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Table of Contents

January 25, 2005; vol. 102 no. 4

In This Issue

  • You have access
    This Week in PNAS
    PNAS January 25, 2005 102 (4) 957-958; https://doi.org/10.1073/iti0405102

    See companion article:

    • Visual speech speeds up the neural processing of auditory speech
      - Jan 12, 2005
    • Statistical coevolution analysis and molecular dynamics: Identification of amino acid pairs essential for catalysis
      - Jan 18, 2005
    • The economics of ideas and intellectual property
      - Jan 18, 2005
    • Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae
      - Jan 12, 2005
    • Genetic deletion of the Nogo receptor does not reduce neurite inhibition in vitro or promote corticospinal tract regeneration in vivo
      - Jan 12, 2005

Commentary

  • You have access
    Three-pronged genomic analysis reveals yeast cell-type regulation circuitry
    George F. Sprague Jr.
    PNAS January 25, 2005 102 (4) 959-960; https://doi.org/10.1073/pnas.0409007102

    See companion article:

    • Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae
      - Dec 16, 2004

Physical Sciences

  • Chemistry

    • You have access
      Planar-to-tubular structural transition in boron clusters: B20 as the embryo of single-walled boron nanotubes
      • From the Cover
      Boggavarapu Kiran, Satya Bulusu, Hua-Jin Zhai, Soohaeng Yoo, Xiao Cheng Zeng, and Lai-Sheng Wang
      PNAS January 25, 2005 102 (4) 961-964; https://doi.org/10.1073/pnas.0408132102
    • You have access
      A fluorescent probe designed for studying protein conformational change
      Bruce E. Cohen, Arnd Pralle, XiaoJie Yao, Gayathri Swaminath, Chris S. Gandhi, Yuh Nung Jan, Brian K. Kobilka, Ehud Y. Isacoff, and Lily Y. Jan
      PNAS January 25, 2005 102 (4) 965-970; https://doi.org/10.1073/pnas.0409469102
    • You have access
      Mesoscopic self-organization of a self-assembled supramolecular rectangle on highly oriented pyrolytic graphite and Au(111) surfaces
      Jian-Ru Gong, Li-Jun Wan, Qun-Hui Yuan, Chun-Li Bai, Hershel Jude, and Peter J. Stang
      PNAS January 25, 2005 102 (4) 971-974; https://doi.org/10.1073/pnas.0409145102
    • You have access
      Directing cell migration with asymmetric micropatterns
      Xingyu Jiang, Derek A. Bruzewicz, Amy P. Wong, Matthieu Piel, and George M. Whitesides
      PNAS January 25, 2005 102 (4) 975-978; https://doi.org/10.1073/pnas.0408954102
  • Geology

    • You have access
      Nanoscale environments associated with bioweathering of a Mg-Fe-pyroxene
      Karim Benzerara, Tae Hyun Yoon, Nicolas Menguy, Tolek Tyliszczak, and Gordon E. Brown Jr.
      PNAS January 25, 2005 102 (4) 979-982; https://doi.org/10.1073/pnas.0409029102

Social Sciences

  • Economic Sciences

    • You have access
      The economics of ideas and intellectual property
      Michele Boldrin and David K. Levine
      PNAS January 25, 2005 102 (4) 1252-1256; https://doi.org/10.1073/pnas.0407730102

      See companion article:

      • This Week in PNAS
        - Jan 25, 2005
  • Psychology

    • You have access
      Redefining implicit and explicit memory: The functional neuroanatomy of priming, remembering, and control of retrieval
      Björn H. Schott, Richard N. Henson, Alan Richardson-Klavehn, Christine Becker, Volker Thoma, Hans-Jochen Heinze, and Emrah Düzel
      PNAS January 25, 2005 102 (4) 1257-1262; https://doi.org/10.1073/pnas.0409070102

Biological Sciences

  • Applied Biological Sciences

    • You have access
      Metabolizing enzyme toxicology assay chip (MetaChip) for high-throughput microscale toxicity analyses
      • From the Cover
      Moo-Yeal Lee, Chan Beum Park, Jonathan S. Dordick, and Douglas S. Clark
      PNAS January 25, 2005 102 (4) 983-987; https://doi.org/10.1073/pnas.0406755102
  • Biochemistry

    • You have access
      Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase
      Manal A. Swairjo and Paul R. Schimmel
      PNAS January 25, 2005 102 (4) 988-993; https://doi.org/10.1073/pnas.0409024102
    • You have access
      Statistical coevolution analysis and molecular dynamics: Identification of amino acid pairs essential for catalysis
      R. August Estabrook, Jia Luo, Matthew M. Purdy, Vyas Sharma, Paul Weakliem, Thomas C. Bruice, and Norbert O. Reich
      PNAS January 25, 2005 102 (4) 994-999; https://doi.org/10.1073/pnas.0409128102

