Proceedings of the National Academy of Sciences of the United States of America: 102 (4)

New Research In

January 25, 2005; vol. 102 no. 4

In This Issue

You have access
This Week in PNAS
PNAS January 25, 2005 102 (4) 957-958; https://doi.org/10.1073/iti0405102

Commentary

You have access
Three-pronged genomic analysis reveals yeast cell-type regulation circuitry
George F. Sprague Jr.

PNAS January 25, 2005 102 (4) 959-960; https://doi.org/10.1073/pnas.0409007102

Physical Sciences

Chemistry
- You have access
  Planar-to-tubular structural transition in boron clusters: B₂₀ as the embryo of single-walled boron nanotubes
  From the Cover
  
  Boggavarapu Kiran, Satya Bulusu, Hua-Jin Zhai, Soohaeng Yoo, Xiao Cheng Zeng, and Lai-Sheng Wang
  
  PNAS January 25, 2005 102 (4) 961-964; https://doi.org/10.1073/pnas.0408132102
- You have access
  A fluorescent probe designed for studying protein conformational change
  Bruce E. Cohen, Arnd Pralle, XiaoJie Yao, Gayathri Swaminath, Chris S. Gandhi, Yuh Nung Jan, Brian K. Kobilka, Ehud Y. Isacoff, and Lily Y. Jan
  
  PNAS January 25, 2005 102 (4) 965-970; https://doi.org/10.1073/pnas.0409469102
- You have access
  Mesoscopic self-organization of a self-assembled supramolecular rectangle on highly oriented pyrolytic graphite and Au(111) surfaces
  Jian-Ru Gong, Li-Jun Wan, Qun-Hui Yuan, Chun-Li Bai, Hershel Jude, and Peter J. Stang
  
  PNAS January 25, 2005 102 (4) 971-974; https://doi.org/10.1073/pnas.0409145102
- You have access
  Directing cell migration with asymmetric micropatterns
  Xingyu Jiang, Derek A. Bruzewicz, Amy P. Wong, Matthieu Piel, and George M. Whitesides
  
  PNAS January 25, 2005 102 (4) 975-978; https://doi.org/10.1073/pnas.0408954102
Geology
- You have access
  Nanoscale environments associated with bioweathering of a Mg-Fe-pyroxene
  Karim Benzerara, Tae Hyun Yoon, Nicolas Menguy, Tolek Tyliszczak, and Gordon E. Brown Jr.
  
  PNAS January 25, 2005 102 (4) 979-982; https://doi.org/10.1073/pnas.0409029102

Biological Sciences

Applied Biological Sciences
- You have access
  Metabolizing enzyme toxicology assay chip (MetaChip) for high-throughput microscale toxicity analyses
  From the Cover
  
  Moo-Yeal Lee, Chan Beum Park, Jonathan S. Dordick, and Douglas S. Clark
  
  PNAS January 25, 2005 102 (4) 983-987; https://doi.org/10.1073/pnas.0406755102
Biochemistry
- You have access
  Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase
  Manal A. Swairjo and Paul R. Schimmel
  
  PNAS January 25, 2005 102 (4) 988-993; https://doi.org/10.1073/pnas.0409024102
- You have access
  Statistical coevolution analysis and molecular dynamics: Identification of amino acid pairs essential for catalysis
  R. August Estabrook, Jia Luo, Matthew M. Purdy, Vyas Sharma, Paul Weakliem, Thomas C. Bruice, and Norbert O. Reich
  
  PNAS January 25, 2005 102 (4) 994-999; https://doi.org/10.1073/pnas.0409128102
- You have access
  Human maintenance DNA (cytosine-5)-methyltransferase and p53 modulate expression of p53-repressed promoters
  Pierre-Olivier Estève, Hang Gyeong Chin, and Sriharsa Pradhan
  
  PNAS January 25, 2005 102 (4) 1000-1005; https://doi.org/10.1073/pnas.0407729102
- You have access
  α-Lytic protease can exist in two separately stable conformations with different His⁵⁷ mobilities and catalytic activities
  Kristin Coffman Haddad, James L. Sudmeier, Daniel A. Bachovchin, and William W. Bachovchin
  
  PNAS January 25, 2005 102 (4) 1006-1011; https://doi.org/10.1073/pnas.0409279102
- You have access
  Characterization of potential selenium-binding proteins in the selenophosphate synthetase system
  Yuki Ogasawara, Gerard M. Lacourciere, Kazuyuki Ishii, and Thressa C. Stadtman
  
