Table of Contents

Biological Sciences

• Biochemistry

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    Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli

    Jaya K. Kumar, Stanley Tabor, and Charles C. Richardson

    PNAS March 16, 2004 101 (11) 3759-3764; https://doi.org/10.1073/pnas.0308701101
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    Universality and flexibility in gene expression from bacteria to human

    Hiroki R. Ueda, Satoko Hayashi, Shinichi Matsuyama, Tetsuya Yomo, Seiichi Hashimoto, Steve A. Kay, John B. Hogenesch, and Masamitsu Iino

    PNAS March 16, 2004 101 (11) 3765-3769; https://doi.org/10.1073/pnas.0306244101
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    A single amino acid difference in the host APOBEC3G protein controls the primate species specificity of HIV type 1 virion infectivity factor

    • From the Cover

    Hal P. Bogerd, Brian P. Doehle, Heather L. Wiegand, and Bryan R. Cullen

    PNAS March 16, 2004 101 (11) 3770-3774; https://doi.org/10.1073/pnas.0307713101

    See companion article:

    • Controlling lentiviruses: Single amino acid changes can determine specificity

      - Mar 16, 2004
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    Fhit is a physiological target of the protein kinase Src

    Yuri Pekarsky, Preston N. Garrison, Alexey Palamarchuk, Nicola Zanesi, Rami I. Aqeilan, Kay Huebner, Larry D. Barnes, and Carlo M. Croce

    PNAS March 16, 2004 101 (11) 3775-3779; https://doi.org/10.1073/pnas.0400481101
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    Activation of the antioxidant enzyme 1-CYS peroxiredoxin requires glutathionylation mediated by heterodimerization with πGST

    Y. Manevich, S. I. Feinstein, and A. B. Fisher

    PNAS March 16, 2004 101 (11) 3780-3785; https://doi.org/10.1073/pnas.0400181101
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    Isolation of antibiotic resistance mutations in the rRNA by using an in vitro selection system

    Luisa Cochella and Rachel Green

    PNAS March 16, 2004 101 (11) 3786-3791; https://doi.org/10.1073/pnas.0307596101
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    The severe acute respiratory syndrome-coronavirus replicative protein nsp9 is a single-stranded RNA-binding subunit unique in the RNA virus world

    Marie-Pierre Egloff, François Ferron, Valérie Campanacci, Sonia Longhi, Corinne Rancurel, Hélène Dutartre, Eric J. Snijder, Alexander E. Gorbalenya, Christian Cambillau, and Bruno Canard

    PNAS March 16, 2004 101 (11) 3792-3796; https://doi.org/10.1073/pnas.0307877101

• Biophysics

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    Structures of the N-terminal modules imply large domain motions during catalysis by methionine synthase

    • Inaugural Article

    John C. Evans, Donald P. Huddler, Mark T. Hilgers, Gail Romanchuk, Rowena G. Matthews, and Martha L. Ludwig

    PNAS March 16, 2004 101 (11) 3729-3736; https://doi.org/10.1073/pnas.0308082100

    See companion article:

    • Biography of Martha L. Ludwig

      - Mar 16, 2004
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    Local feature frequency profile: A method to measure structural similarity in proteins

    In-Geol Choi, Jaimyoung Kwon, and Sung-Hou Kim

    PNAS March 16, 2004 101 (11) 3797-3802; https://doi.org/10.1073/pnas.0308656100
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    Protein dynamics and the immunological evolution of molecular recognition

    Ralph Jimenez, Georgina Salazar, Jun Yin, Taiha Joo, and Floyd E. Romesberg

    PNAS March 16, 2004 101 (11) 3803-3808; https://doi.org/10.1073/pnas.0305745101
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    Microsecond folding dynamics of the F13W G29A mutant of the B domain of staphylococcal protein A by laser-induced temperature jump

    George Dimitriadis, Adam Drysdale, Jeffrey K. Myers, Pooja Arora, Sheena E. Radford, Terence G. Oas, and D. Alastair Smith