      See companion article:

      • This Week in PNAS
        - Jan 25, 2005
    • You have access
      Human maintenance DNA (cytosine-5)-methyltransferase and p53 modulate expression of p53-repressed promoters
      Pierre-Olivier Estève, Hang Gyeong Chin, and Sriharsa Pradhan
      PNAS January 25, 2005 102 (4) 1000-1005; https://doi.org/10.1073/pnas.0407729102
    • You have access
      α-Lytic protease can exist in two separately stable conformations with different His57 mobilities and catalytic activities
      Kristin Coffman Haddad, James L. Sudmeier, Daniel A. Bachovchin, and William W. Bachovchin
      PNAS January 25, 2005 102 (4) 1006-1011; https://doi.org/10.1073/pnas.0409279102
    • You have access
      Characterization of potential selenium-binding proteins in the selenophosphate synthetase system
      Yuki Ogasawara, Gerard M. Lacourciere, Kazuyuki Ishii, and Thressa C. Stadtman
      PNAS January 25, 2005 102 (4) 1012-1016; https://doi.org/10.1073/pnas.0409042102
    • You have access
      Reconstitution of uridine-deletion precleaved RNA editing with two recombinant enzymes
      Xuedong Kang, Kestrel Rogers, Guanghan Gao, Arnold M. Falick, Sharleen Zhou, and Larry Simpson
      PNAS January 25, 2005 102 (4) 1017-1022; https://doi.org/10.1073/pnas.0409275102
    • You have access
      Altering the interaction between σ70 and RNA polymerase generates complexes with distinct transcription-elongation properties
      Yvonne Berghöfer-Hochheimer, Chi Zen Lu, and Carol A. Gross
      PNAS January 25, 2005 102 (4) 1157-1162; https://doi.org/10.1073/pnas.0408973102
  • Biophysics

    • You have access
      A fluorescent probe designed for studying protein conformational change
      Bruce E. Cohen, Arnd Pralle, XiaoJie Yao, Gayathri Swaminath, Chris S. Gandhi, Yuh Nung Jan, Brian K. Kobilka, Ehud Y. Isacoff, and Lily Y. Jan
      PNAS January 25, 2005 102 (4) 965-970; https://doi.org/10.1073/pnas.0409469102
    • You have access
      A partial atomic structure for the flagellar hook of Salmonella typhimurium
      Tanvir R. Shaikh, Dennis R. Thomas, James Z. Chen, Fadel A. Samatey, Hideyuki Matsunami, Katsumi Imada, Keiichi Namba, and David J. DeRosier
      PNAS January 25, 2005 102 (4) 1023-1028; https://doi.org/10.1073/pnas.0409020102
    • You have access
      The protein structure prediction problem could be solved using the current PDB library
      Yang Zhang and Jeffrey Skolnick
      PNAS January 25, 2005 102 (4) 1029-1034; https://doi.org/10.1073/pnas.0407152101
    • You have access
      Probing counterion modulated repulsion and attraction between nucleic acid duplexes in solution
      Yu Bai, Rhiju Das, Ian S. Millett, Daniel Herschlag, and Sebastian Doniach
      PNAS January 25, 2005 102 (4) 1035-1040; https://doi.org/10.1073/pnas.0404448102
    • You have access
      Development and evaluation of a microdevice for amino acid biomarker detection and analysis on Mars
      Alison M. Skelley, James R. Scherer, Andrew D. Aubrey, William H. Grover, Robin H. C. Ivester, Pascale Ehrenfreund, Frank J. Grunthaner, Jeffrey L. Bada, and Richard A. Mathies
      PNAS January 25, 2005 102 (4) 1041-1046; https://doi.org/10.1073/pnas.0406798102
    • You have access
      In vivo modulation of morphogenetic movements in Drosophila embryos with femtosecond laser pulses
      Willy Supatto, Delphine Débarre, Bruno Moulia, Eric Brouzés, Jean-Louis Martin, Emmanuel Farge, and Emmanuel Beaurepaire
      PNAS January 25, 2005 102 (4) 1047-1052; https://doi.org/10.1073/pnas.0405316102
    • You have access
      The N-terminal to C-terminal motif in protein folding and function
      Mallela M. G. Krishna and S. Walter Englander
      PNAS January 25, 2005 102 (4) 1053-1058; https://doi.org/10.1073/pnas.0409114102
  • Cell Biology