  PNAS January 25, 2005 102 (4) 1012-1016; https://doi.org/10.1073/pnas.0409042102
- You have access
  Reconstitution of uridine-deletion precleaved RNA editing with two recombinant enzymes
  Xuedong Kang, Kestrel Rogers, Guanghan Gao, Arnold M. Falick, Sharleen Zhou, and Larry Simpson
  
  PNAS January 25, 2005 102 (4) 1017-1022; https://doi.org/10.1073/pnas.0409275102
- You have access
  Altering the interaction between σ⁷⁰ and RNA polymerase generates complexes with distinct transcription-elongation properties
  Yvonne Berghöfer-Hochheimer, Chi Zen Lu, and Carol A. Gross
  
  PNAS January 25, 2005 102 (4) 1157-1162; https://doi.org/10.1073/pnas.0408973102
Biophysics
- You have access
  A fluorescent probe designed for studying protein conformational change
  Bruce E. Cohen, Arnd Pralle, XiaoJie Yao, Gayathri Swaminath, Chris S. Gandhi, Yuh Nung Jan, Brian K. Kobilka, Ehud Y. Isacoff, and Lily Y. Jan
  
  PNAS January 25, 2005 102 (4) 965-970; https://doi.org/10.1073/pnas.0409469102
- You have access
  A partial atomic structure for the flagellar hook of Salmonella typhimurium
  Tanvir R. Shaikh, Dennis R. Thomas, James Z. Chen, Fadel A. Samatey, Hideyuki Matsunami, Katsumi Imada, Keiichi Namba, and David J. DeRosier
  
  PNAS January 25, 2005 102 (4) 1023-1028; https://doi.org/10.1073/pnas.0409020102
- You have access
  The protein structure prediction problem could be solved using the current PDB library
  Yang Zhang and Jeffrey Skolnick
  
  PNAS January 25, 2005 102 (4) 1029-1034; https://doi.org/10.1073/pnas.0407152101
- You have access
  Probing counterion modulated repulsion and attraction between nucleic acid duplexes in solution
  Yu Bai, Rhiju Das, Ian S. Millett, Daniel Herschlag, and Sebastian Doniach
  
  PNAS January 25, 2005 102 (4) 1035-1040; https://doi.org/10.1073/pnas.0404448102
- You have access
  Development and evaluation of a microdevice for amino acid biomarker detection and analysis on Mars
  Alison M. Skelley, James R. Scherer, Andrew D. Aubrey, William H. Grover, Robin H. C. Ivester, Pascale Ehrenfreund, Frank J. Grunthaner, Jeffrey L. Bada, and Richard A. Mathies
  
  PNAS January 25, 2005 102 (4) 1041-1046; https://doi.org/10.1073/pnas.0406798102
- You have access
  In vivo modulation of morphogenetic movements in Drosophila embryos with femtosecond laser pulses
  Willy Supatto, Delphine Débarre, Bruno Moulia, Eric Brouzés, Jean-Louis Martin, Emmanuel Farge, and Emmanuel Beaurepaire
  
  PNAS January 25, 2005 102 (4) 1047-1052; https://doi.org/10.1073/pnas.0405316102
- You have access
  The N-terminal to C-terminal motif in protein folding and function
  Mallela M. G. Krishna and S. Walter Englander
  
  PNAS January 25, 2005 102 (4) 1053-1058; https://doi.org/10.1073/pnas.0409114102
Cell Biology
- You have access
  Targeting gene expression selectively in cancer cells by using the progression-elevated gene-3 promoter
  Zhao-Zhong Su, Devanand Sarkar, Luni Emdad, Gregory J. Duigou, Charles S. H. Young, Joy Ware, Aaron Randolph, Kristoffer Valerie, and Paul B. Fisher
  
  PNAS January 25, 2005 102 (4) 1059-1064; https://doi.org/10.1073/pnas.0409141102
- You have access
  DNA damage-induced mitotic catastrophe is mediated by the Chk1-dependent mitotic exit DNA damage checkpoint
  Xingxu Huang, Thanh Tran, Lingna Zhang, Rashieda Hatcher, and Pumin Zhang
  
  PNAS January 25, 2005 102 (4) 1065-1070; https://doi.org/10.1073/pnas.0409130102
- You have access
  Age-specific incidence of inherited versus sporadic cancers: A test of the multistage theory of carcinogenesis
  Steven A. Frank
  
