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Table of Contents

March 16, 2004; vol. 101 no. 11

Editorial

  • You have access
    UPSIDE: Uniform Principle for Sharing Integral Data and Materials Expeditiously
    Nicholas R. Cozzarelli
    PNAS March 16, 2004 101 (11) 3721-3722; https://doi.org/10.1073/pnas.0400437101

Commentaries

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    What arthropod brains say about arthropod phylogeny
    Susan E. Fahrbach
    PNAS March 16, 2004 101 (11) 3723-3724; https://doi.org/10.1073/pnas.0400472101

    See companion article:

    • The brain of the Remipedia (Crustacea) and an alternative hypothesis on their phylogenetic relationships
      - Mar 05, 2004
  • You have access
    Controlling lentiviruses: Single amino acid changes can determine specificity
    Shari M. Kaiser and Michael Emerman
    PNAS March 16, 2004 101 (11) 3725-3726; https://doi.org/10.1073/pnas.0400929101

    See companion article:

    • A single amino acid of APOBEC3G controls its species-specific interaction with virion infectivity factor (Vif)
      - Feb 20, 2004
    • A single amino acid difference in the host APOBEC3G protein controls the primate species specificity of HIV type 1 virion infectivity factor
      - Mar 03, 2004

Biography

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    Biography of Martha L. Ludwig
    • Inaugural Article
    Emma Hitt
    PNAS March 16, 2004 101 (11) 3727-3728; https://doi.org/10.1073/pnas.0401014101

    See companion article:

    • Structures of the N-terminal modules imply large domain motions during catalysis by methionine synthase
      - Jan 29, 2004
  • You have access
    Biography of Jan-Åke Gustafsson
    • Inaugural Article
    Christen Brownlee
    PNAS March 16, 2004 101 (11) 3737-3738; https://doi.org/10.1073/pnas.0401117101

    See companion article:

    • Estrogen receptors ERα and ERβ in proliferation in the rodent mammary gland
      - Feb 04, 2004

Physical Sciences

  • Applied Physical Sciences

    • You have access
      The architecture of complex weighted networks
      A. Barrat, M. Barthélemy, R. Pastor-Satorras, and A. Vespignani
      PNAS March 16, 2004 101 (11) 3747-3752; https://doi.org/10.1073/pnas.0400087101
  • Geology

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      Chicxulub impact predates the K-T boundary mass extinction
      • From the Cover
      Gerta Keller, Thierry Adatte, Wolfgang Stinnesbeck, Mario Rebolledo-Vieyra, Jaime Urrutia Fucugauchi, Utz Kramar, and Doris Stüben
      PNAS March 16, 2004 101 (11) 3753-3758; https://doi.org/10.1073/pnas.0400396101

Biological Sciences

  • Biochemistry

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      Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli
      Jaya K. Kumar, Stanley Tabor, and Charles C. Richardson
      PNAS March 16, 2004 101 (11) 3759-3764; https://doi.org/10.1073/pnas.0308701101
    • You have access
      Universality and flexibility in gene expression from bacteria to human
      Hiroki R. Ueda, Satoko Hayashi, Shinichi Matsuyama, Tetsuya Yomo, Seiichi Hashimoto, Steve A. Kay, John B. Hogenesch, and Masamitsu Iino
      PNAS March 16, 2004 101 (11) 3765-3769; https://doi.org/10.1073/pnas.0306244101
    • You have access
      A single amino acid difference in the host APOBEC3G protein controls the primate species specificity of HIV type 1 virion infectivity factor
      • From the Cover
      Hal P. Bogerd, Brian P. Doehle, Heather L. Wiegand, and Bryan R. Cullen
      PNAS March 16, 2004 101 (11) 3770-3774; https://doi.org/10.1073/pnas.0307713101

      See companion article:

      • Controlling lentiviruses: Single amino acid changes can determine specificity
        - Mar 09, 2004
    • You have access
      Fhit is a physiological target of the protein kinase Src
      Yuri Pekarsky, Preston N. Garrison, Alexey Palamarchuk, Nicola Zanesi, Rami I. Aqeilan, Kay Huebner, Larry D. Barnes, and Carlo M. Croce
      PNAS March 16, 2004 101 (11) 3775-3779; https://doi.org/10.1073/pnas.0400481101
    • You have access
      Activation of the antioxidant enzyme 1-CYS peroxiredoxin requires glutathionylation mediated by heterodimerization with πGST
      Y. Manevich, S. I. Feinstein, and A. B. Fisher
      PNAS March 16, 2004 101 (11) 3780-3785; https://doi.org/10.1073/pnas.0400181101
    • You have access
      Isolation of antibiotic resistance mutations in the rRNA by using an in vitro selection system
      Luisa Cochella and Rachel Green
      PNAS March 16, 2004 101 (11) 3786-3791; https://doi.org/10.1073/pnas.0307596101
    • You have access
      The severe acute respiratory syndrome-coronavirus replicative protein nsp9 is a single-stranded RNA-binding subunit unique in the RNA virus world
      Marie-Pierre Egloff, François Ferron, Valérie Campanacci, Sonia Longhi, Corinne Rancurel, Hélène Dutartre, Eric J. Snijder, Alexander E. Gorbalenya, Christian Cambillau, and Bruno Canard
      PNAS March 16, 2004 101 (11) 3792-3796; https://doi.org/10.1073/pnas.0307877101
  • Biophysics

    • You have access
      Structures of the N-terminal modules imply large domain motions during catalysis by methionine synthase
      • Inaugural Article
      John C. Evans, Donald P. Huddler, Mark T. Hilgers, Gail Romanchuk, Rowena G. Matthews, and Martha L. Ludwig
      PNAS March 16, 2004 101 (11) 3729-3736; https://doi.org/10.1073/pnas.0308082100

      See companion article:

      • Biography of Martha L. Ludwig
        - Mar 09, 2004
    • You have access
      Local feature frequency profile: A method to measure structural similarity in proteins
      In-Geol Choi, Jaimyoung Kwon, and Sung-Hou Kim
      PNAS March 16, 2004 101 (11) 3797-3802; https://doi.org/10.1073/pnas.0308656100
    • You have access
      Protein dynamics and the immunological evolution of molecular recognition
      Ralph Jimenez, Georgina Salazar, Jun Yin, Taiha Joo, and Floyd E. Romesberg
      PNAS March 16, 2004 101 (11) 3803-3808; https://doi.org/10.1073/pnas.0305745101
    • You have access
      Microsecond folding dynamics of the F13W G29A mutant of the B domain of staphylococcal protein A by laser-induced temperature jump
      George Dimitriadis, Adam Drysdale, Jeffrey K. Myers, Pooja Arora, Sheena E. Radford, Terence G. Oas, and D. Alastair Smith
      PNAS March 16, 2004 101 (11) 3809-3814; https://doi.org/10.1073/pnas.0306433101
    • You have access
      The predicted 3D structure of the human D2 dopamine receptor and the binding site and binding affinities for agonists and antagonists
      M. Yashar S. Kalani, Nagarajan Vaidehi, Spencer E. Hall, Rene J. Trabanino, Peter L. Freddolino, Maziyar A. Kalani, Wely B. Floriano, Victor Wai Tak Kam, and William A. Goddard III
      PNAS March 16, 2004 101 (11) 3815-3820; https://doi.org/10.1073/pnas.0400100101
    • You have access
      Structural basis for the function of a minimembrane protein subunit of yeast oligosaccharyltransferase
      Sergey Zubkov, William J. Lennarz, and Smita Mohanty
      PNAS March 16, 2004 101 (11) 3821-3826; https://doi.org/10.1073/pnas.0400512101
  • Cell Biology