    • You have access
      Targeting gene expression selectively in cancer cells by using the progression-elevated gene-3 promoter
      Zhao-Zhong Su, Devanand Sarkar, Luni Emdad, Gregory J. Duigou, Charles S. H. Young, Joy Ware, Aaron Randolph, Kristoffer Valerie, and Paul B. Fisher
      PNAS January 25, 2005 102 (4) 1059-1064; https://doi.org/10.1073/pnas.0409141102
    • You have access
      DNA damage-induced mitotic catastrophe is mediated by the Chk1-dependent mitotic exit DNA damage checkpoint
      Xingxu Huang, Thanh Tran, Lingna Zhang, Rashieda Hatcher, and Pumin Zhang
      PNAS January 25, 2005 102 (4) 1065-1070; https://doi.org/10.1073/pnas.0409130102
    • You have access
      Age-specific incidence of inherited versus sporadic cancers: A test of the multistage theory of carcinogenesis
      Steven A. Frank
      PNAS January 25, 2005 102 (4) 1071-1075; https://doi.org/10.1073/pnas.0407299102
  • Developmental Biology

    • You have access
      Essential role of Flk-1 (VEGF receptor 2) tyrosine residue 1173 in vasculogenesis in mice
      Yoshiko Sakurai, Kaori Ohgimoto, Yuki Kataoka, Nobuaki Yoshida, and Masabumi Shibuya
      PNAS January 25, 2005 102 (4) 1076-1081; https://doi.org/10.1073/pnas.0404984102
    • You have access
      Requirement for serum response factor for skeletal muscle growth and maturation revealed by tissue-specific gene deletion in mice
      Shijie Li, Michael P. Czubryt, John McAnally, Rhonda Bassel-Duby, James A. Richardson, Franziska F. Wiebel, Alfred Nordheim, and Eric N. Olson
      PNAS January 25, 2005 102 (4) 1082-1087; https://doi.org/10.1073/pnas.0409103102
  • Ecology

    • You have access
      Recent biological invasion may hasten invasional meltdown by accelerating historical introductions
      Edwin D. Grosholz
      PNAS January 25, 2005 102 (4) 1088-1091; https://doi.org/10.1073/pnas.0308547102
  • Evolution

    • You have access
      Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae
      Zhenglong Gu, Lior David, Dmitri Petrov, Ted Jones, Ronald W. Davis, and Lars M. Steinmetz
      PNAS January 25, 2005 102 (4) 1092-1097; https://doi.org/10.1073/pnas.0409159102

      See companion article:

      • This Week in PNAS
        - Jan 25, 2005
  • Genetics

    • You have access
      Abelson-interactor-1 promotes WAVE2 membrane translocation and Abelson-mediated tyrosine phosphorylation required for WAVE2 activation
      Yan Leng, Jinyi Zhang, Karen Badour, Enrico Arpaia, Spencer Freeman, Pam Cheung, Michael Siu, and Katherine Siminovitch
      PNAS January 25, 2005 102 (4) 1098-1103; https://doi.org/10.1073/pnas.0409120102
    • You have access
      AML1-ETO and C-KIT mutation/overexpression in t(8;21) leukemia: Implication in stepwise leukemogenesis and response to Gleevec
      Yue-Ying Wang, Guang-Biao Zhou, Tong Yin, Bing Chen, Jing-Yi Shi, Wen-Xue Liang, Xiao-Long Jin, Jian-Hua You, Guang Yang, Zhi-Xiang Shen, Jue Chen, Shu-Min Xiong, Guo-Qiang Chen, Feng Xu, Yi-Wei Liu, Zhu Chen, and Sai-Juan Chen
      PNAS January 25, 2005 102 (4) 1104-1109; https://doi.org/10.1073/pnas.0408831102
    • You have access
      Human Fanconi anemia monoubiquitination pathway promotes homologous DNA repair
      Koji Nakanishi, Yun-Gui Yang, Andrew J. Pierce, Toshiyasu Taniguchi, Martin Digweed, Alan D. D'Andrea, Zhao-Qi Wang, and Maria Jasin
      PNAS January 25, 2005 102 (4) 1110-1115; https://doi.org/10.1073/pnas.0407796102
  • Immunology

