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Table of Contents

November 30, 2004; vol. 101 no. 48

Commentaries

  • You have access
    Is knowing always feeling?
    Alan G. Sanfey and Jonathan D. Cohen
    PNAS November 30, 2004 101 (48) 16709-16710; https://doi.org/10.1073/pnas.0407200101
  • You have access
    Postmenopausal osteoporosis, T cells, and immune dysfunction
    Steven L. Teitelbaum
    PNAS November 30, 2004 101 (48) 16711-16712; https://doi.org/10.1073/pnas.0407335101
  • You have access
    Shifting paradigms: Herbivory and body size in lizards
    Laurie J. Vitt
    PNAS November 30, 2004 101 (48) 16713-16714; https://doi.org/10.1073/pnas.0407439101

    See companion article:

    • Recurrent evolution of herbivory in small, cold-climate lizards: Breaking the ecophysiological rules of reptilian herbivory
      - Nov 18, 2004

Physical Sciences

  • Applied Mathematics

    • You have access
      The organization of orientation and spatial frequency in primary visual cortex
      Lawrence Sirovich and Robert Uglesich
      PNAS November 30, 2004 101 (48) 16941-16946; https://doi.org/10.1073/pnas.0407450101
  • Chemistry

    • You have access
      A small-molecule switch for Golgi sulfotransferases
      • From the Cover
      Christopher L. de Graffenried, Scott T. Laughlin, Jennifer J. Kohler, and Carolyn R. Bertozzi
      PNAS November 30, 2004 101 (48) 16715-16720; https://doi.org/10.1073/pnas.0403681101
    • You have access
      Compound library development guided by protein structure similarity clustering and natural product structure
      Marcus A. Koch, Lars-Oliver Wittenberg, Sudipta Basu, Duraiswamy A. Jeyaraj, Eleni Gourzoulidou, Kerstin Reinecke, Alex Odermatt, and Herbert Waldmann
      PNAS November 30, 2004 101 (48) 16721-16726; https://doi.org/10.1073/pnas.0404719101
    • You have access
      Synthesis of galmic: A nonpeptide galanin receptor agonist
      Susana Conde Ceide, Laurent Trembleau, Gebhard Haberhauer, Laszlo Somogyi, Xiaoying Lu, Tamas Bartfai, and Julius Rebek Jr.
      PNAS November 30, 2004 101 (48) 16727-16732; https://doi.org/10.1073/pnas.0407543101
    • You have access
      Recycling Frank: Spontaneous emergence of homochirality in noncatalytic systems
      Raphaël Plasson, Hugues Bersini, and Auguste Commeyras
      PNAS November 30, 2004 101 (48) 16733-16738; https://doi.org/10.1073/pnas.0405293101
  • Statistics

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      Linkage analysis of ordinal traits for pedigree data
      Rui Feng, James F. Leckman, and Heping Zhang
      PNAS November 30, 2004 101 (48) 16739-16744; https://doi.org/10.1073/pnas.0404623101

Biological Sciences

  • Applied Biological Sciences

    • Open Access
      Evolution of new nonantibody proteins via iterative somatic hypermutation
      Lei Wang, W. Coyt Jackson, Paul A. Steinbach, and Roger Y. Tsien
      PNAS November 30, 2004 101 (48) 16745-16749; https://doi.org/10.1073/pnas.0407752101
  • Biochemistry

    • Open Access
      Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex
      Steven L. Kazmirski, Marjetka Podobnik, Tanya F. Weitze, Mike O'Donnell, and John Kuriyan
      PNAS November 30, 2004 101 (48) 16750-16755; https://doi.org/10.1073/pnas.0407904101
    • You have access
      Evidence that translocation of anthrax toxin's lethal factor is initiated by entry of its N terminus into the protective antigen channel
      Sen Zhang, Alan Finkelstein, and R. John Collier
      PNAS November 30, 2004 101 (48) 16756-16761; https://doi.org/10.1073/pnas.0405754101
    • You have access
      The human Rad9–Rad1–Hus1 checkpoint complex stimulates flap endonuclease 1
      Wensheng Wang, Patrick Brandt, Marie L. Rossi, Laura Lindsey-Boltz, Vladimir Podust, Ellen Fanning, Aziz Sancar, and Robert A. Bambara
      PNAS November 30, 2004 101 (48) 16762-16767; https://doi.org/10.1073/pnas.0407686101
    • You have access
      Inhibition of vascular endothelial growth factor with a sequence-specific hypoxia response element antagonist
      Bogdan Z. Olenyuk, Guo-Jun Zhang, Jeffery M. Klco, Nicholas G. Nickols, William G. Kaelin Jr., and Peter B. Dervan
      PNAS November 30, 2004 101 (48) 16768-16773; https://doi.org/10.1073/pnas.0407617101
    • You have access
      On the mechanism and biology of cytochrome oxidase inhibition by nitric oxide
      Fernando Antunes, Alberto Boveris, and Enrique Cadenas
      PNAS November 30, 2004 101 (48) 16774-16779; https://doi.org/10.1073/pnas.0405368101
  • Biophysics

