Table of Contents

Biological Sciences

• Agricultural Sciences

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    Altered starch structure is associated with endosperm modification in Quality Protein Maize

    Bryan C. Gibbon, Xuelu Wang, and Brian A. Larkins

    PNAS December 23, 2003 100 (26) 15329-15334; https://doi.org/10.1073/pnas.2136854100

• Anthropology

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    Encephalization and allometric trajectories in the genus Homo: Evidence from the Neandertal and modern lineages

    Emiliano Bruner, Giorgio Manzi, and Juan Luis Arsuaga

    PNAS December 23, 2003 100 (26) 15335-15340; https://doi.org/10.1073/pnas.2536671100

• Applied Biological Sciences

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    Climatic suitability for malaria transmission in Africa, 1911–1995

    Jennifer Small, Scott J. Goetz, and Simon I. Hay

    PNAS December 23, 2003 100 (26) 15341-15345; https://doi.org/10.1073/pnas.2236969100
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    Cellular and nerve regeneration within a biosynthetic extracellular matrix for corneal transplantation

    Fengfu Li, David Carlsson, Chris Lohmann, Erik Suuronen, Sandy Vascotto, Karin Kobuch, Heather Sheardown, Rejean Munger, Masatsugu Nakamura, and May Griffith

    PNAS December 23, 2003 100 (26) 15346-15351; https://doi.org/10.1073/pnas.2536767100
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    Phylogenetic and biochemical evidence for sterol synthesis in the bacterium Gemmata obscuriglobus

    Ann Pearson, Meytal Budin, and Jochen J. Brocks

    PNAS December 23, 2003 100 (26) 15352-15357; https://doi.org/10.1073/pnas.2536559100
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    Ligand selectivity by seeking hydrophobicity in thyroid hormone receptor

    Sabine Borngraeber, Mary-Jane Budny, Grazia Chiellini, Suzana T. Cunha-Lima, Marie Togashi, Paul Webb, John D. Baxter, Thomas S. Scanlan, and Robert J. Fletterick

    PNAS December 23, 2003 100 (26) 15358-15363; https://doi.org/10.1073/pnas.2136689100
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    Protection of Cftr knockout mice from acute lung infection by a helper-dependent adenoviral vector expressing Cftr in airway epithelia

    David R. Koehler, Umadevi Sajjan, Yu-Hua Chow, Bernard Martin, Geraldine Kent, A. Keith Tanswell, Colin McKerlie, Janet F. Forstner, and Jim Hu

    PNAS December 23, 2003 100 (26) 15364-15369; https://doi.org/10.1073/pnas.2436478100
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    l-Lysine acts like a partial serotonin receptor 4 antagonist and inhibits serotonin-mediated intestinal pathologies and anxiety in rats

    Miro Smriga and Kunio Torii

    PNAS December 23, 2003 100 (26) 15370-15375; https://doi.org/10.1073/pnas.2436556100

• Biochemistry

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    Crystal structures that suggest late development of genetic code components for differentiating aromatic side chains

    Xiang-Lei Yang, Francella J. Otero, Robert J. Skene, Duncan E. McRee, Paul Schimmel, and Lluís Ribas de Pouplana

    PNAS December 23, 2003 100 (26) 15376-15380; https://doi.org/10.1073/pnas.2136794100
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    Genetic, biochemical, and morphological evidence for the involvement of N-glycosylation in biosynthesis of the cell wall β1,6-glucan of Saccharomyces cerevisiae

    Manasi Chavan, Tadashi Suzuki, Magdalena Rekowicz, and William Lennarz

    PNAS December 23, 2003 100 (26) 15381-15386; https://doi.org/10.1073/pnas.2536561100
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    MSH2 and ATR form a signaling module and regulate two branches of the damage response to DNA methylation

    Yi Wang and Jun Qin

    PNAS December 23, 2003 100 (26) 15387-15392; https://doi.org/10.1073/pnas.2536810100
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    An oxocarbenium-ion intermediate of a ribozyme reaction indicated by kinetic isotope effects

    Peter J. Unrau and David P. Bartel

    PNAS December 23, 2003 100 (26) 15393-15397; https://doi.org/10.1073/pnas.2433147100
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    Structure of Mth11/Mth Rpp29, an essential protein subunit of archaeal and eukaryotic RNase P

    William P. Boomershine, Craig A. McElroy, Hsin-Yue Tsai, Ross C. Wilson, Venkat Gopalan, and Mark P. Foster

    PNAS December 23, 2003 100 (26) 15398-15403; https://doi.org/10.1073/pnas.2535887100
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    Rapid protein fold determination using unassigned NMR data

    Jens Meiler and David Baker

    PNAS December 23, 2003 100 (26) 15404-15409; https://doi.org/10.1073/pnas.2434121100
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    Divergent tRNA-like element supports initiation, elongation, and termination of protein biosynthesis

    Eric Jan, Terri Goss Kinzy, and Peter Sarnow

    PNAS December 23, 2003 100 (26) 15410-15415; https://doi.org/10.1073/pnas.2535183100
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    A tenascin-C aptamer identified by tumor cell SELEX: Systematic evolution of ligands by exponential enrichment

    Dion A. Daniels, Hang Chen, Brian J. Hicke, Kristine M. Swiderek, and Larry Gold

    PNAS December 23, 2003 100 (26) 15416-15421; https://doi.org/10.1073/pnas.2136683100
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    Trans-editing of mischarged tRNAs

    Ivan Ahel, Dragana Korencic, Michael Ibba, and Dieter Söll

    PNAS December 23, 2003 100 (26) 15422-15427; https://doi.org/10.1073/pnas.2136934100
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    Genome evolution reveals biochemical networks and functional modules

    Christian von Mering, Evgeny M. Zdobnov, Sophia Tsoka, Francesca D. Ciccarelli, Jose B. Pereira-Leal, Christos A. Ouzounis, and Peer Bork

    PNAS December 23, 2003 100 (26) 15428-15433; https://doi.org/10.1073/pnas.2136809100
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    An efficient proteomics method to identify the cellular targets of protein kinase inhibitors

    Klaus Godl, Josef Wissing, Alexander Kurtenbach, Peter Habenberger, Stephanie Blencke, Heidrun Gutbrod, Kostadinos Salassidis, Matthias Stein-Gerlach, Andrea Missio, Matt Cotten, and Henrik Daub