    • You have access
      A coreceptor interaction between the CD28 and TNF receptor family members B and T lymphocyte attenuator and herpesvirus entry mediator
      Lino C. Gonzalez, Kelly M. Loyet, Jill Calemine-Fenaux, Vandana Chauhan, Bernd Wranik, Wenjun Ouyang, and Dan L. Eaton
      PNAS January 25, 2005 102 (4) 1116-1121; https://doi.org/10.1073/pnas.0409071102
    • You have access
      Drosophila peptidoglycan recognition protein LC (PGRP-LC) acts as a signal-transducing innate immune receptor
      Kwang-Min Choe, Hyangkyu Lee, and Kathryn V. Anderson
      PNAS January 25, 2005 102 (4) 1122-1126; https://doi.org/10.1073/pnas.0404952102
    • You have access
      Glycolipid presentation to natural killer T cells differs in an organ-dependent fashion
      John Schmieg, Guangli Yang, Richard W. Franck, Nico Van Rooijen, and Moriya Tsuji
      PNAS January 25, 2005 102 (4) 1127-1132; https://doi.org/10.1073/pnas.0408288102
  • Medical Sciences

    • You have access
      Directing oncogenic fusion genes into stem cells via an SCL enhancer
      Mariko Eguchi, Minenori Eguchi-Ishimae, Anthony Green, Tariq Enver, and Mel Greaves
      PNAS January 25, 2005 102 (4) 1133-1138; https://doi.org/10.1073/pnas.0405318102
    • You have access
      Clonal expansion of hepatocytes during chronic woodchuck hepatitis virus infection
      William S. Mason, Allison R. Jilbert, and Jesse Summers
      PNAS January 25, 2005 102 (4) 1139-1144; https://doi.org/10.1073/pnas.0409332102
    • You have access
      Imaging bacterial infections with radiolabeled 1-(2′-deoxy-2′-fluoro-β-D-arabinofuranosyl)-5-iodouracil
      • From the Cover
      Chetan Bettegowda, Catherine A. Foss, Ian Cheong, Yuchuan Wang, Luis Diaz, Nishant Agrawal, James Fox, James Dick, Long H. Dang, Shibin Zhou, Kenneth W. Kinzler, Bert Vogelstein, and Martin G. Pomper
      PNAS January 25, 2005 102 (4) 1145-1150; https://doi.org/10.1073/pnas.0408861102
    • You have access
      Mutation of the androgen receptor causes oncogenic transformation of the prostate
      Guangzhou Han, Grant Buchanan, Michael Ittmann, Jonathan M. Harris, Xiaoqing Yu, Francesco J. DeMayo, Wayne Tilley, and Norman M. Greenberg
      PNAS January 25, 2005 102 (4) 1151-1156; https://doi.org/10.1073/pnas.0408925102
  • Microbiology

    • You have access
      Altering the interaction between σ70 and RNA polymerase generates complexes with distinct transcription-elongation properties
      Yvonne Berghöfer-Hochheimer, Chi Zen Lu, and Carol A. Gross
      PNAS January 25, 2005 102 (4) 1157-1162; https://doi.org/10.1073/pnas.0408973102
    • You have access
      Pathogenic hantaviruses bind plexin–semaphorin–integrin domains present at the apex of inactive, bent αvβ3 integrin conformers
      Tracy Raymond, Elena Gorbunova, Irina N. Gavrilovskaya, and Erich R. Mackow
      PNAS January 25, 2005 102 (4) 1163-1168; https://doi.org/10.1073/pnas.0406743102
    • You have access
      EsxA and EsxB are secreted by an ESAT-6-like system that is required for the pathogenesis of Staphylococcus aureus infections
      Monica L. Burts, Wade A. Williams, Kristin DeBord, and Dominique M. Missiakas
      PNAS January 25, 2005 102 (4) 1169-1174; https://doi.org/10.1073/pnas.0405620102
    • You have access
      Expression of a viral polymerase-bound host factor turns human cell lines permissive to a plant- and insect-infecting virus
      Ricardo B. de Medeiros, Juliana Figueiredo, Renato de O. Resende, and Antonio C. De Avila
      PNAS January 25, 2005 102 (4) 1175-1180; https://doi.org/10.1073/pnas.0406668102
  • Neuroscience

    • You have access
      Visual speech speeds up the neural processing of auditory speech
      Virginie van Wassenhove, Ken W. Grant, and David Poeppel
      PNAS January 25, 2005 102 (4) 1181-1186; https://doi.org/10.1073/pnas.0408949102

      See companion article:

      • This Week in PNAS
        - Jan 25, 2005
    • You have access
      A form of DISC1 enriched in nucleus: Altered subcellular distribution in orbitofrontal cortex in psychosis and substance/alcohol abuse
      Naoya Sawamura, Takako Sawamura-Yamamoto, Yuji Ozeki, Christopher A. Ross, and Akira Sawa
      PNAS January 25, 2005 102 (4) 1187-1192; https://doi.org/10.1073/pnas.0406543102
    • You have access
      Loss of perivascular aquaporin 4 may underlie deficient water and K+ homeostasis in the human epileptogenic hippocampus
      Tore Eid, Tih-Shih W. Lee, Marion J. Thomas, Mahmood Amiry-Moghaddam, Lars P. Bjørnsen, Dennis D. Spencer, Peter Agre, Ole P. Ottersen, and Nihal C. de Lanerolle
      PNAS January 25, 2005 102 (4) 1193-1198; https://doi.org/10.1073/pnas.0409308102
    • You have access
      Glutamate regulation of DARPP-32 phosphorylation in neostriatal neurons involves activation of multiple signaling cascades
      Akinori Nishi, Yasuo Watanabe, Hideho Higashi, Masatoshi Tanaka, Angus C. Nairn, and Paul Greengard
      PNAS January 25, 2005 102 (4) 1199-1204; https://doi.org/10.1073/pnas.0409138102
    • You have access
      Genetic deletion of the Nogo receptor does not reduce neurite inhibition in vitro or promote corticospinal tract regeneration in vivo
      • From the Cover
      Binhai Zheng, Jasvinder Atwal, Carole Ho, Lauren Case, Xiao-lin He, K. Christopher Garcia, Oswald Steward, and Marc Tessier-Lavigne
      PNAS January 25, 2005 102 (4) 1205-1210; https://doi.org/10.1073/pnas.0409026102

      See companion article:

      • This Week in PNAS
        - Jan 25, 2005
    • You have access
      Gene delivery of human apolipoprotein E alters brain Aβ burden in a mouse model of Alzheimer's disease
      Jean-Cosme Dodart, Robert A. Marr, Milla Koistinaho, Beth M. Gregersen, Seema Malkani, Inder M. Verma, and Steven M. Paul
      PNAS January 25, 2005 102 (4) 1211-1216; https://doi.org/10.1073/pnas.0409072102
    • You have access
      Rhabdomeric phototransduction initiated by the vertebrate photopigment melanopsin
      Mauro Cesar Isoldi, Mark D. Rollag, Ana Maria de Lauro Castrucci, and Ignacio Provencio
      PNAS January 25, 2005 102 (4) 1217-1221; https://doi.org/10.1073/pnas.0409252102
    • You have access
      Melatonin synthesis: 14-3-3-dependent activation and inhibition of arylalkylamine N-acetyltransferase mediated by phosphoserine-205
      Surajit Ganguly, Joan L. Weller, Anthony Ho, Philippe Chemineau, Benoit Malpaux, and David C. Klein
      PNAS January 25, 2005 102 (4) 1222-1227; https://doi.org/10.1073/pnas.0406871102
    • You have access
      Natural-scene geometry predicts the perception of angles and line orientation
      Catherine Q. Howe and Dale Purves
      PNAS January 25, 2005 102 (4) 1228-1233; https://doi.org/10.1073/pnas.0409311102
    • You have access
      The Müller-Lyer illusion explained by the statistics of image–source relationships
      Catherine Q. Howe and Dale Purves
      PNAS January 25, 2005 102 (4) 1234-1239; https://doi.org/10.1073/pnas.0409314102
    • You have access
      Redefining implicit and explicit memory: The functional neuroanatomy of priming, remembering, and control of retrieval
      Björn H. Schott, Richard N. Henson, Alan Richardson-Klavehn, Christine Becker, Volker Thoma, Hans-Jochen Heinze, and Emrah Düzel
      PNAS January 25, 2005 102 (4) 1257-1262; https://doi.org/10.1073/pnas.0409070102
  • Physiology

    • You have access
      Insulin-like growth factor-binding protein-1 (IGFBP-1) mediates hypoxia-induced embryonic growth and developmental retardation
      • From the Cover
      Shingo Kajimura, Katsumi Aida, and Cunming Duan
      PNAS January 25, 2005 102 (4) 1240-1245; https://doi.org/10.1073/pnas.0407443102
  • Psychology

    • You have access
      Anticipating the three-dimensional consequences of eye movements
      Mark Wexler
      PNAS January 25, 2005 102 (4) 1246-1251; https://doi.org/10.1073/pnas.0409241102

Correction

  • You have access
    Correction for Nedvetzki et al., RHAMM, a receptor for hyaluronan-mediated motility, compensates for CD44 in inflamed CD44-knockout mice: A different interpretation of redundancy, PNAS 2004 101:18081-18086
    PNAS January 25, 2005 102 (4) 1263; https://doi.org/10.1073/pnas.0409514102
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