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Table of Contents

May 31, 2005; vol. 102 no. 22

In This Issue

  • You have access
    This Week in PNAS
    PNAS May 31, 2005 102 (22) 7777-7778; https://doi.org/10.1073/iti2205102

    See companion article:

    • An alternative strategy for sustainable pest resistance in genetically enhanced crops
      - May 20, 2005
    • Deep history impacts present-day ecology and biodiversity
      - May 02, 2005
    • No association between microsomal triglyceride transfer protein (MTP) haplotype and longevity in humans
      - May 23, 2005
    • Differential adhesion of amino acids to inorganic surfaces
      - May 18, 2005
    • Cell-replacement therapy for diabetes: Generating functional insulin-producing tissue from adult human liver cells
      - May 17, 2005

Commentaries

  • You have access
    Autophagy and intracellular surveillance: Modulating MHC class II antigen presentation with stress
    Victoria L. Crotzer and Janice S. Blum
    PNAS May 31, 2005 102 (22) 7779-7780; https://doi.org/10.1073/pnas.0503088102

    See companion article:

    • Autophagy promotes MHC class II presentation of peptides from intracellular source proteins
      - May 13, 2005
  • You have access
    Molecular engineering human hepatocytes into pancreatic beta cells for diabetes therapy
    Irene Cozar-Castellano and Andrew F. Stewart
    PNAS May 31, 2005 102 (22) 7781-7782; https://doi.org/10.1073/pnas.0503261102

    See companion article:

    • Cell-replacement therapy for diabetes: Generating functional insulin-producing tissue from adult human liver cells
      - May 17, 2005

PNAS Classics

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    The sources of Schwinger's Green's functions
    • Classic
    Silvan S. Schweber
    PNAS May 31, 2005 102 (22) 7783-7788; https://doi.org/10.1073/pnas.0405167101

Perspective

  • You have access
    The dilemma of attribution
    H. David Politzer
    PNAS May 31, 2005 102 (22) 7789-7793; https://doi.org/10.1073/pnas.0501644102

Physical Sciences

  • Applied Mathematics

    • You have access
      The worldwide air transportation network: Anomalous centrality, community structure, and cities' global roles
      • From the Cover
      R. Guimerà, S. Mossa, A. Turtschi, and L. A. N. Amaral
      PNAS May 31, 2005 102 (22) 7794-7799; https://doi.org/10.1073/pnas.0407994102
  • Applied Physical Sciences

    • You have access
      Optical routing and sensing with nanowire assemblies
      Donald J. Sirbuly, Matt Law, Peter Pauzauskie, Haoquan Yan, Alex V. Maslov, Kelly Knutsen, Cun-Zheng Ning, Richard J. Saykally, and Peidong Yang
      PNAS May 31, 2005 102 (22) 7800-7805; https://doi.org/10.1073/pnas.0408641102
  • Physics

    • You have access
      Gain-swept superradiance applied to the stand-off detection of trace impurities in the atmosphere
      V. Kocharovsky, S. Cameron, K. Lehmann, R. Lucht, R. Miles, Y. Rostovtsev, W. Warren, G. R. Welch, and M. O. Scully
      PNAS May 31, 2005 102 (22) 7806-7811; https://doi.org/10.1073/pnas.0500534102
  • Statistics

    • You have access
      Subtree power analysis and species selection for comparative genomics
      Jon D. McAuliffe, Michael I. Jordan, and Lior Pachter
      PNAS May 31, 2005 102 (22) 7900-7905; https://doi.org/10.1073/pnas.0502790102

Biological Sciences

  • Agricultural Sciences

    • You have access
      An alternative strategy for sustainable pest resistance in genetically enhanced crops
      Luke Mehlo, Daphrose Gahakwa, Pham Trung Nghia, Nguyen Thi Loc, Teresa Capell, John A. Gatehouse, Angharad M. R. Gatehouse, and Paul Christou
      PNAS May 31, 2005 102 (22) 7812-7816; https://doi.org/10.1073/pnas.0502871102

      See companion article:

      • This Week in PNAS
        - May 31, 2005
  • Applied Biological Sciences

    • You have access
      Differential adhesion of amino acids to inorganic surfaces
      R. L. Willett, K. W. Baldwin, K. W. West, and L. N. Pfeiffer
      PNAS May 31, 2005 102 (22) 7817-7822; https://doi.org/10.1073/pnas.0408565102

      See companion article:

