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Proceedings of the National Academy of Sciences of the United States of America
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Table of Contents
December 18, 2001; 98 (26)
Index By Author
Cover Photo
FROM THE COVER
DNA condensates in vitreous ice: The fine structure
Actin reorganization by a tyrosine kinase
Feedback regulation of iron-sulfur cluster biosynthesis
Neuronal degeneration and chronic oxidative stress
Evolution and maintenance of virulence factors
Commentaries
Commentary
:
Paul A. Janmey
Creating a niche in the cytoskeleton: Actin reorganization by a protein kinase
PNAS
2001
98
:
14745
-
14747
;
doi:10.1073/pnas.011601598
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14865
in issue 26 of volume 98
Commentary
:
Rakesh K. Jain
and
Neil S. Forbes
Can engineered bacteria help control cancer?
PNAS
2001
98
:
14748
-
14750
;
doi:10.1073/pnas.261606598
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See companion article on page
15155
in issue 26 of volume 98
Commentary
:
Jeverson Frazzon
and
Dennis R. Dean
Feedback regulation of iron-sulfur cluster biosynthesis
PNAS
2001
98
:
14751
-
14753
;
doi:10.1073/pnas.011579098
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See companion article on page
14895
in issue 26 of volume 98
Commentary
:
John M. Scott
Genetic diversity and disease: Opportunities and challenge
PNAS
2001
98
:
14754
-
14756
;
doi:10.1073/pnas.011601398
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14853
in issue 26 of volume 98
Commentary
:
Avijit Chakrabartty
Progress in transthyretin fibrillogenesis research strengthens the amyloid hypothesis
PNAS
2001
98
:
14757
-
14759
;
doi:10.1073/pnas.261596398
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See companion article on page
14943
in issue 26 of volume 98
Commentary
:
Stuart M. Levitz
Does amoeboid reasoning explain the evolution and maintenance of virulence factors in Cryptococcus neoformans ?
PNAS
2001
98
:
14760
-
14762
;
doi:10.1073/pnas.261612398
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15245
in issue 26 of volume 98
Commentary
:
Kay Huebner
Tumor suppressors on 3p: A neoclassic quartet
PNAS
2001
98
:
14763
-
14765
;
doi:10.1073/pnas.261586598
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15062
in issue 26 of volume 98
Commentary
:
Judith P. Klinman
How many ways to craft a cofactor?
PNAS
2001
98
:
14766
-
14768
;
doi:10.1073/pnas.011602498
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14268
in issue 25 of volume 98
Physical Sciences
Chemistry
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Physical Sciences - Chemistry
:
Robert M. Jones
,
Liangde Lu
,
Roger Helgeson
,
Troy S. Bergstedt
,
Duncan W. McBranch
,
and
David G. Whitten
Building highly sensitive dye assemblies for biosensing from molecular building blocks
PNAS
2001
98
:
14769
-
14772
;
published ahead of print
December 11, 2001
,
doi:10.1073/pnas.251555298
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Physical Sciences - Chemistry - Biological Sciences - Genetics
:
Antonio Bedalov
,
Tonibelle Gatbonton
,
William P. Irvine
,
Daniel E. Gottschling
,
and
Julian A. Simon
Identification of a small molecule inhibitor of Sir2p
PNAS
2001
98
:
15113
-
15118
;
doi:10.1073/pnas.261574398
Abstract
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Engineering
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Physical Sciences - Engineering
:
Eliot Fried
and
Russell E. Todres
Prediction of disclinations in nematic elastomers
PNAS
2001
98
:
14773
-
14777
;
doi:10.1073/pnas.261395098
Abstract
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Geophysics
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Physical Sciences - Geophysics
:
James E. Hansen
and
Makiko Sato
Trends of measured climate forcing agents
PNAS
2001
98
:
14778
-
14783
;
doi:10.1073/pnas.261553698
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Physical Sciences - Geophysics
:
R. B. Myneni
,
J. Dong
,
C. J. Tucker
,
R. K. Kaufmann
,
P. E. Kauppi
,
J. Liski
,
L. Zhou
,
V. Alexeyev
,
and
M. K. Hughes
A large carbon sink in the woody biomass of Northern forests
PNAS
2001
98
:
14784
-
14789
;
published ahead of print
December 11, 2001
,
doi:10.1073/pnas.261555198
Abstract
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Supporting Information
