Table 2.

SMURF double-propeller predictions for the proteins containing Pfam’s YYY motif

MotifTotal< 0.0001< 0.001< 0.01≥0.01
all5068025913631
HisKA23759143296
GGDEF90936423
SpoIIE2201660

The columns indicate the SMURF p value for the best of the nine templates. In addition to statistics for all YYY sequences, we also report separately performance on several large classes for which there is a sequence motif signature after the YYY: the HisKA family of Histidine kinases, the GGDEF family, and the SPoIIE family.