    PNAS December 23, 2003 100 (26) 15434-15439; https://doi.org/10.1073/pnas.2535024100
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    Generating a synthetic genome by whole genome assembly: φX174 bacteriophage from synthetic oligonucleotides

    Hamilton O. Smith, Clyde A. Hutchison III, Cynthia Pfannkoch, and J. Craig Venter

    PNAS December 23, 2003 100 (26) 15440-15445; https://doi.org/10.1073/pnas.2237126100
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    Autoubiquitylation of the V(D)J recombinase protein RAG1

    Jessica M. Jones and Martin Gellert

    PNAS December 23, 2003 100 (26) 15446-15451; https://doi.org/10.1073/pnas.2637012100
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    A general strategy for target-promoted alkylation in biological systems

    Qibing Zhou and Steven E. Rokita

    PNAS December 23, 2003 100 (26) 15452-15457; https://doi.org/10.1073/pnas.2533112100
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    A role in vacuolar arginine transport for yeast Btn1p and for human CLN3, the protein defective in Batten disease

    Yoojin Kim, Denia Ramirez-Montealegre, and David A. Pearce

    PNAS December 23, 2003 100 (26) 15458-15462; https://doi.org/10.1073/pnas.2136651100
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    Myoglobin forms amyloid fibrils by association of unfolded polypeptide segments

    Marcus Fändrich, Vincent Forge, Katrin Buder, Marlis Kittler, Christopher M. Dobson, and Stephan Diekmann

    PNAS December 23, 2003 100 (26) 15463-15468; https://doi.org/10.1073/pnas.0303758100
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    Donation of catalytic residues to RNA polymerase active center by transcription factor Gre

    Ekaterina Sosunova, Vasily Sosunov, Maxim Kozlov, Vadim Nikiforov, Alex Goldfarb, and Arkady Mustaev

    PNAS December 23, 2003 100 (26) 15469-15474; https://doi.org/10.1073/pnas.2536698100

• Biophysics

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    Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations

    A. Xayaphoummine, T. Bucher, F. Thalmann, and H. Isambert

    PNAS December 23, 2003 100 (26) 15310-15315; https://doi.org/10.1073/pnas.2536430100
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    Conformations and dynamics of Ets-1 ETS domain–DNA complexes

    Swarnalatha Y. Reddy, Satoshi Obika, and Thomas C. Bruice

    PNAS December 23, 2003 100 (26) 15475-15480; https://doi.org/10.1073/pnas.1936251100
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    A macroscopic scale model of bacterial flagellar bundling

    MunJu Kim, James C. Bird, Annemarie J. Van Parys, Kenneth S. Breuer, and Thomas R. Powers

    PNAS December 23, 2003 100 (26) 15481-15485; https://doi.org/10.1073/pnas.2633596100
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    Ultrafast folding of α₃D: A de novo designed three-helix bundle protein

    Yongjin Zhu, Darwin O. V. Alonso, Kosuke Maki, Cheng-Yen Huang, Steven J. Lahr, Valerie Daggett, Heinrich Roder, William F. DeGrado, and Feng Gai

    PNAS December 23, 2003 100 (26) 15486-15491; https://doi.org/10.1073/pnas.2136623100
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    Probing protein oligomerization in living cells with fluorescence fluctuation spectroscopy

    Yan Chen, Li-Na Wei, and Joachim D. Müller

    PNAS December 23, 2003 100 (26) 15492-15497; https://doi.org/10.1073/pnas.2533045100
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    Electroosmotic enhancement of the binding of a neutral molecule to a transmembrane pore

    Li-Qun Gu, Stephen Cheley, and Hagan Bayley

    PNAS December 23, 2003 100 (26) 15498-15503; https://doi.org/10.1073/pnas.2531778100
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    Structural basis for PAS domain heterodimerization in the basic helix–loop–helix-PAS transcription factor hypoxia-inducible factor

    Paul J. A. Erbel, Paul B. Card, Ozgur Karakuzu, Richard K. Bruick, and Kevin H. Gardner

    PNAS December 23, 2003 100 (26) 15504-15509; https://doi.org/10.1073/pnas.2533374100
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    Channel gating forces govern accuracy of mechano-electrical transduction in hair cells

    Sietse M. van Netten, Theo Dinklo, Walter Marcotti, and Corné J. Kros

    PNAS December 23, 2003 100 (26) 15510-15515; https://doi.org/10.1073/pnas.2632626100
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    Single-molecule fluorescence resonance energy transfer reveals a dynamic equilibrium between closed and open conformations of syntaxin 1

    M. Margittai, J. Widengren, E. Schweinberger, G. F. Schröder, S. Felekyan, E. Haustein, M. König, D. Fasshauer, H. Grubmüller, R. Jahn, and C. A. M. Seidel

    PNAS December 23, 2003 100 (26) 15516-15521; https://doi.org/10.1073/pnas.2331232100
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    Network component analysis: Reconstruction of regulatory signals in biological systems

    James C. Liao, Riccardo Boscolo, Young-Lyeol Yang, Linh My Tran, Chiara Sabatti, and Vwani P. Roychowdhury

    PNAS December 23, 2003 100 (26) 15522-15527; https://doi.org/10.1073/pnas.2136632100
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    Domain movements of HAP2 in the cap–filament complex formation and growth process of the bacterial flagellum

    Saori Maki-Yonekura, Koji Yonekura, and Keiichi Namba

    PNAS December 23, 2003 100 (26) 15528-15533; https://doi.org/10.1073/pnas.2534343100
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    Direct observation of tiers in the energy landscape of a chromoprotein: A single-molecule study

    Clemens Hofmann, Thijs J. Aartsma, Hartmut Michel, and Jürgen Köhler

    PNAS December 23, 2003 100 (26) 15534-15538; https://doi.org/10.1073/pnas.2533896100
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    A discrete water exit pathway in the membrane protein cytochrome c oxidase

    Bryan Schmidt, John McCracken, and Shelagh Ferguson-Miller

    PNAS December 23, 2003 100 (26) 15539-15542; https://doi.org/10.1073/pnas.2633243100
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    Redox-coupled proton translocation in biological systems: Proton shuttling in cytochrome c oxidase

    Andreas Namslauer, Ashtamurthy S. Pawate, Robert B. Gennis, and Peter Brzezinski

    PNAS December 23, 2003 100 (26) 15543-15547; https://doi.org/10.1073/pnas.2432106100