    PNAS March 16, 2004 101 (11) 3809-3814; https://doi.org/10.1073/pnas.0306433101
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    The predicted 3D structure of the human D2 dopamine receptor and the binding site and binding affinities for agonists and antagonists

    M. Yashar S. Kalani, Nagarajan Vaidehi, Spencer E. Hall, Rene J. Trabanino, Peter L. Freddolino, Maziyar A. Kalani, Wely B. Floriano, Victor Wai Tak Kam, and William A. Goddard III

    PNAS March 16, 2004 101 (11) 3815-3820; https://doi.org/10.1073/pnas.0400100101
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    Structural basis for the function of a minimembrane protein subunit of yeast oligosaccharyltransferase

    Sergey Zubkov, William J. Lennarz, and Smita Mohanty

    PNAS March 16, 2004 101 (11) 3821-3826; https://doi.org/10.1073/pnas.0400512101

• Cell Biology

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    Vascularized thymic lobe transplantation in miniature swine: Thymopoiesis and tolerance induction across fully MHC-mismatched barriers

    Chisako Kamano, Parsia A. Vagefi, Naoki Kumagai, Shin Yamamoto, Rolf N. Barth, John C. LaMattina, Shannon G. Moran, David H. Sachs, and Kazuhiko Yamada

    PNAS March 16, 2004 101 (11) 3827-3832; https://doi.org/10.1073/pnas.0306666101
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    Tandem MS analysis of brain clathrin-coated vesicles reveals their critical involvement in synaptic vesicle recycling

    Francois Blondeau, Brigitte Ritter, Patrick D. Allaire, Sylwia Wasiak, Martine Girard, Natasha K. Hussain, Annie Angers, Valerie Legendre-Guillemin, Line Roy, Daniel Boismenu, Robert E. Kearney, Alexander W. Bell, John J. M. Bergeron, and Peter S. McPherson

    PNAS March 16, 2004 101 (11) 3833-3838; https://doi.org/10.1073/pnas.0308186101
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    Magnetosome vesicles are present before magnetite formation, and MamA is required for their activation

    Arash Komeili, Hojatollah Vali, Terrance J. Beveridge, and Dianne K. Newman

    PNAS March 16, 2004 101 (11) 3839-3844; https://doi.org/10.1073/pnas.0400391101
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    Cholesterol depletion induces PKA-mediated basolateral-to-apical transcytosis of the scavenger receptor class B type I in MDCK cells

    Patricia V. Burgos, Carla Klattenhoff, Erwin de la Fuente, Attilio Rigotti, and Alfonso González

    PNAS March 16, 2004 101 (11) 3845-3850; https://doi.org/10.1073/pnas.0400295101

• Developmental Biology

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    Coordinate enhancers share common organizational features in the Drosophila genome

    Albert Erives and Michael Levine

    PNAS March 16, 2004 101 (11) 3851-3856; https://doi.org/10.1073/pnas.0400611101
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    Repression of dMyc expression by Wingless promotes Rbf-induced G₁ arrest in the presumptive Drosophila wing margin

    Molly Duman-Scheel, Laura A. Johnston, and Wei Du

    PNAS March 16, 2004 101 (11) 3857-3862; https://doi.org/10.1073/pnas.0400526101

• Ecology

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    Physiologically mediated self/non-self discrimination in roots

    • From the Cover

    Michal Gruntman and Ariel Novoplansky

    PNAS March 16, 2004 101 (11) 3863-3867; https://doi.org/10.1073/pnas.0306604101

• Evolution

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    The brain of the Remipedia (Crustacea) and an alternative hypothesis on their phylogenetic relationships

    • From the Cover

    Martin Fanenbruck, Steffen Harzsch, and Johann Wolfgang Wägele

    PNAS March 16, 2004 101 (11) 3868-3873; https://doi.org/10.1073/pnas.0306212101

    See companion article:

    • What arthropod brains say about arthropod phylogeny

      - Mar 16, 2004

• Immunology

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    Spontaneous proliferation, a response of naïve CD4 T cells determined by the diversity of the memory cell repertoire

    Booki Min, Gilles Foucras, Martin Meier-Schellersheim, and William E. Paul

    PNAS March 16, 2004 101 (11) 3874-3879; https://doi.org/10.1073/pnas.0400606101
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    Interleukin 2 plays a central role in Th2 differentiation

    Javier Cote-Sierra, Gilles Foucras, Liying Guo, Lynda Chiodetti, Howard A. Young, Jane Hu-Li, Jinfang Zhu, and William E. Paul

    PNAS March 16, 2004 101 (11) 3880-3885; https://doi.org/10.1073/pnas.0400339101
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    Identification of a specific self-reactive IgM antibody that initiates intestinal ischemia/reperfusion injury

    Ming Zhang, William G. Austen Jr., Isaac Chiu, Elisabeth M. Alicot, Rachel Hung, Minghe Ma, Nicola Verna, Min Xu, Herbert B. Hechtman, Francis D. Moore Jr., and Michael C. Carroll

    PNAS March 16, 2004 101 (11) 3886-3891; https://doi.org/10.1073/pnas.0400347101
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    T cell immunity using transgenic B lymphocytes

    Mara Gerloni, Marta Rizzi, Paola Castiglioni, and Maurizio Zanetti

    PNAS March 16, 2004 101 (11) 3892-3897; https://doi.org/10.1073/pnas.0400138101
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    The E47 transcription factor negatively regulates CD5 expression during thymocyte development

    Yang Yang, Christopher H. Contag, Dean Felsher, Catherine M. Shachaf, Yuan Cao, Leonard A. Herzenberg, Leonore A. Herzenberg, and James W. Tung

    PNAS March 16, 2004 101 (11) 3898-3902; https://doi.org/10.1073/pnas.0308764101
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    Impaired IgA class switching in APRIL-deficient mice

    Emanuela Castigli, Sumi Scott, Fatma Dedeoglu, Paul Bryce, Haifa Jabara, Atul K. Bhan, Emiko Mizoguchi, and Raif S. Geha

    PNAS March 16, 2004 101 (11) 3903-3908; https://doi.org/10.1073/pnas.0307348101
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    Defective development of splenic and epidermal CD4⁺ dendritic cells in mice deficient for IFN regulatory factor-2

    Eri Ichikawa, Shigeaki Hida, Yoshiki Omatsu, Susumu Shimoyama, Kazuhiko Takahara, Shinichi Miyagawa, Kayo Inaba, and Shinsuke Taki

    PNAS March 16, 2004 101 (11) 3909-3914; https://doi.org/10.1073/pnas.0400610101

• Medical Sciences

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    Acute myeloid leukemia with complex karyotypes and abnormal chromosome 21: Amplification discloses overexpression of APP, ETS2, and ERG genes

    Claudia D. Baldus, Sandya Liyanarachchi, Krzysztof Mrózek, Herbert Auer, Stephan M. Tanner, Martin Guimond, Amy S. Ruppert, Nehad Mohamed, Ramana V. Davuluri, Michael A. Caligiuri, Clara D. Bloomfield, and Albert de la Chapelle

    PNAS March 16, 2004 101 (11) 3915-3920; https://doi.org/10.1073/pnas.0400272101
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    Histone deacetylase inhibitor suberoylanilide hydroxamic acid reduces acute graft-versus-host disease and preserves graft-versus-leukemia effect

    Pavan Reddy, Yoshinobu Maeda, Kevin Hotary, Chen Liu, Leonid L. Reznikov, Charles A. Dinarello, and James L. M. Ferrara

    PNAS March 16, 2004 101 (11) 3921-3926; https://doi.org/10.1073/pnas.0400380101
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    A single amino acid of APOBEC3G controls its species-specific interaction with virion infectivity factor (Vif)