      • This Week in PNAS
        - May 31, 2005
  • Biochemistry

    • You have access
      DksA potentiates direct activation of amino acid promoters by ppGpp
      • From the Cover
      Brian J. Paul, Melanie B. Berkmen, and Richard L. Gourse
      PNAS May 31, 2005 102 (22) 7823-7828; https://doi.org/10.1073/pnas.0501170102
  • Biophysics

    • You have access
      A quantum mechanical polarizable force field for biomolecular interactions
      A. G. Donchev, V. D. Ozrin, M. V. Subbotin, O. V. Tarasov, and V. I. Tarasov
      PNAS May 31, 2005 102 (22) 7829-7834; https://doi.org/10.1073/pnas.0502962102
    • You have access
      Theoretical model of prion propagation: A misfolded protein induces misfolding
      Edyta Małolepsza, Michał Boniecki, Andrzej Kolinski, and Lucjan Piela
      PNAS May 31, 2005 102 (22) 7835-7840; https://doi.org/10.1073/pnas.0409389102
    • You have access
      Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli
      G. Balázsi, A.-L. Barabási, and Z. N. Oltvai
      PNAS May 31, 2005 102 (22) 7841-7846; https://doi.org/10.1073/pnas.0500365102
    • You have access
      Stress release drives symmetry breaking for actin-based movement
      Jasper van der Gucht, Ewa Paluch, Julie Plastino, and Cécile Sykes
      PNAS May 31, 2005 102 (22) 7847-7852; https://doi.org/10.1073/pnas.0502121102
  • Cell Biology

    • You have access
      A vital role of tubulin-tyrosine-ligase for neuronal organization
      Christian Erck, Leticia Peris, Annie Andrieux, Claire Meissirel, Achim D. Gruber, Muriel Vernet, Annie Schweitzer, Yasmina Saoudi, Hervé Pointu, Christophe Bosc, Paul A. Salin, Didier Job, and Juergen Wehland
      PNAS May 31, 2005 102 (22) 7853-7858; https://doi.org/10.1073/pnas.0409626102
    • You have access
      Targeted expression of the inositol 1,4,5-triphosphate receptor (IP3R) ligand-binding domain releases Ca2+ via endogenous IP3R channels
      Péter Várnai, András Balla, László Hunyady, and Tamas Balla
      PNAS May 31, 2005 102 (22) 7859-7864; https://doi.org/10.1073/pnas.0407535102
  • Developmental Biology

    • You have access
      Epigenetic programming in the preimplantation rat embryo is disrupted by chronic paternal cyclophosphamide exposure
      Tara S. Barton, Bernard Robaire, and Barbara F. Hales
      PNAS May 31, 2005 102 (22) 7865-7870; https://doi.org/10.1073/pnas.0501200102
  • Ecology

    • You have access
      Source pool geometry and the assembly of continental avifaunas
      Gary R. Graves and Carsten Rahbek
      PNAS May 31, 2005 102 (22) 7871-7876; https://doi.org/10.1073/pnas.0500424102
  • Evolution

    • You have access
      Deep history impacts present-day ecology and biodiversity
      • From the Cover
      Laurie J. Vitt and Eric R. Pianka
      PNAS May 31, 2005 102 (22) 7877-7881; https://doi.org/10.1073/pnas.0501104102

      See companion article:

      • This Week in PNAS
        - May 31, 2005
      • Historical influences on community ecology
        - Jun 06, 2005
    • You have access
      Simultaneous inference of selection and population growth from patterns of variation in the human genome
      Scott H. Williamson, Ryan Hernandez, Adi Fledel-Alon, Lan Zhu, Rasmus Nielsen, and Carlos D. Bustamante
      PNAS May 31, 2005 102 (22) 7882-7887; https://doi.org/10.1073/pnas.0502300102
  • Genetics

    • You have access
      Establishing genetic transformation for comparative developmental studies in the crustacean Parhyale hawaiensis
      Anastasios Pavlopoulos and Michalis Averof
      PNAS May 31, 2005 102 (22) 7888-7893; https://doi.org/10.1073/pnas.0501101102
    • You have access
      A missense mutation in the previously undescribed gene Tmhs underlies deafness in hurry-scurry (hscy) mice
      Chantal M. Longo-Guess, Leona H. Gagnon, Susan A. Cook, Jian Wu, Qing Y. Zheng, and Kenneth R. Johnson
      PNAS May 31, 2005 102 (22) 7894-7899; https://doi.org/10.1073/pnas.0500760102
    • You have access
      Subtree power analysis and species selection for comparative genomics
      Jon D. McAuliffe, Michael I. Jordan, and Lior Pachter
      PNAS May 31, 2005 102 (22) 7900-7905; https://doi.org/10.1073/pnas.0502790102
    • You have access
      No association between microsomal triglyceride transfer protein (MTP) haplotype and longevity in humans
      Almut Nebel, Peter J. P. Croucher, Rieke Stiegeler, Susanna Nikolaus, Michael Krawczak, and Stefan Schreiber
      PNAS May 31, 2005 102 (22) 7906-7909; https://doi.org/10.1073/pnas.0408670102