  PNAS January 25, 2005 102 (4) 1071-1075; https://doi.org/10.1073/pnas.0407299102
Developmental Biology
- You have access
  Essential role of Flk-1 (VEGF receptor 2) tyrosine residue 1173 in vasculogenesis in mice
  Yoshiko Sakurai, Kaori Ohgimoto, Yuki Kataoka, Nobuaki Yoshida, and Masabumi Shibuya
  
  PNAS January 25, 2005 102 (4) 1076-1081; https://doi.org/10.1073/pnas.0404984102
- You have access
  Requirement for serum response factor for skeletal muscle growth and maturation revealed by tissue-specific gene deletion in mice
  Shijie Li, Michael P. Czubryt, John McAnally, Rhonda Bassel-Duby, James A. Richardson, Franziska F. Wiebel, Alfred Nordheim, and Eric N. Olson
  
  PNAS January 25, 2005 102 (4) 1082-1087; https://doi.org/10.1073/pnas.0409103102
Ecology
- You have access
  Recent biological invasion may hasten invasional meltdown by accelerating historical introductions
  Edwin D. Grosholz
  
  PNAS January 25, 2005 102 (4) 1088-1091; https://doi.org/10.1073/pnas.0308547102
Evolution
- You have access
  Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae
  Zhenglong Gu, Lior David, Dmitri Petrov, Ted Jones, Ronald W. Davis, and Lars M. Steinmetz
  
  PNAS January 25, 2005 102 (4) 1092-1097; https://doi.org/10.1073/pnas.0409159102
Genetics
- You have access
  Abelson-interactor-1 promotes WAVE2 membrane translocation and Abelson-mediated tyrosine phosphorylation required for WAVE2 activation
  Yan Leng, Jinyi Zhang, Karen Badour, Enrico Arpaia, Spencer Freeman, Pam Cheung, Michael Siu, and Katherine Siminovitch
  
  PNAS January 25, 2005 102 (4) 1098-1103; https://doi.org/10.1073/pnas.0409120102
- You have access
  AML1-ETO and C-KIT mutation/overexpression in t(8;21) leukemia: Implication in stepwise leukemogenesis and response to Gleevec
  Yue-Ying Wang, Guang-Biao Zhou, Tong Yin, Bing Chen, Jing-Yi Shi, Wen-Xue Liang, Xiao-Long Jin, Jian-Hua You, Guang Yang, Zhi-Xiang Shen, Jue Chen, Shu-Min Xiong, Guo-Qiang Chen, Feng Xu, Yi-Wei Liu, Zhu Chen, and Sai-Juan Chen
  
  PNAS January 25, 2005 102 (4) 1104-1109; https://doi.org/10.1073/pnas.0408831102
- You have access
  Human Fanconi anemia monoubiquitination pathway promotes homologous DNA repair
  Koji Nakanishi, Yun-Gui Yang, Andrew J. Pierce, Toshiyasu Taniguchi, Martin Digweed, Alan D. D'Andrea, Zhao-Qi Wang, and Maria Jasin
  
  PNAS January 25, 2005 102 (4) 1110-1115; https://doi.org/10.1073/pnas.0407796102
Immunology
- You have access
  A coreceptor interaction between the CD28 and TNF receptor family members B and T lymphocyte attenuator and herpesvirus entry mediator
  Lino C. Gonzalez, Kelly M. Loyet, Jill Calemine-Fenaux, Vandana Chauhan, Bernd Wranik, Wenjun Ouyang, and Dan L. Eaton
  
  PNAS January 25, 2005 102 (4) 1116-1121; https://doi.org/10.1073/pnas.0409071102
- You have access
  Drosophila peptidoglycan recognition protein LC (PGRP-LC) acts as a signal-transducing innate immune receptor
  Kwang-Min Choe, Hyangkyu Lee, and Kathryn V. Anderson
  
  PNAS January 25, 2005 102 (4) 1122-1126; https://doi.org/10.1073/pnas.0404952102
- You have access
  Glycolipid presentation to natural killer T cells differs in an organ-dependent fashion
  John Schmieg, Guangli Yang, Richard W. Franck, Nico Van Rooijen, and Moriya Tsuji
  
  PNAS January 25, 2005 102 (4) 1127-1132; https://doi.org/10.1073/pnas.0408288102
Medical Sciences
- You have access
  Directing oncogenic fusion genes into stem cells via an SCL enhancer
  Mariko Eguchi, Minenori Eguchi-Ishimae, Anthony Green, Tariq Enver, and Mel Greaves
  