• Cell Biology

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    TGF-β-induced RhoA and p160^ROCK activation is involved in the inhibition of Cdc25A with resultant cell-cycle arrest

    • From the Cover

    Neil A. Bhowmick, Mayshan Ghiassi, Mary Aakre, Kimberly Brown, Vikas Singh, and Harold L. Moses

    PNAS December 23, 2003 100 (26) 15548-15553; https://doi.org/10.1073/pnas.2536483100
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    Visualizing lipid structure and raft domains in living cells with two-photon microscopy

    Katharina Gaus, Enrico Gratton, Eleanor P. W. Kable, Allan S. Jones, Ingrid Gelissen, Leonard Kritharides, and Wendy Jessup

    PNAS December 23, 2003 100 (26) 15554-15559; https://doi.org/10.1073/pnas.2534386100
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    The tetraspanin CD63 enhances the internalization of the H,K-ATPase β-subunit

    Amy Duffield, Erik-Jan Kamsteeg, Andrea N. Brown, Philipp Pagel, and Michael J. Caplan

    PNAS December 23, 2003 100 (26) 15560-15565; https://doi.org/10.1073/pnas.2536699100
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    The kinesin KIF17b and RNA-binding protein TB-RBP transport specific cAMP-responsive element modulator-regulated mRNAs in male germ cells

    Vargheese Chennathukuzhi, Carlos R. Morales, Mohamed El-Alfy, and Norman B. Hecht

    PNAS December 23, 2003 100 (26) 15566-15571; https://doi.org/10.1073/pnas.2536695100
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    Epstein–Barr virus activates β-catenin in type III latently infected B lymphocyte lines: Association with deubiquitinating enzymes

    Julia Shackelford, Christopher Maier, and Joseph S. Pagano

    PNAS December 23, 2003 100 (26) 15572-15576; https://doi.org/10.1073/pnas.2636947100
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    Homeoprotein DLX-1 interacts with Smad4 and blocks a signaling pathway from activin A in hematopoietic cells

    Shigeru Chiba, Kenichi Takeshita, Yoichi Imai, Keiki Kumano, Mineo Kurokawa, Shigeo Masuda, Kiyoshi Shimizu, Shuji Nakamura, Frank H. Ruddle, and Hisamaru Hirai

    PNAS December 23, 2003 100 (26) 15577-15582; https://doi.org/10.1073/pnas.2536757100
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    Membrane tube formation from giant vesicles by dynamic association of motor proteins

    • From the Cover

    Gerbrand Koster, Martijn VanDuijn, Bas Hofs, and Marileen Dogterom

    PNAS December 23, 2003 100 (26) 15583-15588; https://doi.org/10.1073/pnas.2531786100
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    Intracellular localization of a group II chaperonin indicates a membrane-related function

    Jonathan D. Trent, Hiromi K. Kagawa, Chad D. Paavola, R. Andrew McMillan, Jeanie Howard, Linda Jahnke, Colleen Lavin, Tsegereda Embaye, and Christopher E. Henze

    PNAS December 23, 2003 100 (26) 15589-15594; https://doi.org/10.1073/pnas.2136795100
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    Epstein–Barr virus latent membrane protein 1 activation of NF-κB through IRAK1 and TRAF6

    Micah Luftig, Efthimios Prinarakis, Teruhito Yasui, Theodore Tsichritzis, Ellen Cahir-McFarland, Jun-Ichiro Inoue, Hiroyasu Nakano, Tak Wah Mak, Wen-Chen Yeh, Xiaoxia Li, Shizuo Akira, Nobutaka Suzuki, Shinobu Suzuki, George Mosialos, and Elliott Kieff

    PNAS December 23, 2003 100 (26) 15595-15600; https://doi.org/10.1073/pnas.2136756100
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    Mullerian Inhibiting Substance inhibits cervical cancer cell growth via a pathway involving p130 and p107

    Thanh U. Barbie, David A. Barbie, David T. MacLaughlin, Shyamala Maheswaran, and Patricia K. Donahoe

    PNAS December 23, 2003 100 (26) 15601-15606; https://doi.org/10.1073/pnas.2636900100

• Developmental Biology

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    Use of Sindbis virus-mediated RNA interference to demonstrate a conserved role of Broad-Complex in insect metamorphosis

    Mirka Uhlirova, Brian D. Foy, Barry J. Beaty, Ken E. Olson, Lynn M. Riddiford, and Marek Jindra

    PNAS December 23, 2003 100 (26) 15607-15612; https://doi.org/10.1073/pnas.2136837100
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    Glucose transporter-1-deficient mice exhibit impaired development and deformities that are similar to diabetic embryopathy

    Charles W. Heilig, Thomas Saunders, Frank C. Brosius III, Kelle Moley, Kathleen Heilig, Raymond Baggs, LiRong Guo, and David Conner

    PNAS December 23, 2003 100 (26) 15613-15618; https://doi.org/10.1073/pnas.2536196100
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    p57^Kip2 cooperates with Nurr1 in developing dopamine cells

    Bertrand Joseph, Åsa Wallén-Mackenzie, Gérard Benoit, Takashi Murata, Eliza Joodmardi, Sam Okret, and Thomas Perlmann

    PNAS December 23, 2003 100 (26) 15619-15624; https://doi.org/10.1073/pnas.2635658100
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    Marker succession during the development of keratinocytes from cultured human embryonic stem cells

    Howard Green, Karen Easley, and Shiro Iuchi

    PNAS December 23, 2003 100 (26) 15625-15630; https://doi.org/10.1073/pnas.0307226100
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    Murine and human zona pellucida 3 derived from mouse eggs express identical O-glycans

    Anne Dell, Sara Chalabi, Richard L. Easton, Stuart M. Haslam, Mark Sutton-Smith, Manish S. Patankar, Frank Lattanzio, Maria Panico, Howard R. Morris, and Gary F. Clark

    PNAS December 23, 2003 100 (26) 15631-15636; https://doi.org/10.1073/pnas.2635507100
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    Trophoblast expression of fms-like tyrosine kinase 1 is not required for the establishment of the maternal–fetal interface in the mouse placenta

    Masanori Hirashima, Yong Lu, Lois Byers, and Janet Rossant

    PNAS December 23, 2003 100 (26) 15637-15642; https://doi.org/10.1073/pnas.2635424100

• Ecology

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    Fungal farming in a snail