      See companion article:

      • This Week in PNAS
        - May 31, 2005
  • Immunology

    • You have access
      Involvement of clathrin and AP-2 in the trafficking of MHC class II molecules to antigen-processing compartments
      Peter J. McCormick, José A. Martina, and Juan S. Bonifacino
      PNAS May 31, 2005 102 (22) 7910-7915; https://doi.org/10.1073/pnas.0502206102
    • You have access
      Characterization of subsets of CD4+ memory T cells reveals early branched pathways of T cell differentiation in humans
      Kaimei Song, Ronald L. Rabin, Brenna J. Hill, Stephen C. De Rosa, Stephen P. Perfetto, Hongwei H. Zhang, John F. Foley, Jeffrey S. Reiner, Jie Liu, Joseph J. Mattapallil, Daniel C. Douek, Mario Roederer, and Joshua M. Farber
      PNAS May 31, 2005 102 (22) 7916-7921; https://doi.org/10.1073/pnas.0409720102
    • You have access
      Autophagy promotes MHC class II presentation of peptides from intracellular source proteins
      • From the Cover
      Jörn Dengjel, Oliver Schoor, Rainer Fischer, Michael Reich, Marianne Kraus, Margret Müller, Katharina Kreymborg, Florian Altenberend, Jens Brandenburg, Hubert Kalbacher, Roland Brock, Christoph Driessen, Hans-Georg Rammensee, and Stefan Stevanovic
      PNAS May 31, 2005 102 (22) 7922-7927; https://doi.org/10.1073/pnas.0501190102

      See companion article:

      • Autophagy and intracellular surveillance: Modulating MHC class II antigen presentation with stress
        - May 23, 2005
    • You have access
      Activated antigen-presenting cells select and present chemically modified peptides recognized by unique CD4 T cells
      Jeremy Herzog, Yoichi Maekawa, Thomas P. Cirrito, Beverly S. Illian, and Emil R. Unanue
      PNAS May 31, 2005 102 (22) 7928-7933; https://doi.org/10.1073/pnas.0502255102
    • You have access
      A critical role of T cell antigen receptor-transduced MHC class I-restricted helper T cells in tumor protection
      Emma C. Morris, Aristotle Tsallios, Gavin M. Bendle, Shao-an Xue, and Hans J. Stauss
      PNAS May 31, 2005 102 (22) 7934-7939; https://doi.org/10.1073/pnas.0500357102
    • You have access
      Identification of cancer/testis-antigen genes by massively parallel signature sequencing
      Yao-Tseng Chen, Matthew J. Scanlan, Charis A. Venditti, Ramon Chua, Gregory Theiler, Brian J. Stevenson, Christian Iseli, Ali O. Gure, Tom Vasicek, Robert L. Strausberg, C. Victor Jongeneel, Lloyd J. Old, and Andrew J. G. Simpson
      PNAS May 31, 2005 102 (22) 7940-7945; https://doi.org/10.1073/pnas.0502583102
  • Medical Sciences

    • You have access
      Cell membrane-specific epitopes on CD30: Potentially superior targets for immunotherapy
      Satoshi Nagata, Tomoko Ise, Masanori Onda, Kazuyasu Nakamura, Mitchell Ho, Andrew Raubitschek, and Ira H. Pastan
      PNAS May 31, 2005 102 (22) 7946-7951; https://doi.org/10.1073/pnas.0502975102
    • You have access
      Microbes on the human vaginal epithelium
      Richard W. Hyman, Marilyn Fukushima, Lisa Diamond, Jochen Kumm, Linda C. Giudice, and Ronald W. Davis
      PNAS May 31, 2005 102 (22) 7952-7957; https://doi.org/10.1073/pnas.0503236102
    • You have access
      Anthrax lethal factor inhibition
      W. L. Shoop, Y. Xiong, J. Wiltsie, A. Woods, J. Guo, J. V. Pivnichny, T. Felcetto, B. F. Michael, A. Bansal, R. T. Cummings, B. R. Cunningham, A. M. Friedlander, C. M. Douglas, S. B. Patel, D. Wisniewski, G. Scapin, S. P. Salowe, D. M. Zaller, K. T. Chapman, E. M. Scolnick, D. M. Schmatz, K. Bartizal, M. MacCoss, and J. D. Hermes
      PNAS May 31, 2005 102 (22) 7958-7963; https://doi.org/10.1073/pnas.0502159102
    • You have access
      Cell-replacement therapy for diabetes: Generating functional insulin-producing tissue from adult human liver cells
      • From the Cover
      Tamar Sapir, Keren Shternhall, Irit Meivar-Levy, Tamar Blumenfeld, Hamutal Cohen, Ehud Skutelsky, Smadar Eventov-Friedman, Iris Barshack, Iris Goldberg, Sarah Pri-Chen, Lya Ben-Dor, Sylvie Polak-Charcon, Avraham Karasik, Ilan Shimon, Eytan Mor, and Sarah Ferber
      PNAS May 31, 2005 102 (22) 7964-7969; https://doi.org/10.1073/pnas.0405277102

