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Table of Contents

December 07, 2004; vol. 101 no. 49

Commentaries

  • You have access
    Microbial ecology comes of age and joins the general ecology community
    Bill Costerton
    PNAS December 7, 2004 101 (49) 16983-16984; https://doi.org/10.1073/pnas.0407886101
  • You have access
    Fusion-protein truncation provides new insights into leukemogenesis
    Jay L. Hess and Bruce A. Hug
    PNAS December 7, 2004 101 (49) 16985-16986; https://doi.org/10.1073/pnas.0407898101

    See companion article:

    • Deletion of an AML1-ETO C-terminal NcoR/SMRT-interacting region strongly induces leukemia development
      - Nov 29, 2004

Physical Sciences

  • Applied Physical Sciences

    • Open Access
      Use of coherent control methods through scattering biological tissue to achieve functional imaging
      Johanna M. Dela Cruz, Igor Pastirk, Matthew Comstock, Vadim V. Lozovoy, and Marcos Dantus
      PNAS December 7, 2004 101 (49) 16996-17001; https://doi.org/10.1073/pnas.0407733101
  • Chemistry

    • You have access
      Water clusters in nonpolar cavities
      Subramanian Vaitheeswaran, Hao Yin, Jayendran C. Rasaiah, and Gerhard Hummer
      PNAS December 7, 2004 101 (49) 17002-17005; https://doi.org/10.1073/pnas.0407968101
  • Computer Sciences

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      A digital technique for art authentication
      Siwei Lyu, Daniel Rockmore, and Hany Farid
      PNAS December 7, 2004 101 (49) 17006-17010; https://doi.org/10.1073/pnas.0406398101
  • Engineering

    • You have access
      Single-chip mechatronic microsystem for surface imaging and force response studies
      Sadik Hafizovic, Diego Barrettino, Tormod Volden, Jan Sedivy, Kay-Uwe Kirstein, Oliver Brand, and Andreas Hierlemann
      PNAS December 7, 2004 101 (49) 17011-17015; https://doi.org/10.1073/pnas.0405725101
  • Mathematics

    • You have access
      Combinatorics of traces of Hecke operators
      Sharon Frechette, Ken Ono, and Matthew Papanikolas
      PNAS December 7, 2004 101 (49) 17016-17020; https://doi.org/10.1073/pnas.0407223101

Biological Sciences

  • Anthropology

    • You have access
      Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid–cercopithecoid divergence
      Michael E. Steiper, Nathan M. Young, and Tika Y. Sukarna
      PNAS December 7, 2004 101 (49) 17021-17026; https://doi.org/10.1073/pnas.0407270101
  • Biochemistry

    • You have access
      Biography of Jennifer A. Doudna
      • Inaugural Article
      Melissa Marino
      PNAS December 7, 2004 101 (49) 16987-16989; https://doi.org/10.1073/pnas.0408147101

      See companion article:

      • Coordinated assembly of human translation initiation complexes by the hepatitis C virus internal ribosome entry site RNA
        - Nov 24, 2004
    • Open Access
      Coordinated assembly of human translation initiation complexes by the hepatitis C virus internal ribosome entry site RNA
      • Inaugural Article
      Hong Ji, Christopher S. Fraser, Yonghao Yu, Julie Leary, and Jennifer A. Doudna
      PNAS December 7, 2004 101 (49) 16990-16995; https://doi.org/10.1073/pnas.0407402101

      See companion article:

      • Biography of Jennifer A. Doudna
        - Dec 01, 2004
    • You have access
      The VASP tetramerization domain is a right-handed coiled coil based on a 15-residue repeat
      Karin Kühnel, Thomas Jarchau, Eva Wolf, Ilme Schlichting, Ulrich Walter, Alfred Wittinghofer, and Sergei V. Strelkov
      PNAS December 7, 2004 101 (49) 17027-17032; https://doi.org/10.1073/pnas.0403069101
    • Open Access
      Printed covalent glycan array for ligand profiling of diverse glycan binding proteins
      Ola Blixt, Steve Head, Tony Mondala, Christopher Scanlan, Margaret E. Huflejt, Richard Alvarez, Marian C. Bryan, Fabio Fazio, Daniel Calarese, James Stevens, Nahid Razi, David J. Stevens, John J. Skehel, Irma van Die, Dennis R. Burton, Ian A. Wilson, Richard Cummings, Nicolai Bovin, Chi-Huey Wong, and James C. Paulson
      PNAS December 7, 2004 101 (49) 17033-17038; https://doi.org/10.1073/pnas.0407902101
    • You have access
      Plasma proteome of severe acute respiratory syndrome analyzed by two-dimensional gel electrophoresis and mass spectrometry
      Jenn-Han Chen, Yu-Wang Chang, Chen-Wen Yao, Tzong-Shi Chiueh, Su-Chin Huang, Ko-Yi Chien, An Chen, Feng-Yee Chang, Chi-Huey Wong, and Yu-Ju Chen
      PNAS December 7, 2004 101 (49) 17039-17044; https://doi.org/10.1073/pnas.0407992101
    • You have access
      Glycine as a d-amino acid surrogate in the K+-selectivity filter
      Francis I. Valiyaveetil, Matthew Sekedat, Roderick MacKinnon, and Tom W. Muir
      PNAS December 7, 2004 101 (49) 17045-17049; https://doi.org/10.1073/pnas.0407820101
    • You have access
      Processing of Notch and amyloid precursor protein by γ-secretase is spatially distinct
      Leonid Tarassishin, Ye Ingrid Yin, Bhramdeo Bassit, and Yue-Ming Li
      PNAS December 7, 2004 101 (49) 17050-17055; https://doi.org/10.1073/pnas.0408007101
    • You have access
      Strand invasion promoted by recombination protein β of coliphage λ
      Nataliya Rybalchenko, Efim I. Golub, Baoyuan Bi, and Charles M. Radding
      PNAS December 7, 2004 101 (49) 17056-17060; https://doi.org/10.1073/pnas.0408046101
    • You have access
      Inorganic polyphosphate in Bacillus cereus: Motility, biofilm formation, and sporulation
      Xiaobing Shi, Narayana N. Rao, and Arthur Kornberg
      PNAS December 7, 2004 101 (49) 17061-17065; https://doi.org/10.1073/pnas.0407787101
  • Biophysics

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      Phospholipid bilayer surface configuration probed quantitatively by 31P field-cycling NMR
      Mary F. Roberts and Alfred G. Redfield
      PNAS December 7, 2004 101 (49) 17066-17071; https://doi.org/10.1073/pnas.0407565101
    • You have access
      Single-cell FRET imaging of phosphatase activity in the Escherichia coli chemotaxis system
      Ady Vaknin and Howard C. Berg
      PNAS December 7, 2004 101 (49) 17072-17077; https://doi.org/10.1073/pnas.0407812101
    • You have access
      The high- and low-affinity receptor binding sites of growth hormone are allosterically coupled
      Scott T. R. Walsh, Juliesta E. Sylvester, and Anthony A. Kossiakoff
      PNAS December 7, 2004 101 (49) 17078-17083; https://doi.org/10.1073/pnas.0403336101
    • You have access
      Structural basis of activity and allosteric control of diguanylate cyclase
      Carmen Chan, Ralf Paul, Dietrich Samoray, Nicolas C. Amiot, Bernd Giese, Urs Jenal, and Tilman Schirmer
      PNAS December 7, 2004 101 (49) 17084-17089; https://doi.org/10.1073/pnas.0406134101
    • You have access
      The mechanism of ammonia transport based on the crystal structure of AmtB of Escherichia coli
      Lei Zheng, Dirk Kostrewa, Simon Bernèche, Fritz K. Winkler, and Xiao-Dan Li
      PNAS December 7, 2004 101 (49) 17090-17095; https://doi.org/10.1073/pnas.0406475101
    • You have access
      Cooperative extraction of membrane nanotubes by molecular motors
      • From the Cover
      Cécile Leduc, Otger Campàs, Konstantin B. Zeldovich, Aurélien Roux, Pascale Jolimaitre, Line Bourel-Bonnet, Bruno Goud, Jean-François Joanny, Patricia Bassereau, and Jacques Prost
      PNAS December 7, 2004 101 (49) 17096-17101; https://doi.org/10.1073/pnas.0406598101
    • Open Access
      Genetic networks with canalyzing Boolean rules are always stable
      Stuart Kauffman, Carsten Peterson, Björn Samuelsson, and Carl Troein
      PNAS December 7, 2004 101 (49) 17102-17107; https://doi.org/10.1073/pnas.0407783101
  • Cell Biology