    Brian R. Silliman and Steven Y. Newell

    PNAS December 23, 2003 100 (26) 15643-15648; https://doi.org/10.1073/pnas.2535227100
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    Fungal endophytes limit pathogen damage in a tropical tree

    A. Elizabeth Arnold, Luis Carlos Mejía, Damond Kyllo, Enith I. Rojas, Zuleyka Maynard, Nancy Robbins, and Edward Allen Herre

    PNAS December 23, 2003 100 (26) 15649-15654; https://doi.org/10.1073/pnas.2533483100

• Evolution

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    Extensive gene gain associated with adaptive evolution of poxviruses

    Aoife McLysaght, Pierre F. Baldi, and Brandon S. Gaut

    PNAS December 23, 2003 100 (26) 15655-15660; https://doi.org/10.1073/pnas.2136653100
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    Organismal complexity, protein complexity, and gene duplicability

    Jing Yang, Richard Lusk, and Wen-Hsiung Li

    PNAS December 23, 2003 100 (26) 15661-15665; https://doi.org/10.1073/pnas.2536672100
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    Divergence of Hoxc8 early enhancer parallels diverged axial morphologies between mammals and fishes

    Sanjay Anand, Wayne C. H. Wang, Dennis R. Powell, Stacey A. Bolanowski, Jian Zhang, Christina Ledje, Aruna B. Pawashe, Chris T. Amemiya, and Cooduvalli S. Shashikant

    PNAS December 23, 2003 100 (26) 15666-15669; https://doi.org/10.1073/pnas.2535667100
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    Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes

    Scott Kroken, N. Louise Glass, John W. Taylor, O. C. Yoder, and B. Gillian Turgeon

    PNAS December 23, 2003 100 (26) 15670-15675; https://doi.org/10.1073/pnas.2532165100
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    Limited boundaries for extensive horizontal gene transfer among Salmonella pathogens

    Eric W. Brown, Mark K. Mammel, J. Eugene LeClerc, and Thomas A. Cebula

    PNAS December 23, 2003 100 (26) 15676-15681; https://doi.org/10.1073/pnas.2634406100
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    The early stages of duplicate gene evolution

    Richard C. Moore and Michael D. Purugganan

    PNAS December 23, 2003 100 (26) 15682-15687; https://doi.org/10.1073/pnas.2535513100
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    The compositional adjustment of amino acid substitution matrices

    Yi-Kuo Yu, John C. Wootton, and Stephen F. Altschul

    PNAS December 23, 2003 100 (26) 15688-15693; https://doi.org/10.1073/pnas.2533904100
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    Host defense reinforces host–parasite cospeciation

    Dale H. Clayton, Sarah E. Bush, Brad M. Goates, and Kevin P. Johnson

    PNAS December 23, 2003 100 (26) 15694-15699; https://doi.org/10.1073/pnas.2533751100
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    Changing identities: tRNA duplication and remolding within animal mitochondrial genomes

    Timothy A. Rawlings, Timothy M. Collins, and Rüdiger Bieler

    PNAS December 23, 2003 100 (26) 15700-15705; https://doi.org/10.1073/pnas.2535036100

• Genetics

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    Positional cloning and characterization of Mei1, a vertebrate-specific gene required for normal meiotic chromosome synapsis in mice

    • From the Cover

    Brian J. Libby, Laura G. Reinholdt, and John C. Schimenti

    PNAS December 23, 2003 100 (26) 15706-15711; https://doi.org/10.1073/pnas.2432067100
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    Adipose-specific peroxisome proliferator-activated receptor γ knockout causes insulin resistance in fat and liver but not in muscle

    Weimin He, Yaacov Barak, Andrea Hevener, Peter Olson, Debbie Liao, Jamie Le, Michael Nelson, Estelita Ong, Jerrold M. Olefsky, and Ronald M. Evans

    PNAS December 23, 2003 100 (26) 15712-15717; https://doi.org/10.1073/pnas.2536828100
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    Gene expression analysis of plant host–pathogen interactions by SuperSAGE

    Hideo Matsumura, Stefanie Reich, Akiko Ito, Hiromasa Saitoh, Sophien Kamoun, Peter Winter, Günter Kahl, Monika Reuter, Detlev H. Krüger, and Ryohei Terauchi

    PNAS December 23, 2003 100 (26) 15718-15723; https://doi.org/10.1073/pnas.2536670100
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    High-resolution yeast phenomics resolves different physiological features in the saline response

    Jonas Warringer, Elke Ericson, Luciano Fernandez, Olle Nerman, and Anders Blomberg

    PNAS December 23, 2003 100 (26) 15724-15729; https://doi.org/10.1073/pnas.2435976100
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    Plastid protein synthesis is required for plant development in tobacco

    Daniela Ahlert, Stephanie Ruf, and Ralph Bock

    PNAS December 23, 2003 100 (26) 15730-15735; https://doi.org/10.1073/pnas.2533668100
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    Activation of a LTR-retrotransposon by telomere erosion

    Derek T. Scholes, Alison E. Kenny, Eric R. Gamache, Zhongming Mou, and M. Joan Curcio

    PNAS December 23, 2003 100 (26) 15736-15741; https://doi.org/10.1073/pnas.2136609100
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    A bacterial group II intron favors retrotransposition into plasmid targets

    Kenji Ichiyanagi, Arthur Beauregard, and Marlene Belfort

    PNAS December 23, 2003 100 (26) 15742-15747; https://doi.org/10.1073/pnas.2536659100
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    Enhanced levels of λ Red-mediated recombinants in mismatch repair mutants

    Nina Costantino and Donald L. Court

    PNAS December 23, 2003 100 (26) 15748-15753; https://doi.org/10.1073/pnas.2434959100
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    Widespread purifying selection at polymorphic sites in human protein-coding loci

    Austin L. Hughes, Bernice Packer, Robert Welch, Andrew W. Bergen, Stephen J. Chanock, and Meredith Yeager

    PNAS December 23, 2003 100 (26) 15754-15757; https://doi.org/10.1073/pnas.2536718100
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    Direct and distinguishable inhibitory roles for SUMO isoforms in the control of transcriptional synergy

    Sam Holmstrom, Mary E. Van Antwerp, and Jorge A. Iñiguez-Lluhí

    PNAS December 23, 2003 100 (26) 15758-15763; https://doi.org/10.1073/pnas.2136933100
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    Systematic, genome-wide identification of host genes affecting replication of a positive-strand RNA virus

