse brain splice variant of type 2{alpha} corticotropin-releasing factor (CRF) receptor binds ligands and modulates their activity
PNAS 2005 102: 2620-2625; published online before print February 8 2005, 10.1073/pnas.0409583102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Text]  

Florin Dolcos, Kevin S. LaBar, and Roberto Cabeza
Remembering one year later: Role of the amygdala and the medial temporal lobe memory system in retrieving emotional memories
PNAS 2005 102: 2626-2631; published online before print February 9 2005, 10.1073/pnas.0409848102 [Abstract] [Full Text] [Figures Only] [PDF]  

Pharmacology

Hermes J. Garbán, Diana C. Márquez-Garbán, Richard J. Pietras, and Louis J. Ignarro
Rapid nitric oxide-mediated S-nitrosylation of estrogen receptor: Regulation of estrogen-dependent gene transcription
PNAS 2005 102: 2632-2636; published online before print February 7 2005, 10.1073/pnas.0409854102 [Abstract] [Full Text] [Figures Only] [PDF]  

Physiology

Anthony Falluel-Morel, David Vaudry, Nicolas Aubert, Ludovic Galas, Magalie Benard, Magali Basille, Marc Fontaine, Alain Fournier, Hubert Vaudry, and Bruno J. Gonzalez
Pituitary adenylate cyclase-activating polypeptide prevents the effects of ceramides on migration, neurite outgrowth, and cytoskeleton remodeling
PNAS 2005 102: 2637-2642; published online before print February 4 2005, 10.1073/pnas.0409681102 [Abstract] [Full Text] [Figures Only] [PDF]  

Svetlana V. Komarova, Alexey Pereverzev, Jonathan W. Shum, Stephen M. Sims, and S. Jeffrey Dixon
Convergent signaling by acidosis and receptor activator of NF-{kappa}B ligand (RANKL) on the calcium/calcineurin/NFAT pathway in osteoclasts
PNAS 2005 102: 2643-2648; published online before print February 4 2005, 10.1073/pnas.0406874102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

Plant Biology

Ivan R. Baxter, Jeffery C. Young, Gordon Armstrong, Nathan Foster, Naomi Bogenschutz, Tatiana Cordova, Wendy Ann Peer, Samuel P. Hazen, Angus S. Murphy, and Jeffrey F. Harper
A plasma membrane H+-ATPase is required for the formation of proanthocyanidins in the seed coat endothelium of Arabidopsis thaliana
PNAS 2005 102: 2649-2654; published online before print February 4 2005, 10.1073/pnas.0406377102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

René Mathis, Frédérique Van Gijsegem, Riet De Rycke, Wim D'Haeze, Els Van Maelsaeke, Erin Anthonio, Marc Van Montagu, Marcelle Holsters, and Danny Vereecke
Lipopolysaccharides as a communication signal for progression of legume endosymbiosis
PNAS 2005 102: 2655-2660; published online before print February 7 2005, 10.1073/pnas.0409816102 [Abstract] [Full Text] [Figures Only] [PDF] [Supporting Information]  

CORRECTIONS

Correction for Syková et al., Changes in extracellular space size and geometry in APP23 transgenic mice: A model of Alzheimer's disease, PNAS 2005 102:479-484 [Extract] [Full Text] [PDF]  

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