    • You have access
      A requirement for breast-cancer-associated gene 1 (BRCA1) in the spindle checkpoint
      Rui-Hong Wang, Hongtao Yu, and Chu-Xia Deng
      PNAS December 7, 2004 101 (49) 17108-17113; https://doi.org/10.1073/pnas.0407585101
    • Open Access
      Imaging of receptor trafficking by using α-bungarotoxin-binding-site-tagged receptors
      • From the Cover
      Yoko Sekine-Aizawa and Richard L. Huganir
      PNAS December 7, 2004 101 (49) 17114-17119; https://doi.org/10.1073/pnas.0407563101
    • You have access
      Identification and modulation of a caveolae-dependent signal pathway that regulates plasminogen activator inhibitor-1 in insulin-resistant adipocytes
      Joshi Venugopal, Kazuhiko Hanashiro, Zhong-Zhou Yang, and Yoshikuni Nagamine
      PNAS December 7, 2004 101 (49) 17120-17125; https://doi.org/10.1073/pnas.0405278101
    • Open Access
      Striatin assembles a membrane signaling complex necessary for rapid, nongenomic activation of endothelial NO synthase by estrogen receptor α
      Qing Lu, David C. Pallas, Howard K. Surks, Wendy E. Baur, Michael E. Mendelsohn, and Richard H. Karas
      PNAS December 7, 2004 101 (49) 17126-17131; https://doi.org/10.1073/pnas.0407492101
  • Developmental Biology

    • You have access
      Restricted inactivation of serum response factor to the cardiovascular system
      Joseph M. Miano, Narendrakumar Ramanan, Mary A. Georger, Karen L. de Mesy Bentley, Rachael L. Emerson, Robert O. Balza Jr., Qi Xiao, Hartmut Weiler, David D. Ginty, and Ravi P. Misra
      PNAS December 7, 2004 101 (49) 17132-17137; https://doi.org/10.1073/pnas.0406041101
    • You have access
      ErbB2 is required for ductal morphogenesis of the mammary gland
      Amy J. Jackson-Fisher, Gary Bellinger, Rajani Ramabhadran, Jacqueline K. Morris, Kuo-Fen Lee, and David F. Stern
      PNAS December 7, 2004 101 (49) 17138-17143; https://doi.org/10.1073/pnas.0407057101
    • You have access
      Tyrosine phosphorylation sites on FRS2α responsible for Shp2 recruitment are critical for induction of lens and retina
      N. Gotoh, M. Ito, S. Yamamoto, I. Yoshino, N. Song, Y. Wang, I. Lax, J. Schlessinger, M. Shibuya, and R. A. Lang
      PNAS December 7, 2004 101 (49) 17144-17149; https://doi.org/10.1073/pnas.0407577101
  • Ecology

    • You have access
      Adapting to an invasive species: Toxic cane toads induce morphological change in Australian snakes
      Ben L. Phillips and Richard Shine
      PNAS December 7, 2004 101 (49) 17150-17155; https://doi.org/10.1073/pnas.0406440101
  • Evolution

    • Open Access
      Highly conserved upstream sequences for transcription factor genes and implications for the regulatory network
      Hisakazu Iwama and Takashi Gojobori
      PNAS December 7, 2004 101 (49) 17156-17161; https://doi.org/10.1073/pnas.0407670101
  • Genetics