Social Sciences
Psychology
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Social Sciences - Psychology
:
Robert Kurzban
,
John Tooby
,
and
Leda Cosmides
Can race be erased? Coalitional computation and social categorization
PNAS
2001
98
:
15387
-
15392
;
published ahead of print
December 11, 2001
,
doi:10.1073/pnas.251541498
Abstract
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Biological Sciences
Biochemistry
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Biological Sciences - Biochemistry
:
Stefan J. Riedl
,
Pablo Fuentes-Prior
,
Martin Renatus
,
Norman Kairies
,
Stephan Krapp
,
Robert Huber
,
Guy S. Salvesen
,
and
Wolfram Bode
Structural basis for the activation of human procaspase-7
PNAS
2001
98
:
14790
-
14795
;
doi:10.1073/pnas.221580098
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Biological Sciences - Biochemistry
:
Bissan Al-Lazikani
,
Felix B. Sheinerman
,
and
Barry Honig
Combining multiple structure and sequence alignments to improve sequence detection and alignment: Application to the SH2 domains of Janus kinases
PNAS
2001
98
:
14796
-
14801
;
doi:10.1073/pnas.011577898
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Biological Sciences - Biochemistry
:
Z. Hong Zhou
,
Diane B. McCarthy
,
Catherine M. O'Connor
,
Lester J. Reed
,
and
James K. Stoops
The remarkable structural and functional organization of the eukaryotic pyruvate dehydrogenase complexes
PNAS
2001
98
:
14802
-
14807
;
doi:10.1073/pnas.011597698
Abstract
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Biological Sciences - Biochemistry
:
Shiou-Chuan Tsai
,
Larry J. W. Miercke
,
Jolanta Krucinski
,
Rajesh Gokhale
,
Julian C.-H. Chen
,
Paul G. Foster
,
David E. Cane
,
Chaitan Khosla
,
and
Robert M. Stroud
Crystal structure of the macrocycle-forming thioesterase domain of the erythromycin polyketide synthase: Versatility from a unique substrate channel
PNAS
2001
98
:
14808
-
14813
;
doi:10.1073/pnas.011399198
Abstract
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Biological Sciences - Biochemistry
:
David A. Chavous
,
F. Rob Jackson
,
and
Clare M. O'Connor
Extension of the Drosophila lifespan by overexpression of a protein repair methyltransferase
PNAS
2001
98
:
14814
-
14818
;
published ahead of print
December 11, 2001
,
doi:10.1073/pnas.251446498
Abstract
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Biological Sciences - Biochemistry
:
Phil Bradley
,
Lenore Cowen
,
Matthew Menke
,
Jonathan King
,
and
Bonnie Berger
betawrap : Successful prediction of parallel β-helices from primary sequence reveals an association with many microbial pathogens
PNAS
2001
98
:
14819
-
14824
;
doi:10.1073/pnas.251267298
Abstract
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Supporting Table
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Biological Sciences - Biochemistry
:
Amy E. Keating
,
Vladimir N. Malashkevich
,
Bruce Tidor
,
and
Peter S. Kim
Side-chain repacking calculations for predicting structures and stabilities of heterodimeric coiled coils
PNAS
2001
98
:
14825
-
14830
;
doi:10.1073/pnas.261563398
Abstract
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Supporting Information
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Biological Sciences - Biochemistry
:
Walter Dunn
,
Phong Trang
,
Umair Khan
,
Jiaming Zhu
,
and
Fenyong Liu
RNase P-mediated inhibition of cytomegalovirus protease expression and viral DNA encapsidation by oligonucleotide external guide sequences
PNAS
2001
98
:
14831
-
14836
;
published ahead of print
December 11, 2001
,
doi:10.1073/pnas.261560598
Abstract
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Biological Sciences - Biochemistry
:
Stefan Hecht
,
Wolfgang Eisenreich
,
Petra Adam
,
Sabine Amslinger
,
Klaus Kis
,
Adelbert Bacher
,
Duilio Arigoni
,
and
Felix Rohdich
Studies on the nonmevalonate pathway to terpenes: The role of the GcpE (IspG) protein
PNAS
2001
98
:
14837
-
14842
;
doi:10.1073/pnas.201399298
Abstract
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Biological Sciences - Biochemistry
:
Beata A. Wolucka
,
Geert Persiau
,
Jan Van Doorsselaere
,
Mark W. Davey
,
Hans Demol
,
Joël Vandekerckhove
,
Marc Van Montagu
,
Marc Zabeau
,
and
Wout Boerjan
Partial purification and identification of GDP-mannose 3",5"-epimerase of Arabidopsis thaliana , a key enzyme of the plant vitamin C pathway