      See companion article:

      • Molecular engineering human hepatocytes into pancreatic beta cells for diabetes therapy
        - May 23, 2005
      • This Week in PNAS
        - May 31, 2005
    • You have access
      MB06322 (CS-917): A potent and selective inhibitor of fructose 1,6-bisphosphatase for controlling gluconeogenesis in type 2 diabetes
      Mark D. Erion, Paul D. van Poelje, Qun Dang, Srinivas Rao Kasibhatla, Scott C. Potter, M. Rami Reddy, K. Raja Reddy, Tao Jiang, and William N. Lipscomb
      PNAS May 31, 2005 102 (22) 7970-7975; https://doi.org/10.1073/pnas.0502983102
    • You have access
      Synergistic effects of light-emitting probes and peptides for targeting and monitoring integrin expression
      Samuel Achilefu, Sharon Bloch, Mary A. Markiewicz, Tuoxiu Zhong, Yunpeng Ye, Richard B. Dorshow, Britton Chance, and Kexian Liang
      PNAS May 31, 2005 102 (22) 7976-7981; https://doi.org/10.1073/pnas.0503500102
  • Microbiology

    • You have access
      The antiretroviral activity of APOBEC3 is inhibited by the foamy virus accessory Bet protein
      Martin Löchelt, Fabian Romen, Patrizia Bastone, Heide Muckenfuss, Nadine Kirchner, Yong-Boum Kim, Uwe Truyen, Uwe Rösler, Marion Battenberg, Ali Saib, Egbert Flory, Klaus Cichutek, and Carsten Münk
      PNAS May 31, 2005 102 (22) 7982-7987; https://doi.org/10.1073/pnas.0501445102
    • You have access
      Human coronavirus NL63 employs the severe acute respiratory syndrome coronavirus receptor for cellular entry
      Heike Hofmann, Krzysztof Pyrc, Lia van der Hoek, Martina Geier, Ben Berkhout, and Stefan Pöhlmann
      PNAS May 31, 2005 102 (22) 7988-7993; https://doi.org/10.1073/pnas.0409465102
    • You have access
      Emergence of unique primate T-lymphotropic viruses among central African bushmeat hunters
      Nathan D. Wolfe, Walid Heneine, Jean K. Carr, Albert D. Garcia, Vedapuri Shanmugam, Ubald Tamoufe, Judith N. Torimiro, A. Tassy Prosser, Matthew LeBreton, Eitel Mpoudi-Ngole, Francine E. McCutchan, Deborah L. Birx, Thomas M. Folks, Donald S. Burke, and William M. Switzer
      PNAS May 31, 2005 102 (22) 7994-7999; https://doi.org/10.1073/pnas.0501734102
    • You have access
      Resting naïve CD4+ T cells are massively infected and eliminated by X4-tropic simian–human immunodeficiency viruses in macaques
      Yoshiaki Nishimura, Charles R. Brown, Joseph J. Mattapallil, Tatsuhiko Igarashi, Alicia Buckler-White, Bernard A. P. Lafont, Vanessa M. Hirsch, Mario Roederer, and Malcolm A. Martin
      PNAS May 31, 2005 102 (22) 8000-8005; https://doi.org/10.1073/pnas.0503233102
    • You have access
      ExsE, a secreted regulator of type III secretion genes in Pseudomonas aeruginosa
      Arne Rietsch, Isabelle Vallet-Gely, Simon L. Dove, and John J. Mekalanos
      PNAS May 31, 2005 102 (22) 8006-8011; https://doi.org/10.1073/pnas.0503005102
    • You have access
      Rapid identification and strain-typing of respiratory pathogens for epidemic surveillance
      David J. Ecker, Rangarajan Sampath, Lawrence B. Blyn, Mark W. Eshoo, Cristina Ivy, Joseph A. Ecker, Brian Libby, Vivek Samant, Kristin A. Sannes-Lowery, Rachael E. Melton, Kevin Russell, Nikki Freed, Chris Barrozo, Jianguo Wu, Karl Rudnick, Anjali Desai, Emily Moradi, Duane J. Knize, David W. Robbins, James C. Hannis, Patina M. Harrell, Christian Massire, Thomas A. Hall, Yun Jiang, Raymond Ranken, Jared J. Drader, Neill White, John A. McNeil, Stanley T. Crooke, and Steven A. Hofstadler
      PNAS May 31, 2005 102 (22) 8012-8017; https://doi.org/10.1073/pnas.0409920102
    • You have access
      Conserved modular design of an oxygen sensory/signaling network with species-specific output
      Sean Crosson, Patrick T. McGrath, Craig Stephens, Harley H. McAdams, and Lucy Shapiro
      PNAS May 31, 2005 102 (22) 8018-8023; https://doi.org/10.1073/pnas.0503022102
  • Neuroscience