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      Vascularized thymic lobe transplantation in miniature swine: Thymopoiesis and tolerance induction across fully MHC-mismatched barriers
      Chisako Kamano, Parsia A. Vagefi, Naoki Kumagai, Shin Yamamoto, Rolf N. Barth, John C. LaMattina, Shannon G. Moran, David H. Sachs, and Kazuhiko Yamada
      PNAS March 16, 2004 101 (11) 3827-3832; https://doi.org/10.1073/pnas.0306666101
    • You have access
      Tandem MS analysis of brain clathrin-coated vesicles reveals their critical involvement in synaptic vesicle recycling
      Francois Blondeau, Brigitte Ritter, Patrick D. Allaire, Sylwia Wasiak, Martine Girard, Natasha K. Hussain, Annie Angers, Valerie Legendre-Guillemin, Line Roy, Daniel Boismenu, Robert E. Kearney, Alexander W. Bell, John J. M. Bergeron, and Peter S. McPherson
      PNAS March 16, 2004 101 (11) 3833-3838; https://doi.org/10.1073/pnas.0308186101
    • You have access
      Magnetosome vesicles are present before magnetite formation, and MamA is required for their activation
      Arash Komeili, Hojatollah Vali, Terrance J. Beveridge, and Dianne K. Newman
      PNAS March 16, 2004 101 (11) 3839-3844; https://doi.org/10.1073/pnas.0400391101
    • You have access
      Cholesterol depletion induces PKA-mediated basolateral-to-apical transcytosis of the scavenger receptor class B type I in MDCK cells
      Patricia V. Burgos, Carla Klattenhoff, Erwin de la Fuente, Attilio Rigotti, and Alfonso González
      PNAS March 16, 2004 101 (11) 3845-3850; https://doi.org/10.1073/pnas.0400295101
  • Developmental Biology

    • You have access
      Coordinate enhancers share common organizational features in the Drosophila genome
      Albert Erives and Michael Levine
      PNAS March 16, 2004 101 (11) 3851-3856; https://doi.org/10.1073/pnas.0400611101
    • You have access
      Repression of dMyc expression by Wingless promotes Rbf-induced G1 arrest in the presumptive Drosophila wing margin
      Molly Duman-Scheel, Laura A. Johnston, and Wei Du
      PNAS March 16, 2004 101 (11) 3857-3862; https://doi.org/10.1073/pnas.0400526101
  • Ecology

    • You have access
      Physiologically mediated self/non-self discrimination in roots
      • From the Cover
      Michal Gruntman and Ariel Novoplansky
      PNAS March 16, 2004 101 (11) 3863-3867; https://doi.org/10.1073/pnas.0306604101
  • Evolution

    • You have access
      The brain of the Remipedia (Crustacea) and an alternative hypothesis on their phylogenetic relationships
      • From the Cover
      Martin Fanenbruck, Steffen Harzsch, and Johann Wolfgang Wägele
      PNAS March 16, 2004 101 (11) 3868-3873; https://doi.org/10.1073/pnas.0306212101

      See companion article:

      • What arthropod brains say about arthropod phylogeny
        - Mar 09, 2004
  • Immunology