    David B. Kushner, Brett D. Lindenbach, Valery Z. Grdzelishvili, Amine O. Noueiry, Scott M. Paul, and Paul Ahlquist

    PNAS December 23, 2003 100 (26) 15764-15769; https://doi.org/10.1073/pnas.2536857100
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    Two different Swi5-containing protein complexes are involved in mating-type switching and recombination repair in fission yeast

    Yufuko Akamatsu, Dorota Dziadkowiec, Mitsunori Ikeguchi, Hideo Shinagawa, and Hiroshi Iwasaki

    PNAS December 23, 2003 100 (26) 15770-15775; https://doi.org/10.1073/pnas.2632890100
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    Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

    Toshiyuki Shiraki, Shinji Kondo, Shintaro Katayama, Kazunori Waki, Takeya Kasukawa, Hideya Kawaji, Rimantas Kodzius, Akira Watahiki, Mari Nakamura, Takahiro Arakawa, Shiro Fukuda, Daisuke Sasaki, Anna Podhajska, Matthias Harbers, Jun Kawai, Piero Carninci, and Yoshihide Hayashizaki

    PNAS December 23, 2003 100 (26) 15776-15781; https://doi.org/10.1073/pnas.2136655100
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    Endonuclease G is required for early embryogenesis and normal apoptosis in mice

    Jianhua Zhang, Mei Dong, Lily Li, Yunxia Fan, Purnima Pathre, Jin Dong, Danwen Lou, James M. Wells, Danyvid Olivares-Villagómez, Luc Van Kaer, Xiaodong Wang, and Ming Xu

    PNAS December 23, 2003 100 (26) 15782-15787; https://doi.org/10.1073/pnas.2636393100
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    Contribution of the H63D mutation in HFE to murine hereditary hemochromatosis

    Shunji Tomatsu, Koji O. Orii, Robert E. Fleming, Christopher C. Holden, Abdul Waheed, Robert S. Britton, Monica A. Gutierrez, Susana Velez-Castrillon, Bruce R. Bacon, and William S. Sly

    PNAS December 23, 2003 100 (26) 15788-15793; https://doi.org/10.1073/pnas.2237037100
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    The Drosophila homolog of Down's syndrome critical region 1 gene regulates learning: Implications for mental retardation

    Karen T. Chang, Yi-Jun Shi, and Kyung-Tai Min

    PNAS December 23, 2003 100 (26) 15794-15799; https://doi.org/10.1073/pnas.2536696100

• Immunology

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    IκBα/IκBε deficiency reveals that a critical NF-κB dosage is required for lymphocyte survival

    Bertrand Goudeau, François Huetz, Sandrine Samson, James P. Di Santo, Ana Cumano, Amer Beg, Alain Israël, and Sylvie Mémet

    PNAS December 23, 2003 100 (26) 15800-15805; https://doi.org/10.1073/pnas.2535880100
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    Diversity of regulatory CD4^+T cells controlling distinct organ-specific autoimmune diseases

    Marie-Alexandra Alyanakian, Sylvaine You, Diane Damotte, Christine Gouarin, Anne Esling, Corinne Garcia, Séverine Havouis, Lucienne Chatenoud, and Jean-François Bach

    PNAS December 23, 2003 100 (26) 15806-15811; https://doi.org/10.1073/pnas.2636971100
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    Electron tomography analysis of envelope glycoprotein trimers on HIV and simian immunodeficiency virus virions

    Ping Zhu, Elena Chertova, Julian Bess Jr., Jeffrey D. Lifson, Larry O. Arthur, Jun Liu, Kenneth A. Taylor, and Kenneth H. Roux

    PNAS December 23, 2003 100 (26) 15812-15817; https://doi.org/10.1073/pnas.2634931100
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    Antigen-driven effector CD8 T cell function regulated by T-bet

    Brandon M. Sullivan, Amy Juedes, Susanne J. Szabo, Matthias von Herrath, and Laurie H. Glimcher

    PNAS December 23, 2003 100 (26) 15818-15823; https://doi.org/10.1073/pnas.2636938100
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    Cell surface expression of an endoplasmic reticulum resident heat shock protein gp96 triggers MyD88-dependent systemic autoimmune diseases

    Bei Liu, Jie Dai, Hong Zheng, Diliana Stoilova, Shaoli Sun, and Zihai Li

    PNAS December 23, 2003 100 (26) 15824-15829; https://doi.org/10.1073/pnas.2635458100
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    Induction of colitis by a CD4⁺ T cell clone specific for a bacterial epitope

    Marika C. Kullberg, John F. Andersen, Peter L. Gorelick, Patricia Caspar, Sebastian Suerbaum, James G. Fox, Allen W. Cheever, Dragana Jankovic, and Alan Sher

    PNAS December 23, 2003 100 (26) 15830-15835; https://doi.org/10.1073/pnas.2534546100

• Medical Sciences

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    Inhibition of mutant p53 expression and growth of DMS-153 small cell lung carcinoma by antagonists of growth hormone-releasing hormone and bombesin

    Celia A. Kanashiro, Andrew V. Schally, Kate Groot, Patricia Armatis, Andrea L. F. Bernardino, and Jozsef L. Varga

    PNAS December 23, 2003 100 (26) 15836-15841; https://doi.org/10.1073/pnas.2536558100
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    Activation of latent myostatin by the BMP-1/tolloid family of metalloproteinases

    Neil M. Wolfman, Alexandra C. McPherron, William N. Pappano, Monique V. Davies, Kening Song, Kathleen N. Tomkinson, Jill F. Wright, Liz Zhao, Suzanne M. Sebald, Daniel S. Greenspan, and Se-Jin Lee

    PNAS December 23, 2003 100 (26) 15842-15846; https://doi.org/10.1073/pnas.2534946100
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    Anion exchanger 2 is essential for spermiogenesis in mice

    Juan F. Medina, Sergio Recalde, Jesús Prieto, Jon Lecanda, Elena Sáez, Colin D. Funk, Paola Vecino, Marian A. van Roon, Roelof Ottenhoff, Piter J. Bosma, Conny T. Bakker, and Ronald P. J. Oude Elferink

    PNAS December 23, 2003 100 (26) 15847-15852; https://doi.org/10.1073/pnas.2536127100
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    Evidence that transgenes encoding components of the Wnt signaling pathway preferentially induce mammary cancers from progenitor cells