PNAS
2001
98
:
14843
-
14848
;
doi:10.1073/pnas.011578198
Abstract
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Biological Sciences - Biochemistry
:
Heon Man Lim
,
Hee Jung Lee
,
Siddhartha Roy
,
and
Sankar Adhya
A “master” in base unpairing during isomerization of a promoter upon RNA polymerase binding
PNAS
2001
98
:
14849
-
14852
;
published ahead of print
December 4, 2001
,
doi:10.1073/pnas.261517398
Abstract
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Biological Sciences - Biochemistry
:
Kazuhiro Yamada
,
Zhoutao Chen
,
Rima Rozen
,
and
Rowena G. Matthews
Effects of common polymorphisms on the properties of recombinant human methylenetetrahydrofolate reductase
PNAS
2001
98
:
14853
-
14858
;
published ahead of print
December 11, 2001
,
doi:10.1073/pnas.261469998
Abstract
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Supporting Information
See commentary article on page
14754
in issue 26 of volume 98
Select this article
Biological Sciences - Biochemistry
:
Elena Zocchi
,
Armando Carpaneto
,
Carlo Cerrano
,
Giorgio Bavestrello
,
Marco Giovine
,
Santina Bruzzone
,
Lucrezia Guida
,
Luisa Franco
,
and
Cesare Usai
The temperature-signaling cascade in sponges involves a heat-gated cation channel, abscisic acid, and cyclic ADP-ribose
PNAS
2001
98
:
14859
-
14864
;
doi:10.1073/pnas.261448698
Abstract
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Biological Sciences - Biochemistry
:
Yinxiang Wang
,
Ann L. Miller
,
Mark S. Mooseker
,
and
Anthony J. Koleske
From the Cover: The Abl-related gene (Arg) nonreceptor tyrosine kinase uses two F-actin-binding domains to bundle F-actin
PNAS
2001
98
:
14865
-
14870
;
doi:10.1073/pnas.251249298
Abstract
Full Text
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Supporting Figures
See commentary article on page
14745
in issue 26 of volume 98
Select this article
Biological Sciences - Biochemistry
:
Mark J. Dayel
,
Elizabeth A. Holleran
,
and
R. Dyche Mullins
Arp2/3 complex requires hydrolyzable ATP for nucleation of new actin filaments
PNAS
2001
98
:
14871
-
14876
;
doi:10.1073/pnas.261419298
Abstract
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Biological Sciences - Biochemistry
:
Rob J. Center
,
Peter Schuck
,
Richard D. Leapman
,
Larry O. Arthur
,
Patricia L. Earl
,
Bernard Moss
,
and
Jacob Lebowitz
Oligomeric structure of virion-associated and soluble forms of the simian immunodeficiency virus envelope protein in the prefusion activated conformation
PNAS
2001
98
:
14877
-
14882
;
doi:10.1073/pnas.261573898
Abstract
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Biological Sciences - Biochemistry
:
Ye Liu
,
Vladimir Bondarenko
,
Alexander Ninfa
,
and
Vasily M. Studitsky
DNA supercoiling allows enhancer action over a large distance
PNAS
2001
98
:
14883
-
14888
;
published ahead of print
December 11, 2001
,
doi:10.1073/pnas.261477898
Abstract
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Biological Sciences - Biochemistry
:
Wei Chen
,
Liaoyuan A. Hu
,
Mikhail V. Semenov
,
Shinichi Yanagawa
,
Akira Kikuchi
,
Robert J. Lefkowitz
,
and
William E. Miller
β-Arrestin1 modulates lymphoid enhancer factor transcriptional activity through interaction with phosphorylated dishevelled proteins
PNAS
2001
98
:
14889
-
14894
;
published ahead of print
December 11, 2001
,
doi:10.1073/pnas.211572798
Abstract
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Biological Sciences - Biochemistry
:
Christopher J. Schwartz
,
Jennifer L. Giel
,
Thomas Patschkowski
,
Christopher Luther
,
Frank J. Ruzicka
,
Helmut Beinert
,
and
Patricia J. Kiley
From the Cover: IscR, an Fe-S cluster-containing transcription factor, represses expression of Escherichia coli genes encoding Fe-S cluster assembly proteins
PNAS
2001
98
:
14895
-
14900
;
published ahead of print
December 11, 2001
,
doi:10.1073/pnas.251550898
Abstract
Full Text
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See commentary article on page
14751
in issue 26 of volume 98
Select this article
Biological Sciences - Biochemistry
:
Huawei Chen
,
Claire C. Tseng
,
Brian K. Hubbard
,
and
Christopher T. Walsh
Glycopeptide antibiotic biosynthesis: Enzymatic assembly of the dedicated amino acid monomer ( S )-3,5-dihydroxyphenylglycine
PNAS
2001
98
:
14901
-
14906
;
doi:10.1073/pnas.221582098