    • You have access
      Spontaneous proliferation, a response of naïve CD4 T cells determined by the diversity of the memory cell repertoire
      Booki Min, Gilles Foucras, Martin Meier-Schellersheim, and William E. Paul
      PNAS March 16, 2004 101 (11) 3874-3879; https://doi.org/10.1073/pnas.0400606101
    • You have access
      Interleukin 2 plays a central role in Th2 differentiation
      Javier Cote-Sierra, Gilles Foucras, Liying Guo, Lynda Chiodetti, Howard A. Young, Jane Hu-Li, Jinfang Zhu, and William E. Paul
      PNAS March 16, 2004 101 (11) 3880-3885; https://doi.org/10.1073/pnas.0400339101
    • You have access
      Identification of a specific self-reactive IgM antibody that initiates intestinal ischemia/reperfusion injury
      Ming Zhang, William G. Austen Jr., Isaac Chiu, Elisabeth M. Alicot, Rachel Hung, Minghe Ma, Nicola Verna, Min Xu, Herbert B. Hechtman, Francis D. Moore Jr., and Michael C. Carroll
      PNAS March 16, 2004 101 (11) 3886-3891; https://doi.org/10.1073/pnas.0400347101
    • You have access
      T cell immunity using transgenic B lymphocytes
      Mara Gerloni, Marta Rizzi, Paola Castiglioni, and Maurizio Zanetti
      PNAS March 16, 2004 101 (11) 3892-3897; https://doi.org/10.1073/pnas.0400138101
    • You have access
      The E47 transcription factor negatively regulates CD5 expression during thymocyte development
      Yang Yang, Christopher H. Contag, Dean Felsher, Catherine M. Shachaf, Yuan Cao, Leonard A. Herzenberg, Leonore A. Herzenberg, and James W. Tung
      PNAS March 16, 2004 101 (11) 3898-3902; https://doi.org/10.1073/pnas.0308764101
    • You have access
      Impaired IgA class switching in APRIL-deficient mice
      Emanuela Castigli, Sumi Scott, Fatma Dedeoglu, Paul Bryce, Haifa Jabara, Atul K. Bhan, Emiko Mizoguchi, and Raif S. Geha
      PNAS March 16, 2004 101 (11) 3903-3908; https://doi.org/10.1073/pnas.0307348101
    • You have access
      Defective development of splenic and epidermal CD4+ dendritic cells in mice deficient for IFN regulatory factor-2
      Eri Ichikawa, Shigeaki Hida, Yoshiki Omatsu, Susumu Shimoyama, Kazuhiko Takahara, Shinichi Miyagawa, Kayo Inaba, and Shinsuke Taki
      PNAS March 16, 2004 101 (11) 3909-3914; https://doi.org/10.1073/pnas.0400610101
  • Medical Sciences

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      Acute myeloid leukemia with complex karyotypes and abnormal chromosome 21: Amplification discloses overexpression of APP, ETS2, and ERG genes
      Claudia D. Baldus, Sandya Liyanarachchi, Krzysztof Mrózek, Herbert Auer, Stephan M. Tanner, Martin Guimond, Amy S. Ruppert, Nehad Mohamed, Ramana V. Davuluri, Michael A. Caligiuri, Clara D. Bloomfield, and Albert de la Chapelle
      PNAS March 16, 2004 101 (11) 3915-3920; https://doi.org/10.1073/pnas.0400272101
    • You have access
      Histone deacetylase inhibitor suberoylanilide hydroxamic acid reduces acute graft-versus-host disease and preserves graft-versus-leukemia effect
      Pavan Reddy, Yoshinobu Maeda, Kevin Hotary, Chen Liu, Leonid L. Reznikov, Charles A. Dinarello, and James L. M. Ferrara
      PNAS March 16, 2004 101 (11) 3921-3926; https://doi.org/10.1073/pnas.0400380101
    • You have access
      A single amino acid of APOBEC3G controls its species-specific interaction with virion infectivity factor (Vif)
      • From the Cover
      Bärbel Schröfelbauer, Darlene Chen, and Nathaniel R. Landau
      PNAS March 16, 2004 101 (11) 3927-3932; https://doi.org/10.1073/pnas.0307132101

      See companion article:

      • Controlling lentiviruses: Single amino acid changes can determine specificity
        - Mar 09, 2004
    • You have access
      Topical DNA oligonucleotide therapy reduces UV-induced mutations and photocarcinogenesis in hairless mice
      David A. Goukassian, Elizabeth Helms, Harry van Steeg, Conny van Oostrom, Jag Bhawan, and Barbara A. Gilchrest
      PNAS March 16, 2004 101 (11) 3933-3938; https://doi.org/10.1073/pnas.0306389101
    • You have access
      β2-Glycoprotein I binds factor XI and inhibits its activation by thrombin and factor XIIa: Loss of inhibition by clipped β2-glycoprotein I
      Tong Shi, G. Michael Iverson, Jian C. Qi, Keith A. Cockerill, Matthew D. Linnik, Pamela Konecny, and Steven A. Krilis
      PNAS March 16, 2004 101 (11) 3939-3944; https://doi.org/10.1073/pnas.0400281101
  • Microbiology