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      Prediction of the structural motifs of sandwich proteins
      A. S. Fokas, I. M. Gelfand, and A. E. Kister
      PNAS November 30, 2004 101 (48) 16780-16783; https://doi.org/10.1073/pnas.0407570101
    • You have access
      Running on water: Three-dimensional force generation by basilisk lizards
      S. Tonia Hsieh and George V. Lauder
      PNAS November 30, 2004 101 (48) 16784-16788; https://doi.org/10.1073/pnas.0405736101
    • Open Access
      Halogen bonds in biological molecules
      Pascal Auffinger, Franklin A. Hays, Eric Westhof, and P. Shing Ho
      PNAS November 30, 2004 101 (48) 16789-16794; https://doi.org/10.1073/pnas.0407607101
  • Cell Biology

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      Defective lysosomal exocytosis and plasma membrane repair in Chediak–Higashi/beige cells
      • From the Cover
      Chau Huynh, Doris Roth, Diane M. Ward, Jerry Kaplan, and Norma W. Andrews
      PNAS November 30, 2004 101 (48) 16795-16800; https://doi.org/10.1073/pnas.0405905101
    • You have access
      Reversible transdifferentiation of secretory epithelial cells into adipocytes in the mammary gland
      Manrico Morroni, Antonio Giordano, Maria Cristina Zingaretti, Romina Boiani, Rita De Matteis, Barbara B. Kahn, Enzo Nisoli, Cristina Tonello, Catalina Pisoschi, Michele M. Luchetti, Mariella Marelli, and Saverio Cinti
      PNAS November 30, 2004 101 (48) 16801-16806; https://doi.org/10.1073/pnas.0407647101
    • You have access
      Sarcolipin retention in the endoplasmic reticulum depends on its C-terminal RSYQY sequence and its interaction with sarco(endo)plasmic Ca2+-ATPases
      Anthony O. Gramolini, Thomas Kislinger, Michio Asahi, Wenping Li, Andrew Emili, and David H. MacLennan
      PNAS November 30, 2004 101 (48) 16807-16812; https://doi.org/10.1073/pnas.0407815101
    • Open Access
      Bv8 and endocrine gland-derived vascular endothelial growth factor stimulate hematopoiesis and hematopoietic cell mobilization
      Jennifer LeCouter, Constance Zlot, Max Tejada, Franklin Peale, and Napoleone Ferrara
      PNAS November 30, 2004 101 (48) 16813-16818; https://doi.org/10.1073/pnas.0407697101
  • Evolution

    • You have access
      Recurrent evolution of herbivory in small, cold-climate lizards: Breaking the ecophysiological rules of reptilian herbivory
      • From the Cover
      Robert E. Espinoza, John J. Wiens, and C. Richard Tracy
      PNAS November 30, 2004 101 (48) 16819-16824; https://doi.org/10.1073/pnas.0401226101

      See companion article:

      • Shifting paradigms: Herbivory and body size in lizards
        - Nov 22, 2004
    • You have access
      Coding sequences of functioning human genes derived entirely from mobile element sequences
      Roy J. Britten
      PNAS November 30, 2004 101 (48) 16825-16830; https://doi.org/10.1073/pnas.0406985101
  • Genetics