Abstract
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Biophysics
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Biological Sciences - Biophysics - Biological Sciences - Developmental Biology
:
Roy Welch
and
Dale Kaiser
Cell behavior in traveling wave patterns of myxobacteria
PNAS
2001
98
:
14907
-
14912
;
doi:10.1073/pnas.261574598
Abstract
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Supporting Movies
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Biological Sciences - Biophysics
:
Oleg A. Igoshin
,
Alex Mogilner
,
Roy D. Welch
,
Dale Kaiser
,
and
George Oster
Pattern formation and traveling waves in myxobacteria: Theory and modeling
PNAS
2001
98
:
14913
-
14918
;
doi:10.1073/pnas.221579598
Abstract
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Biological Sciences - Biophysics
:
Michael R. King
and
Daniel A. Hammer
Multiparticle adhesive dynamics: Hydrodynamic recruitment of rolling leukocytes
PNAS
2001
98
:
14919
-
14924
;
doi:10.1073/pnas.261272498
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Biological Sciences - Biophysics
:
Nicholas V. Hud
and
Kenneth H. Downing
From the Cover: Cryoelectron microscopy of λ phage DNA condensates in vitreous ice: The fine structure of DNA toroids
PNAS
2001
98
:
14925
-
14930
;
published ahead of print
December 4, 2001
,
doi:10.1073/pnas.261560398
Abstract
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Biological Sciences - Biophysics
:
Ruhong Zhou
,
Bruce J. Berne
,
and
Robert Germain
The free energy landscape for β hairpin folding in explicit water
PNAS
2001
98
:
14931
-
14936
;
doi:10.1073/pnas.201543998
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Biological Sciences - Biophysics
:
Wei Wang
and
Peter A. Kollman
Computational study of protein specificity: The molecular basis of HIV-1 protease drug resistance
PNAS
2001
98
:
14937
-
14942
;
doi:10.1073/pnas.251265598
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Biological Sciences - Biophysics
:
Xin Jiang
,
Joel N. Buxbaum
,
and
Jeffery W. Kelly
The V122I cardiomyopathy variant of transthyretin increases the velocity of rate-limiting tetramer dissociation, resulting in accelerated amyloidosis
PNAS
2001
98
:
14943
-
14948
;
doi:10.1073/pnas.261419998
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14757
in issue 26 of volume 98
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Biological Sciences - Biophysics
:
Walter Steffen
,
David Smith
,
Robert Simmons
,
and
John Sleep
Mapping the actin filament with myosin
PNAS
2001
98
:
14949
-
14954
;
published ahead of print
December 4, 2001
,
doi:10.1073/pnas.261560698
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Cell Biology
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Biological Sciences - Cell Biology
:
Jiyan Ma
and
Susan Lindquist
Wild-type PrP and a mutant associated with prion disease are subject to retrograde transport and proteasome degradation
PNAS
2001
98
:
14955
-
14960
;
published ahead of print
December 11, 2001
,
doi:10.1073/pnas.011578098
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Biological Sciences - Cell Biology
:
Thomas S. Weiss
,
Chester E. Chamberlain
,
Tetsuro Takeda
,
Ping Lin
,
Klaus M. Hahn
,
and
Marilyn Gist Farquhar
Gαi3 binding to calnuc on Golgi membranes in living cells monitored by fluorescence resonance energy transfer of green fluorescent protein fusion proteins
PNAS
2001
98
:
14961
-
14966
;
doi:10.1073/pnas.261572098
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Biological Sciences - Cell Biology
:
Scott Malstrom
,
Esmerina Tili
,
Dietmar Kappes
,
Jeffrey D. Ceci
,
and
Philip N. Tsichlis
Tumor induction by an Lck-MyrAkt transgene is delayed by mechanisms controlling the size of the thymus
PNAS
2001
98
:
14967
-
14972
;
doi:10.1073/pnas.231467698
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Biological Sciences - Cell Biology
:
Dong Yan
,
Marion Wiesmann
,
Michael Rohan
,
Vivien Chan
,
Ann B. Jefferson
,
Lida Guo
,
Doreen Sakamoto
,
Roger H. Caothien
,
John H. Fuller
,
Christoph Reinhard
,
Pablo D. Garcia
,
Filippo M. Randazzo
,
Jaime Escobedo
,
Wendy J. Fantl
,
and
Lewis T. Williams
Elevated expression of axin2 and hnkd mRNA provides evidence that Wnt/β-catenin signaling is activated in human colon tumors
PNAS
2001
98
:
14973
-
14978
;
doi:10.1073/pnas.261574498
Ab