    • Open Access
      Phenotypic differences between Salmonella and Escherichia coli resulting from the disparate regulation of homologous genes
      Mollie D. Winfield and Eduardo A. Groisman
      PNAS December 7, 2004 101 (49) 17162-17167; https://doi.org/10.1073/pnas.0406038101
  • Immunology

    • You have access
      Structural basis for peptidoglycan binding by peptidoglycan recognition proteins
      Rongjin Guan, Abhijit Roychowdhury, Brian Ember, Sanjay Kumar, Geert-Jan Boons, and Roy A. Mariuzza
      PNAS December 7, 2004 101 (49) 17168-17173; https://doi.org/10.1073/pnas.0407856101
    • Open Access
      Costimulatory B7-H1 in renal cell carcinoma patients: Indicator of tumor aggressiveness and potential therapeutic target
      R. Houston Thompson, Michael D. Gillett, John C. Cheville, Christine M. Lohse, Haidong Dong, W. Scott Webster, Kent G. Krejci, John R. Lobo, Shomik Sengupta, Lieping Chen, Horst Zincke, Michael L. Blute, Scott E. Strome, Bradley C. Leibovich, and Eugene D. Kwon
      PNAS December 7, 2004 101 (49) 17174-17179; https://doi.org/10.1073/pnas.0406351101
    • You have access
      Functional regulatory immune responses against human cartilage glycoprotein-39 in health vs. proinflammatory responses in rheumatoid arthritis
      Jolanda H. M. van Bilsen, Henrike van Dongen, Leroy R. Lard, Ellen I. H. van der Voort, Diënne G. Elferink, Aleida M. Bakker, André M. M. Miltenburg, Tom W. J. Huizinga, René R. P. de Vries, and René E. M. Toes
      PNAS December 7, 2004 101 (49) 17180-17185; https://doi.org/10.1073/pnas.0407704101
  • Medical Sciences

    • You have access
      Deletion of an AML1-ETO C-terminal NcoR/SMRT-interacting region strongly induces leukemia development
      • From the Cover
      Ming Yan, Sebastien A. Burel, Luke F. Peterson, Eiki Kanbe, Hiromi Iwasaki, Anita Boyapati, Robert Hines, Koichi Akashi, and Dong-Er Zhang
      PNAS December 7, 2004 101 (49) 17186-17191; https://doi.org/10.1073/pnas.0406702101

      See companion article:

      • Fusion-protein truncation provides new insights into leukemogenesis
        - Nov 30, 2004
    • You have access
      Critical roles for collagenase-3 (Mmp13) in development of growth plate cartilage and in endochondral ossification
      Masaki Inada, Yingmin Wang, Michael H. Byrne, Mahboob U. Rahman, Chisato Miyaura, Carlos López-Otín, and Stephen M. Krane
      PNAS December 7, 2004 101 (49) 17192-17197; https://doi.org/10.1073/pnas.0407788101
    • You have access
      Activating Met mutations produce unique tumor profiles in mice with selective duplication of the mutant allele
      Carrie Graveel, Yanli Su, Julie Koeman, Ling-Mei Wang, Lino Tessarollo, Michele Fiscella, Carmen Birchmeier, Pamela Swiatek, Roderick Bronson, and George Vande Woude
      PNAS December 7, 2004 101 (49) 17198-17203; https://doi.org/10.1073/pnas.0407651101
    • You have access
      A critical role for p27kip1 gene dosage in a mouse model of prostate carcinogenesis
      Hui Gao, Xuesong Ouyang, Whitney Banach-Petrosky, Alexander D. Borowsky, Yong Lin, Minjung Kim, Hansol Lee, Weichung-Joseph Shih, Robert D. Cardiff, Michael M. Shen, and Cory Abate-Shen
      PNAS December 7, 2004 101 (49) 17204-17209; https://doi.org/10.1073/pnas.0407693101
    • Open Access
      Combinatorial antibody libraries from cancer patients yield ligand-mimetic Arg-Gly-Asp-containing immunoglobulins that inhibit breast cancer metastasis
      Brunhilde Felding-Habermann, Richard A. Lerner, Antonietta Lillo, Shufei Zhuang, Martin R. Weber, Sandra Arrues, Changshou Gao, Shenlan Mao, Alan Saven, and Kim D. Janda
      PNAS December 7, 2004 101 (49) 17210-17215; https://doi.org/10.1073/pnas.0407869101
    • You have access
      Liver-targeted disruption of Apc in mice activates β-catenin signaling and leads to hepatocellular carcinomas
      S. Colnot, T. Decaens, M. Niwa-Kawakita, C. Godard, G. Hamard, A. Kahn, M. Giovannini, and C. Perret
      PNAS December 7, 2004 101 (49) 17216-17221; https://doi.org/10.1073/pnas.0404761101
    • You have access
      Human Rhesus-associated glycoprotein mediates facilitated transport of NH3 into red blood cells
      Pierre Ripoche, Olivier Bertrand, Pierre Gane, Connie Birkenmeier, Yves Colin, and Jean-Pierre Cartron
      PNAS December 7, 2004 101 (49) 17222-17227; https://doi.org/10.1073/pnas.0403704101
  • Microbiology