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      dsu functions in a MYO5A-independent pathway to suppress the coat color of dilute mice
      T. Norene O'Sullivan, Xufeng S. Wu, Rivka A. Rachel, Jiang-Dong Huang, Deborah A. Swing, Lydia E. Matesic, John A. Hammer III, Neal G. Copeland, and Nancy A. Jenkins
      PNAS November 30, 2004 101 (48) 16831-16836; https://doi.org/10.1073/pnas.0407339101
    • You have access
      Discovery of functional noncoding elements by digital analysis of chromatin structure
      Peter J. Sabo, Michael Hawrylycz, James C. Wallace, Richard Humbert, Man Yu, Anthony Shafer, Janelle Kawamoto, Robert Hall, Joshua Mack, Michael O. Dorschner, Michael McArthur, and John A. Stamatoyannopoulos
      PNAS November 30, 2004 101 (48) 16837-16842; https://doi.org/10.1073/pnas.0407387101
    • You have access
      Changes in genomewide occupancy of core transcriptional regulators during heat stress
      Sara J. Zanton and B. Franklin Pugh
      PNAS November 30, 2004 101 (48) 16843-16848; https://doi.org/10.1073/pnas.0404988101
    • You have access
      A gene encoding a putative FAD-dependent l-2-hydroxyglutarate dehydrogenase is mutated in l-2-hydroxyglutaric aciduria
      Rim Rzem, Maria Veiga-da-Cunha, Gaëtane Noël, Sophie Goffette, Marie-Cécile Nassogne, Brahim Tabarki, Christina Schöller, Thorsten Marquardt, Miikka Vikkula, and Emile Van Schaftingen
      PNAS November 30, 2004 101 (48) 16849-16854; https://doi.org/10.1073/pnas.0404840101
    • You have access
      GC/AT-content spikes as genomic punctuation marks
      Lingang Zhang, Simon Kasif, Charles R. Cantor, and Natalia E. Broude
      PNAS November 30, 2004 101 (48) 16855-16860; https://doi.org/10.1073/pnas.0407821101
    • You have access
      Differentiation-induced replication-timing changes are restricted to AT-rich/long interspersed nuclear element (LINE)-rich isochores
      Ichiro Hiratani, Amanda Leskovar, and David M. Gilbert
      PNAS November 30, 2004 101 (48) 16861-16866; https://doi.org/10.1073/pnas.0406687101
  • Immunology

    • You have access
      Solution structure of the CD3εδ ectodomain and comparison with CD3εγ as a basis for modeling T cell receptor topology and signaling
      Zhen-Yu J. Sun, Sun Taek Kim, Il Chul Kim, Amr Fahmy, Ellis L. Reinherz, and Gerhard Wagner
      PNAS November 30, 2004 101 (48) 16867-16872; https://doi.org/10.1073/pnas.0407576101
    • You have access
      Human and murine inhibitory natural killer cell receptors transfer from natural killer cells to target cells
      Bruno Vanherberghen, Katja Andersson, Leo M. Carlin, Esther N. M. Nolte-`t Hoen, Geoffrey S. Williams, Petter Höglund, and Daniel M. Davis
      PNAS November 30, 2004 101 (48) 16873-16878; https://doi.org/10.1073/pnas.0406240101
    • You have access
      Activation of the complement system generates antibacterial peptides
      Emma Andersson Nordahl, Victoria Rydengård, Patrik Nyberg, D. Patric Nitsche, Matthias Mörgelin, Martin Malmsten, Lars Björck, and Artur Schmidtchen
      PNAS November 30, 2004 101 (48) 16879-16884; https://doi.org/10.1073/pnas.0406678101
    • You have access
      The molecular program induced in T cells undergoing homeostatic proliferation
      Ananda W. Goldrath, C. John Luckey, Richard Park, Christophe Benoist, and Diane Mathis
      PNAS November 30, 2004 101 (48) 16885-16890; https://doi.org/10.1073/pnas.0407417101
  • Medical Sciences

    • You have access
      Transplanted human bone marrow contributes to vascular endothelium
      Shuguang Jiang, Luke Walker, Michael Afentoulis, Daniel A. Anderson, Linda Jauron-Mills, Christopher L. Corless, and William H. Fleming
      PNAS November 30, 2004 101 (48) 16891-16896; https://doi.org/10.1073/pnas.0404398101
    • You have access
      SMAC/Diablo-dependent apoptosis induced by nonsteroidal antiinflammatory drugs (NSAIDs) in colon cancer cells
      Manu Kohli, Jian Yu, Craig Seaman, Alberto Bardelli, Kenneth W. Kinzler, Bert Vogelstein, Christoph Lengauer, and Lin Zhang
      PNAS November 30, 2004 101 (48) 16897-16902; https://doi.org/10.1073/pnas.0403405101
    • You have access
      Correction of kinetic and stability defects by tetrahydrobiopterin in phenylketonuria patients with certain phenylalanine hydroxylase mutations
      • From the Cover
      Heidi Erlandsen, Angel L. Pey, Alejandra Gámez, Belén Pérez, Lourdes R. Desviat, Cristina Aguado, Richard Koch, Sankar Surendran, Stephen Tyring, Reuben Matalon, Charles R. Scriver, Magdalena Ugarte, Aurora Martínez, and Raymond C. Stevens
      PNAS November 30, 2004 101 (48) 16903-16908; https://doi.org/10.1073/pnas.0407256101
    • You have access
      Bioluminescent imaging of a marking transgene and correction of Fabry mice by neonatal injection of recombinant lentiviral vectors
      Makoto Yoshimitsu, Takeya Sato, Kesheng Tao, Jagdeep S. Walia, Vanessa I. Rasaiah, Gillian T. Sleep, Gary J. Murray, Armando G. Poeppl, John Underwood, Lori West, Roscoe O. Brady, and Jeffrey A. Medin
      PNAS November 30, 2004 101 (48) 16909-16914; https://doi.org/10.1073/pnas.0407572101
    • You have access
      Dynamical resonance can account for seasonality of influenza epidemics
      Jonathan Dushoff, Joshua B. Plotkin, Simon A. Levin, and David J. D. Earn
      PNAS November 30, 2004 101 (48) 16915-16916; https://doi.org/10.1073/pnas.0407293101
  • Microbiology