    Yi Li, Bryan Welm, Katrina Podsypanina, Shixia Huang, Mario Chamorro, Xiaomei Zhang, Tracey Rowlands, Mikala Egeblad, Pam Cowin, Zena Werb, Lee K. Tan, Jeffrey M. Rosen, and Harold E. Varmus

    PNAS December 23, 2003 100 (26) 15853-15858; https://doi.org/10.1073/pnas.2136825100
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    Transforming growth factor β1 induction of vascular endothelial growth factor receptor 1: Mechanism of pericyte-induced vascular survival in vivo

    Shu-Ching Shih, Meihua Ju, Nan Liu, Jan-Rung Mo, Joshua J. Ney, and Lois E. H. Smith

    PNAS December 23, 2003 100 (26) 15859-15864; https://doi.org/10.1073/pnas.2136855100
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    Disruption of hepatitis C virus RNA replication through inhibition of host protein geranylgeranylation

    Jin Ye, Chunfu Wang, Rhea Sumpter Jr., Michael S. Brown, Joseph L. Goldstein, and Michael Gale Jr.

    PNAS December 23, 2003 100 (26) 15865-15870; https://doi.org/10.1073/pnas.2237238100
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    Antitumor efficacy of cytotoxic drugs and the monoclonal antibody 806 is enhanced by the EGF receptor inhibitor AG1478

    Terrance G. Johns, Rodney B. Luwor, Carmel Murone, Francesca Walker, Janet Weinstock, Angela A. Vitali, Rushika M. Perera, Achim A. Jungbluth, Elisabeth Stockert, Lloyd J. Old, Edouard C. Nice, Antony W. Burgess, and Andrew M. Scott

    PNAS December 23, 2003 100 (26) 15871-15876; https://doi.org/10.1073/pnas.2036503100
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    Primitive adult hematopoietic stem cells can function as osteoblast precursors

    Elizabeth A. Olmsted-Davis, Zbigniew Gugala, Fernando Camargo, Francis H. Gannon, KathyJo Jackson, Kirsten Anderson Kienstra, H. David Shine, Ronald W. Lindsey, Karen K. Hirschi, Margaret A. Goodell, Malcolm K. Brenner, and Alan R. Davis

    PNAS December 23, 2003 100 (26) 15877-15882; https://doi.org/10.1073/pnas.2632959100
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    Targeted deletion of apoptosis signal-regulating kinase 1 attenuates left ventricular remodeling

    Osamu Yamaguchi, Yoshiharu Higuchi, Shinichi Hirotani, Kazunori Kashiwase, Hiroyuki Nakayama, Shungo Hikoso, Toshihiro Takeda, Tetsuya Watanabe, Michio Asahi, Masayuki Taniike, Yasushi Matsumura, Ikuko Tsujimoto, Kenichi Hongo, Yoichiro Kusakari, Satoshi Kurihara, Kazuhiko Nishida, Hidenori Ichijo, Masatsugu Hori, and Kinya Otsu

    PNAS December 23, 2003 100 (26) 15883-15888; https://doi.org/10.1073/pnas.2136717100
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    Ebola virus-like particles protect from lethal Ebola virus infection

    Kelly L. Warfield, Catharine M. Bosio, Brent C. Welcher, Emily M. Deal, Mansour Mohamadzadeh, Alan Schmaljohn, M. Javad Aman, and Sina Bavari

    PNAS December 23, 2003 100 (26) 15889-15894; https://doi.org/10.1073/pnas.2237038100
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    Leukocyte-inspired biodegradable particles that selectively and avidly adhere to inflamed endothelium in vitro and in vivo

    Harshad S. Sakhalkar, Milind K. Dalal, Aliasger K. Salem, Ramin Ansari, Jie Fu, Mohammad F. Kiani, David T. Kurjiaka, Justin Hanes, Kevin M. Shakesheff, and Douglas J. Goetz

    PNAS December 23, 2003 100 (26) 15895-15900; https://doi.org/10.1073/pnas.2631433100
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    Gene expression profiles of primary breast tumors maintained in distant metastases

    Britta Weigelt, Annuska M. Glas, Lodewyk F. A. Wessels, Anke T. Witteveen, Johannes L. Peterse, and Laura J. van't Veer

    PNAS December 23, 2003 100 (26) 15901-15905; https://doi.org/10.1073/pnas.2634067100
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    Transgenic mouse model for echovirus myocarditis and paralysis

    Scott A. Hughes, Harshwardhan M. Thaker, and Vincent R. Racaniello

    PNAS December 23, 2003 100 (26) 15906-15911; https://doi.org/10.1073/pnas.2535934100
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    Chemical chaperone therapy for brain pathology in G_M1-gangliosidosis

    Junichiro Matsuda, Osamu Suzuki, Akihiro Oshima, Yoshie Yamamoto, Akira Noguchi, Kazuhiro Takimoto, Masayuki Itoh, Yuji Matsuzaki, Yosuke Yasuda, Seiichiro Ogawa, Yuko Sakata, Eiji Nanba, Katsumi Higaki, Yoshimi Ogawa, Lika Tominaga, Kousaku Ohno, Hiroyuki Iwasaki, Hiroshi Watanabe, Roscoe O. Brady, and Yoshiyuki Suzuki

    PNAS December 23, 2003 100 (26) 15912-15917; https://doi.org/10.1073/pnas.2536657100
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    Hypervirulent mutant of Mycobacterium tuberculosis resulting from disruption of the mce1 operon

    Nobuyuki Shimono, Lisa Morici, Nicola Casali, Sally Cantrell, Ben Sidders, Sabine Ehrt, and Lee W. Riley

    PNAS December 23, 2003 100 (26) 15918-15923; https://doi.org/10.1073/pnas.2433882100
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    Activation of peroxisome proliferator-activated receptor δ induces fatty acid β-oxidation in skeletal muscle and attenuates metabolic syndrome

    Toshiya Tanaka, Joji Yamamoto, Satoshi Iwasaki, Hiroshi Asaba, Hiroki Hamura, Yukio Ikeda, Mitsuhiro Watanabe, Kenta Magoori, Ryoichi X. Ioka, Keisuke Tachibana, Yuichiro Watanabe, Yasutoshi Uchiyama, Koichi Sumi, Haruhisa Iguchi, Sadayoshi Ito, Takefumi Doi, Takao Hamakubo, Makoto Naito, Johan Auwerx, Masashi Yanagisawa, Tatsuhiko Kodama, and Juro Sakai