    • You have access
      Agrobacterium VirB10, an ATP energy sensor required for type IV secretion
      Eric Cascales and Peter J. Christie
      PNAS December 7, 2004 101 (49) 17228-17233; https://doi.org/10.1073/pnas.0405843101
    • You have access
      Human cytomegalovirus immediate-early 1 protein facilitates viral replication by antagonizing histone deacetylation
      Michael Nevels, Christina Paulus, and Thomas Shenk
      PNAS December 7, 2004 101 (49) 17234-17239; https://doi.org/10.1073/pnas.0407933101
    • You have access
      RNA interference acts as a natural antiviral response to O'nyong-nyong virus (Alphavirus; Togaviridae) infection of Anopheles gambiae
      • From the Cover
      Kimberly M. Keene, Brian D. Foy, Irma Sanchez-Vargas, Barry J. Beaty, Carol D. Blair, and Ken E. Olson
      PNAS December 7, 2004 101 (49) 17240-17245; https://doi.org/10.1073/pnas.0406983101
    • Open Access
      EST-based genome-wide gene inactivation identifies ARAP3 as a host protein affecting cellular susceptibility to anthrax toxin
      Quan Lu, Wensheng Wei, Paul E. Kowalski, Annie C. Y. Chang, and Stanley N. Cohen
      PNAS December 7, 2004 101 (49) 17246-17251; https://doi.org/10.1073/pnas.0407794101
    • You have access
      Random mutagenesis of the gene encoding a viral ligand for multiple cell entry receptors to obtain viral mutants altered for receptor usage
      Miri Yoon and Patricia G. Spear
      PNAS December 7, 2004 101 (49) 17252-17257; https://doi.org/10.1073/pnas.0407892101
    • You have access
      A rare genotype of Cryptococcus gattii caused the cryptococcosis outbreak on Vancouver Island (British Columbia, Canada)
      S. E. Kidd, F. Hagen, R. L. Tscharke, M. Huynh, K. H. Bartlett, M. Fyfe, L. MacDougall, T. Boekhout, K. J. Kwon-Chung, and W. Meyer
      PNAS December 7, 2004 101 (49) 17258-17263; https://doi.org/10.1073/pnas.0402981101
    • You have access
      The V proteins of paramyxoviruses bind the IFN-inducible RNA helicase, mda-5, and inhibit its activation of the IFN-β promoter
      J. Andrejeva, K. S. Childs, D. F. Young, T. S. Carlos, N. Stock, S. Goodbourn, and R. E. Randall
      PNAS December 7, 2004 101 (49) 17264-17269; https://doi.org/10.1073/pnas.0407639101
  • Neuroscience