    • You have access
      Increased glutathione S-transferase activity rescues dopaminergic neuron loss in a Drosophila model of Parkinson's disease
      Alexander J. Whitworth, Dorothy A. Theodore, Jessica C. Greene, Helen Beneš, Paul D. Wes, and Leo J. Pallanck
      PNAS May 31, 2005 102 (22) 8024-8029; https://doi.org/10.1073/pnas.0501078102
    • You have access
      Carbonic anhydrase XIV is enriched in specific membrane domains of retinal pigment epithelium, Müller cells, and astrocytes
      Erlend A. Nagelhus, Thomas M. Mathiisen, Allen C. Bateman, Finn-M. Haug, Ole P. Ottersen, Jeffrey H. Grubb, Abdul Waheed, and William S. Sly
      PNAS May 31, 2005 102 (22) 8030-8035; https://doi.org/10.1073/pnas.0503021102
    • You have access
      Replaceable neurons and neurodegenerative disease share depressed UCHL1 levels
      Anthony J. Lombardino, Xiao-Ching Li, Moritz Hertel, and Fernando Nottebohm
      PNAS May 31, 2005 102 (22) 8036-8041; https://doi.org/10.1073/pnas.0503239102
  • Pharmacology

    • You have access
      P2Y1 receptor signaling is controlled by interaction with the PDZ scaffold NHERF-2
      Sami R. Fam, Maryse Paquet, Amanda M. Castleberry, Heide Oller, C. Justin Lee, Stephen F. Traynelis, Yoland Smith, C. Chris Yun, and Randy A. Hall
      PNAS May 31, 2005 102 (22) 8042-8047; https://doi.org/10.1073/pnas.0408818102
  • Physiology

    • You have access
      Epidermal growth factor prevents prepartum luteolysis in the rat
      M. L. Ribeiro, J. Aisemberg, S. Billi, M. G. Farina, R. Meiss, S. McCann, V. Rettori, M. Villalón, and A. M. Franchi
      PNAS May 31, 2005 102 (22) 8048-8053; https://doi.org/10.1073/pnas.0502899102
  • Plant Biology

    • You have access
      A central role for S-nitrosothiols in plant disease resistance
      Angela Feechan, Eunjung Kwon, Byung-Wook Yun, Yiqin Wang, Jacqueline A. Pallas, and Gary J. Loake
      PNAS May 31, 2005 102 (22) 8054-8059; https://doi.org/10.1073/pnas.0501456102
    • You have access
      Loblolly pine abietadienol/abietadienal oxidase PtAO (CYP720B1) is a multifunctional, multisubstrate cytochrome P450 monooxygenase
      Dae-Kyun Ro, Gen-Ichiro Arimura, Stephen Y. W. Lau, Edward Piers, and Jörg Bohlmann
      PNAS May 31, 2005 102 (22) 8060-8065; https://doi.org/10.1073/pnas.0500825102
    • You have access
      Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization
      Sonia Güimil, Hur-Song Chang, Tong Zhu, Ane Sesma, Anne Osbourn, Christophe Roux, Vassilios Ioannidis, Edward J. Oakeley, Mylène Docquier, Patrick Descombes, Steven P. Briggs, and Uta Paszkowski
      PNAS May 31, 2005 102 (22) 8066-8070; https://doi.org/10.1073/pnas.0502999102
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