    PNAS December 23, 2003 100 (26) 15924-15929; https://doi.org/10.1073/pnas.0306981100
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    Arf tumor suppressor promoter monitors latent oncogenic signals in vivo

    Frederique Zindy, Richard T. Williams, Troy A. Baudino, Jerold E. Rehg, Stephen X. Skapek, John L. Cleveland, Martine F. Roussel, and Charles J. Sherr

    PNAS December 23, 2003 100 (26) 15930-15935; https://doi.org/10.1073/pnas.2536808100

• Microbiology

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    In vivo oligomerization and raft localization of Ebola virus protein VP40 during vesicular budding

    Rekha G. Panchal, Gordon Ruthel, Tara A. Kenny, George H. Kallstrom, Douglas Lane, Shirin S. Badie, Limin Li, Sina Bavari, and M. Javad Aman

    PNAS December 23, 2003 100 (26) 15936-15941; https://doi.org/10.1073/pnas.2533915100
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    Binding of Plasmodium falciparum-infected erythrocytes to the membrane-bound form of Fractalkine/CX₃CL1

    Toshimitsu Hatabu, Shin-ichiro Kawazu, Masamichi Aikawa, and Shigeyuki Kano

    PNAS December 23, 2003 100 (26) 15942-15946; https://doi.org/10.1073/pnas.2534560100
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    Structural and functional characterization of the VirB5 protein from the type IV secretion system encoded by the conjugative plasmid pKM101

    Hye-Jeong Yeo, Qing Yuan, Moriah R. Beck, Christian Baron, and Gabriel Waksman

    PNAS December 23, 2003 100 (26) 15947-15952; https://doi.org/10.1073/pnas.2535211100
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    Borrelia burgdorferi transcriptome in the central nervous system of non-human primates

    Sukanya Narasimhan, Melissa J. Camaino, Fang Ting Liang, Felix Santiago, Michelle Laskowski, Mario T. Philipp, Andrew R. Pachner, Justin D. Radolf, and Erol Fikrig

    PNAS December 23, 2003 100 (26) 15953-15958; https://doi.org/10.1073/pnas.2432412100
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    A role for mechanosensitive channels in survival of stationary phase: Regulation of channel expression by RpoS

    Neil R. Stokes, Heath D. Murray, Chandrasekaran Subramaniam, Richard L. Gourse, Petra Louis, Wendy Bartlett, Samantha Miller, and Ian R. Booth

    PNAS December 23, 2003 100 (26) 15959-15964; https://doi.org/10.1073/pnas.2536607100
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    Enhanced biocontrol activity of Trichoderma through inactivation of a mitogen-activated protein kinase

    Artemio Mendoza-Mendoza, María J. Pozo, Darlene Grzegorski, Pedro Martínez, Juan M. García, Vianey Olmedo-Monfil, Carlos Cortés, Charles Kenerley, and Alfredo Herrera-Estrella

    PNAS December 23, 2003 100 (26) 15965-15970; https://doi.org/10.1073/pnas.2136716100
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    Transcriptome analysis of chlamydial growth during IFN-γ-mediated persistence and reactivation

    Robert J. Belland, David E. Nelson, Dezso Virok, Deborah D. Crane, Daniel Hogan, Daniel Sturdevant, Wandy L. Beatty, and Harlan D. Caldwell

    PNAS December 23, 2003 100 (26) 15971-15976; https://doi.org/10.1073/pnas.2535394100
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    Differential survival of solitary and aggregated bacterial cells promotes aggregate formation on leaf surfaces

    J.-M. Monier and S. E. Lindow

    PNAS December 23, 2003 100 (26) 15977-15982; https://doi.org/10.1073/pnas.2436560100

• Neuroscience

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    Migration and differentiation of neural precursor cells can be directed by microglia

    Johan Aarum, Kristian Sandberg, Samantha L. Budd Haeberlein, and Mats A. A. Persson

    PNAS December 23, 2003 100 (26) 15983-15988; https://doi.org/10.1073/pnas.2237050100
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    Reversing cerebellar long-term depression

    Varda Lev-Ram, Samar B. Mehta, David Kleinfeld, and Roger Y. Tsien

    PNAS December 23, 2003 100 (26) 15989-15993; https://doi.org/10.1073/pnas.2636935100
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    Heterogeneity of rhythmic suprachiasmatic nucleus neurons: Implications for circadian waveform and photoperiodic encoding

    Jeroen Schaap, Henk Albus, Henk Tjebbe vanderLeest, Paul H. C. Eilers, László Détári, and Johanna H. Meijer

    PNAS December 23, 2003 100 (26) 15994-15999; https://doi.org/10.1073/pnas.2436298100
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    Dissociation of spikes, synaptic activity, and activity-dependent increments in rat cerebellar blood flow by tonic synaptic inhibition

    Kirsten Caesar, Kirsten Thomsen, and Martin Lauritzen

    PNAS December 23, 2003 100 (26) 16000-16005; https://doi.org/10.1073/pnas.2635195100
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    Protein phosphatase 2C binds selectively to and dephosphorylates metabotropic glutamate receptor 3

    Marc Flajolet, Sergey Rakhilin, Hong Wang, Natalia Starkova, Nina Nuangchamnong, Angus C. Nairn, and Paul Greengard

    PNAS December 23, 2003 100 (26) 16006-16011; https://doi.org/10.1073/pnas.2136600100
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    Fundamental role of the Rip2/caspase-1 pathway in hypoxia and ischemia-induced neuronal cell death

    Wen-Hua Zhang, Xin Wang, Malini Narayanan, Yu Zhang, Chunfeng Huo, John C. Reed, and Robert M. Friedlander

    PNAS December 23, 2003 100 (26) 16012-16017; https://doi.org/10.1073/pnas.2534856100
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    Increased phosphorylation of the neuronal L-type Ca²⁺ channel Ca_v1.2 during aging

    Monika A. Davare and Johannes W. Hell

    PNAS December 23, 2003 100 (26) 16018-16023; https://doi.org/10.1073/pnas.2236970100
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    Motility of dendritic spines in visual cortex in vivo: Changes during the critical period and effects of visual deprivation

    Ania Majewska and Mriganka Sur

    PNAS December 23, 2003 100 (26) 16024-16029; https://doi.org/10.1073/pnas.2636949100
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    Molecular basis of calcium regulation in connexin-32 hemichannels