    • You have access
      Docking of cytosolic chaperone-substrate complexes at the membrane ATPase during flagellar type III protein export
      Joanne Thomas, Graham P. Stafford, and Colin Hughes
      PNAS March 16, 2004 101 (11) 3945-3950; https://doi.org/10.1073/pnas.0307223101
  • Neuroscience

    • You have access
      Fluorometric measurements of conformational changes in glutamate transporters
      H. Peter Larsson, Anastassios V. Tzingounis, Hans P. Koch, and Michael P. Kavanaugh
      PNAS March 16, 2004 101 (11) 3951-3956; https://doi.org/10.1073/pnas.0306737101
    • You have access
      Timing of brain-derived neurotrophic factor exposure affects life expectancy of new neurons
      Benjamín Alvarez-Borda, Bhagwattie Haripal, and Fernando Nottebohm
      PNAS March 16, 2004 101 (11) 3957-3961; https://doi.org/10.1073/pnas.0308118101
    • You have access
      The scaling of frontal cortex in primates and carnivores
      Eliot C. Bush and John M. Allman
      PNAS March 16, 2004 101 (11) 3962-3966; https://doi.org/10.1073/pnas.0305760101
    • You have access
      GABA-mediated giant depolarizing potentials as coincidence detectors for enhancing synaptic efficacy in the developing hippocampus
      • From the Cover
      Alexander M. Kasyanov, Victoria F. Safiulina, Leon L. Voronin, and Enrico Cherubini
      PNAS March 16, 2004 101 (11) 3967-3972; https://doi.org/10.1073/pnas.0305974101
    • You have access
      Stress-induced structural remodeling in hippocampus: Prevention by lithium treatment
      Gwendolyn E. Wood, L. Trevor Young, Lawrence P. Reagan, Biao Chen, and Bruce S. McEwen
      PNAS March 16, 2004 101 (11) 3973-3978; https://doi.org/10.1073/pnas.0400208101
  • Physiology

    • You have access
      Estrogen receptors ERα and ERβ in proliferation in the rodent mammary gland
      • Inaugural Article
      Guojun Cheng, Zhang Weihua, Margaret Warner, and Jan-Åke Gustafsson
      PNAS March 16, 2004 101 (11) 3739-3746; https://doi.org/10.1073/pnas.0307864100

      See companion article:

      • Biography of Jan-Åke Gustafsson
        - Mar 09, 2004
    • You have access
      The quantal nature of Ca2+ sparks and in situ operation of the ryanodine receptor array in cardiac cells
      Shi Qiang Wang, Michael D. Stern, Eduardo Ríos, and Heping Cheng
      PNAS March 16, 2004 101 (11) 3979-3984; https://doi.org/10.1073/pnas.0306157101
  • Plant Biology

    • You have access
      CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis
      Fernando Novillo, José M. Alonso, Joseph R. Ecker, and Julio Salinas
      PNAS March 16, 2004 101 (11) 3985-3990; https://doi.org/10.1073/pnas.0303029101

Corrections

  • You have access
    Correction for Majewska et al., Motility of dendritic spines in visual cortex in vivo: Changes during the critical period and effects of visual deprivation, PNAS 2003 100:16024-16029
    PNAS March 16, 2004 101 (11) 3991; https://doi.org/10.1073/pnas.0400521101
  • You have access
    Correction for Pearson et al., Phylogenetic and biochemical evidence for sterol synthesis in the bacterium Gemmata obscuriglobus, PNAS 2003 100:15352-15357
    PNAS March 16, 2004 101 (11) 3991; https://doi.org/10.1073/pnas.0400666101
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