    • You have access
      Neurochemical and behavioral consequences of widespread gene knockdown in the adult mouse brain by using nonviral RNA interference
      Deepak R. Thakker, Francois Natt, Dieter Hüsken, Rainer Maier, Matthias Müller, Herman van der Putten, Daniel Hoyer, and John F. Cryan
      PNAS December 7, 2004 101 (49) 17270-17275; https://doi.org/10.1073/pnas.0406214101
    • You have access
      slo K+ channel gene regulation mediates rapid drug tolerance
      Alfredo Ghezzi, Yazan M. Al-Hasan, Leo E. Larios, Rudolf A. Bohm, and Nigel S. Atkinson
      PNAS December 7, 2004 101 (49) 17276-17281; https://doi.org/10.1073/pnas.0405584101
    • You have access
      7α-Hydroxypregnenolone acts as a neuronal activator to stimulate locomotor activity of breeding newts by means of the dopaminergic system
      Masahiro Matsunaga, Kazuyoshi Ukena, Etienne-Emile Baulieu, and Kazuyoshi Tsutsui
      PNAS December 7, 2004 101 (49) 17282-17287; https://doi.org/10.1073/pnas.0407176101
    • You have access
      Neural synchrony indexes disordered perception and cognition in schizophrenia
      Kevin M. Spencer, Paul G. Nestor, Ruth Perlmutter, Margaret A. Niznikiewicz, Meredith C. Klump, Melissa Frumin, Martha E. Shenton, and Robert W. McCarley
      PNAS December 7, 2004 101 (49) 17288-17293; https://doi.org/10.1073/pnas.0406074101
  • Physiology

    • You have access
      Targeted disruption of luteinizing hormone β-subunit leads to hypogonadism, defects in gonadal steroidogenesis, and infertility
      Xiaoping Ma, Yanlan Dong, Martin M. Matzuk, and T. Rajendra Kumar
      PNAS December 7, 2004 101 (49) 17294-17299; https://doi.org/10.1073/pnas.0404743101
    • Open Access
      Critical roles of the guanylyl cyclase B receptor in endochondral ossification and development of female reproductive organs
      Naohisa Tamura, Lynda K. Doolittle, Robert E. Hammer, John M. Shelton, James A. Richardson, and David L. Garbers
      PNAS December 7, 2004 101 (49) 17300-17305; https://doi.org/10.1073/pnas.0407894101
  • Plant Biology

    • You have access
      SRK2C, a SNF1-related protein kinase 2, improves drought tolerance by controlling stress-responsive gene expression in Arabidopsis thaliana
      Taishi Umezawa, Riichiro Yoshida, Kyonoshin Maruyama, Kazuko Yamaguchi-Shinozaki, and Kazuo Shinozaki
      PNAS December 7, 2004 101 (49) 17306-17311; https://doi.org/10.1073/pnas.0407758101
  • Psychology

    • Open Access
      Accelerated telomere shortening in response to life stress
      • From the Cover
      Elissa S. Epel, Elizabeth H. Blackburn, Jue Lin, Firdaus S. Dhabhar, Nancy E. Adler, Jason D. Morrow, and Richard M. Cawthon
      PNAS December 7, 2004 101 (49) 17312-17315; https://doi.org/10.1073/pnas.0407162101
    • Open Access
      Social supports and serotonin transporter gene moderate depression in maltreated children
      Joan Kaufman, Bao-Zhu Yang, Heather Douglas-Palumberi, Shadi Houshyar, Deborah Lipschitz, John H. Krystal, and Joel Gelernter
      PNAS December 7, 2004 101 (49) 17316-17321; https://doi.org/10.1073/pnas.0404376101

Correction

  • You have access
    Correction for Finazzi et al., A zeaxanthin-independent nonphotochemical quenching mechanism localized in the photosystem II core complex, PNAS 2004 101:12375-12380
    PNAS December 7, 2004 101 (49) 17322; https://doi.org/10.1073/pnas.0408160101
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Proceedings of the National Academy of Sciences of the United States of America: 101 (49)
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