    Juan M. Gómez-Hernández, Marta de Miguel, Belen Larrosa, Daniel González, and Luis C. Barrio

    PNAS December 23, 2003 100 (26) 16030-16035; https://doi.org/10.1073/pnas.2530348100
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    Symmetry considerations and development of pinwheels in visual maps

    Ha Youn Lee, Mehdi Yahyanejad, and Mehran Kardar

    PNAS December 23, 2003 100 (26) 16036-16040; https://doi.org/10.1073/pnas.2531343100
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    Unstable mutants in the peripheral endosomal membrane component ALS2 cause early-onset motor neuron disease

    Koji Yamanaka, Christine Vande Velde, Eleonore Eymard-Pierre, Enrico Bertini, Odile Boespflug-Tanguy, and Don W. Cleveland

    PNAS December 23, 2003 100 (26) 16041-16046; https://doi.org/10.1073/pnas.2635267100
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    Cation–chloride cotransporters mediate neural computation in the retina

    Konstantin E. Gavrikov, Andrey V. Dmitriev, Kent T. Keyser, and Stuart C. Mangel

    PNAS December 23, 2003 100 (26) 16047-16052; https://doi.org/10.1073/pnas.2637041100
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    Dynamic analysis of larval locomotion in Drosophila chordotonal organ mutants

    Jason C. Caldwell, Matthew M. Miller, Susan Wing, David R. Soll, and Daniel F. Eberl

    PNAS December 23, 2003 100 (26) 16053-16058; https://doi.org/10.1073/pnas.2535546100
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    Molecular determinants of Ca²⁺/calmodulin-dependent regulation of Ca_v2.1 channels

    Amy Lee, Hong Zhou, Todd Scheuer, and William A. Catterall

    PNAS December 23, 2003 100 (26) 16059-16064; https://doi.org/10.1073/pnas.2237000100
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    Contribution of transient receptor potential channels to the control of GABA release from dendrites

    Thomas Munsch, Marc Freichel, Veit Flockerzi, and Hans-Christian Pape

    PNAS December 23, 2003 100 (26) 16065-16070; https://doi.org/10.1073/pnas.2535311100
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    Targeting Schwann cells by nonlytic arenaviral infection selectively inhibits myelination

    Anura Rambukkana, Stefan Kunz, Jenny Min, Kevin P. Campbell, and Michael B. A. Oldstone

    PNAS December 23, 2003 100 (26) 16071-16076; https://doi.org/10.1073/pnas.2232366100

• Pharmacology

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    Gi protein activation in intact cells involves subunit rearrangement rather than dissociation

    • From the Cover

    Moritz Bünemann, Monika Frank, and Martin J. Lohse

    PNAS December 23, 2003 100 (26) 16077-16082; https://doi.org/10.1073/pnas.2536719100

• Physiology

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    Abnormal surface liquid pH regulation by cultured cystic fibrosis bronchial epithelium

    Raymond D. Coakley, Barbara R. Grubb, Anthony M. Paradiso, John T. Gatzy, Larry G. Johnson, Sylvia M. Kreda, Wanda K. O'Neal, and Richard C. Boucher

    PNAS December 23, 2003 100 (26) 16083-16088; https://doi.org/10.1073/pnas.2634339100
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    Circadian gene expression in mammalian fibroblasts revealed by real-time luminescence reporting: Temperature compensation and damping

    Mariko Izumo, Carl Hirschie Johnson, and Shin Yamazaki

    PNAS December 23, 2003 100 (26) 16089-16094; https://doi.org/10.1073/pnas.2536313100

• Plant Biology

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    Vacuolar sorting receptor for seed storage proteins in Arabidopsis thaliana

    Tomoo Shimada, Kentaro Fuji, Kentaro Tamura, Maki Kondo, Mikio Nishimura, and Ikuko Hara-Nishimura

    PNAS December 23, 2003 100 (26) 16095-16100; https://doi.org/10.1073/pnas.2530568100
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    High-affinity salicylic acid-binding protein 2 is required for plant innate immunity and has salicylic acid-stimulated lipase activity

    Dhirendra Kumar and Daniel F. Klessig

    PNAS December 23, 2003 100 (26) 16101-16106; https://doi.org/10.1073/pnas.0307162100
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    Thioredoxin-linked processes in cyanobacteria are as numerous as in chloroplasts, but targets are different

    Marika Lindahl and Francisco J. Florencio

    PNAS December 23, 2003 100 (26) 16107-16112; https://doi.org/10.1073/pnas.2534397100
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    A comprehensive analysis of hydrogen peroxide-induced gene expression in tobacco

    Steven Vandenabeele, Katrien Van Der Kelen, James Dat, Ilya Gadjev, Tom Boonefaes, Stijn Morsa, Pieter Rottiers, Luit Slooten, Marc Van Montagu, Marc Zabeau, Dirk Inzé, and Frank Van Breusegem

    PNAS December 23, 2003 100 (26) 16113-16118; https://doi.org/10.1073/pnas.2136610100
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    Arabidopsis CHL27, located in both envelope and thylakoid membranes, is required for the synthesis of protochlorophyllide

    Stephen Tottey, Maryse A. Block, Michael Allen, Tomas Westergren, Catherine Albrieux, Henrik V. Scheller, Sabeeha Merchant, and Poul Erik Jensen

    PNAS December 23, 2003 100 (26) 16119-16124; https://doi.org/10.1073/pnas.2136793100
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    Chemocyanin, a small basic protein from the lily stigma, induces pollen tube chemotropism

    • From the Cover

    Sunran Kim, Jean-Claude Mollet, Juan Dong, Kangling Zhang, Sang-Youl Park, and Elizabeth M. Lord

    PNAS December 23, 2003 100 (26) 16125-16130; https://doi.org/10.1073/pnas.2533800100

• Psychology

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    Fear of novelty in infant rats predicts adult corticosterone dynamics and an early death

    S. A. Cavigelli and M. K. McClintock

    PNAS December 23, 2003 100 (26) 16131-16136; https://doi.org/10.1073/pnas.2535721100
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    Juvenile emotional experience alters synaptic composition in the rodent cortex, hippocampus, and lateral amygdala

    Gerd Poeggel, Carina Helmeke, Andreas Abraham, Tina Schwabe, Patricia Friedrich, and Katharina Braun

    PNAS December 23, 2003 100 (26) 16137-16142; https://doi.org/10.1073/pnas.2434663100