    • You have access
      Interspecies communication in Streptococcus gordonii–Veillonella atypica biofilms: Signaling in flow conditions requires juxtaposition
      Paul G. Egland, Robert J. Palmer Jr., and Paul E. Kolenbrander
      PNAS November 30, 2004 101 (48) 16917-16922; https://doi.org/10.1073/pnas.0407457101
    • You have access
      Metastability of Helicobacter pylori bab adhesin genes and dynamics in Lewis b antigen binding
      • From the Cover
      Anna Bäckström, Carina Lundberg, Dangeruta Kersulyte, Douglas E. Berg, Thomas Borén, and Anna Arnqvist
      PNAS November 30, 2004 101 (48) 16923-16928; https://doi.org/10.1073/pnas.0404817101
    • Open Access
      Anaerobic growth of Methanosarcina acetivorans C2A on carbon monoxide: An unusual way of life for a methanogenic archaeon
      Michael Rother and William W. Metcalf
      PNAS November 30, 2004 101 (48) 16929-16934; https://doi.org/10.1073/pnas.0407486101

      See companion article:

      • An unconventional pathway for reduction of CO2 to methane in CO-grown Methanosarcina acetivorans revealed by proteomics
        - Nov 13, 2006
  • Neuroscience

    • You have access
      Experimental test of the birdsong error-correction model
      Anthony Leonardo
      PNAS November 30, 2004 101 (48) 16935-16940; https://doi.org/10.1073/pnas.0407870101
    • You have access
      The organization of orientation and spatial frequency in primary visual cortex
      Lawrence Sirovich and Robert Uglesich
      PNAS November 30, 2004 101 (48) 16941-16946; https://doi.org/10.1073/pnas.0407450101
    • You have access
      Perceptual deficits in patients with impaired recognition of biological motion after temporal lobe lesions
      Lucia M. Vaina and Charles G. Gross
      PNAS November 30, 2004 101 (48) 16947-16951; https://doi.org/10.1073/pnas.0407668101
    • Open Access
      Ca2+ activity at GABAB receptors constitutively promotes metabotropic glutamate signaling in the absence of GABA
      Toshihide Tabata, Kenji Araishi, Kouichi Hashimoto, Yuki Hashimotodani, Herman van der Putten, Bernhard Bettler, and Masanobu Kano
      PNAS November 30, 2004 101 (48) 16952-16957; https://doi.org/10.1073/pnas.0405387101
  • Pharmacology

    • You have access
      Differential nitros(yl)ation of blood and tissue constituents during glyceryl trinitrate biotransformation in vivo
      David R. Janero, Nathan S. Bryan, Fumito Saijo, Vijay Dhawan, David J. Schwalb, Michael C. Warren, and Martin Feelisch
      PNAS November 30, 2004 101 (48) 16958-16963; https://doi.org/10.1073/pnas.0406075101
    • You have access
      Function recovery after chemobleaching (FRAC): Evidence for activity silent membrane receptors on cell surface
      Haiyan Sun, Sojin Shikano, Qiaojie Xiong, and Min Li
      PNAS November 30, 2004 101 (48) 16964-16969; https://doi.org/10.1073/pnas.0404178101
  • Physiology

    • You have access
      Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate
      Andrew Y. Gracey, E. Jane Fraser, Weizhong Li, Yongxiang Fang, Ruth R. Taylor, Jane Rogers, Andrew Brass, and Andrew R. Cossins
      PNAS November 30, 2004 101 (48) 16970-16975; https://doi.org/10.1073/pnas.0403627101
  • Plant Biology

    • You have access
      A highly specific l-galactose-1-phosphate phosphatase on the path to ascorbate biosynthesis
      William A. Laing, Sean Bulley, Michele Wright, Janine Cooney, Dwayne Jensen, Di Barraclough, and Elspeth MacRae
      PNAS November 30, 2004 101 (48) 16976-16981; https://doi.org/10.1073/pnas.0407453101

Correction

  • You have access
    Correction for Lai et al., Correction of ATM gene function by aminoglycoside-induced read-through of premature termination codons, PNAS 2004 101:15676-15681
    PNAS November 30, 2004 101 (48) 16982; https://doi.org/10.1073/pnas.0408040101
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