    • From the Cover

    Bärbel Schröfelbauer, Darlene Chen, and Nathaniel R. Landau

    PNAS March 16, 2004 101 (11) 3927-3932; https://doi.org/10.1073/pnas.0307132101

    See companion article:

    • Controlling lentiviruses: Single amino acid changes can determine specificity

      - Mar 16, 2004
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    Topical DNA oligonucleotide therapy reduces UV-induced mutations and photocarcinogenesis in hairless mice

    David A. Goukassian, Elizabeth Helms, Harry van Steeg, Conny van Oostrom, Jag Bhawan, and Barbara A. Gilchrest

    PNAS March 16, 2004 101 (11) 3933-3938; https://doi.org/10.1073/pnas.0306389101
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    β₂-Glycoprotein I binds factor XI and inhibits its activation by thrombin and factor XIIa: Loss of inhibition by clipped β₂-glycoprotein I

    Tong Shi, G. Michael Iverson, Jian C. Qi, Keith A. Cockerill, Matthew D. Linnik, Pamela Konecny, and Steven A. Krilis

    PNAS March 16, 2004 101 (11) 3939-3944; https://doi.org/10.1073/pnas.0400281101

• Microbiology

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    Docking of cytosolic chaperone-substrate complexes at the membrane ATPase during flagellar type III protein export

    Joanne Thomas, Graham P. Stafford, and Colin Hughes

    PNAS March 16, 2004 101 (11) 3945-3950; https://doi.org/10.1073/pnas.0307223101

• Neuroscience

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    Fluorometric measurements of conformational changes in glutamate transporters

    H. Peter Larsson, Anastassios V. Tzingounis, Hans P. Koch, and Michael P. Kavanaugh

    PNAS March 16, 2004 101 (11) 3951-3956; https://doi.org/10.1073/pnas.0306737101
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    Timing of brain-derived neurotrophic factor exposure affects life expectancy of new neurons

    Benjamín Alvarez-Borda, Bhagwattie Haripal, and Fernando Nottebohm

    PNAS March 16, 2004 101 (11) 3957-3961; https://doi.org/10.1073/pnas.0308118101
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    The scaling of frontal cortex in primates and carnivores

    Eliot C. Bush and John M. Allman

    PNAS March 16, 2004 101 (11) 3962-3966; https://doi.org/10.1073/pnas.0305760101
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    GABA-mediated giant depolarizing potentials as coincidence detectors for enhancing synaptic efficacy in the developing hippocampus

    • From the Cover

    Alexander M. Kasyanov, Victoria F. Safiulina, Leon L. Voronin, and Enrico Cherubini

    PNAS March 16, 2004 101 (11) 3967-3972; https://doi.org/10.1073/pnas.0305974101
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    Stress-induced structural remodeling in hippocampus: Prevention by lithium treatment

    Gwendolyn E. Wood, L. Trevor Young, Lawrence P. Reagan, Biao Chen, and Bruce S. McEwen

    PNAS March 16, 2004 101 (11) 3973-3978; https://doi.org/10.1073/pnas.0400208101

• Physiology

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    Estrogen receptors ERα and ERβ in proliferation in the rodent mammary gland

    • Inaugural Article

    Guojun Cheng, Zhang Weihua, Margaret Warner, and Jan-Åke Gustafsson

    PNAS March 16, 2004 101 (11) 3739-3746; https://doi.org/10.1073/pnas.0307864100

    See companion article:

    • Biography of Jan-Åke Gustafsson

      - Mar 16, 2004
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    The quantal nature of Ca²⁺ sparks and in situ operation of the ryanodine receptor array in cardiac cells

    Shi Qiang Wang, Michael D. Stern, Eduardo Ríos, and Heping Cheng

    PNAS March 16, 2004 101 (11) 3979-3984; https://doi.org/10.1073/pnas.0306157101

• Plant Biology

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    CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis

    Fernando Novillo, José M. Alonso, Joseph R. Ecker, and Julio Salinas

    PNAS March 16, 2004 101 (11) 3985-3990; https://doi.org/10.1073/pnas.0303029101