  PNAS January 25, 2005 102 (4) 1133-1138; https://doi.org/10.1073/pnas.0405318102
- You have access
  Clonal expansion of hepatocytes during chronic woodchuck hepatitis virus infection
  William S. Mason, Allison R. Jilbert, and Jesse Summers
  
  PNAS January 25, 2005 102 (4) 1139-1144; https://doi.org/10.1073/pnas.0409332102
- You have access
  Imaging bacterial infections with radiolabeled 1-(2′-deoxy-2′-fluoro-β-D-arabinofuranosyl)-5-iodouracil
  From the Cover
  
  Chetan Bettegowda, Catherine A. Foss, Ian Cheong, Yuchuan Wang, Luis Diaz, Nishant Agrawal, James Fox, James Dick, Long H. Dang, Shibin Zhou, Kenneth W. Kinzler, Bert Vogelstein, and Martin G. Pomper
  
  PNAS January 25, 2005 102 (4) 1145-1150; https://doi.org/10.1073/pnas.0408861102
- You have access
  Mutation of the androgen receptor causes oncogenic transformation of the prostate
  Guangzhou Han, Grant Buchanan, Michael Ittmann, Jonathan M. Harris, Xiaoqing Yu, Francesco J. DeMayo, Wayne Tilley, and Norman M. Greenberg
  
  PNAS January 25, 2005 102 (4) 1151-1156; https://doi.org/10.1073/pnas.0408925102
Microbiology
- You have access
  Altering the interaction between σ⁷⁰ and RNA polymerase generates complexes with distinct transcription-elongation properties
  Yvonne Berghöfer-Hochheimer, Chi Zen Lu, and Carol A. Gross
  
  PNAS January 25, 2005 102 (4) 1157-1162; https://doi.org/10.1073/pnas.0408973102
- You have access
  Pathogenic hantaviruses bind plexin–semaphorin–integrin domains present at the apex of inactive, bent αvβ3 integrin conformers
  Tracy Raymond, Elena Gorbunova, Irina N. Gavrilovskaya, and Erich R. Mackow
  
  PNAS January 25, 2005 102 (4) 1163-1168; https://doi.org/10.1073/pnas.0406743102
- You have access
  EsxA and EsxB are secreted by an ESAT-6-like system that is required for the pathogenesis of Staphylococcus aureus infections
  Monica L. Burts, Wade A. Williams, Kristin DeBord, and Dominique M. Missiakas
  
  PNAS January 25, 2005 102 (4) 1169-1174; https://doi.org/10.1073/pnas.0405620102
- You have access
  Expression of a viral polymerase-bound host factor turns human cell lines permissive to a plant- and insect-infecting virus
  Ricardo B. de Medeiros, Juliana Figueiredo, Renato de O. Resende, and Antonio C. De Avila
  
  PNAS January 25, 2005 102 (4) 1175-1180; https://doi.org/10.1073/pnas.0406668102
Neuroscience
- You have access
  Visual speech speeds up the neural processing of auditory speech
  Virginie van Wassenhove, Ken W. Grant, and David Poeppel
  
  PNAS January 25, 2005 102 (4) 1181-1186; https://doi.org/10.1073/pnas.0408949102
- You have access
  A form of DISC1 enriched in nucleus: Altered subcellular distribution in orbitofrontal cortex in psychosis and substance/alcohol abuse
  Naoya Sawamura, Takako Sawamura-Yamamoto, Yuji Ozeki, Christopher A. Ross, and Akira Sawa
  
  PNAS January 25, 2005 102 (4) 1187-1192; https://doi.org/10.1073/pnas.0406543102
- You have access
  Loss of perivascular aquaporin 4 may underlie deficient water and K⁺ homeostasis in the human epileptogenic hippocampus
  Tore Eid, Tih-Shih W. Lee, Marion J. Thomas, Mahmood Amiry-Moghaddam, Lars P. Bjørnsen, Dennis D. Spencer, Peter Agre, Ole P. Ottersen, and Nihal C. de Lanerolle
  
  PNAS January 25, 2005 102 (4) 1193-1198; https://doi.org/10.1073/pnas.0409308102
- You have access
  Glutamate regulation of DARPP-32 phosphorylation in neostriatal neurons involves activation of multiple signaling cascades
  Akinori Nishi, Yasuo Watanabe, Hideho Higashi, Masatoshi Tanaka, Angus C. Nairn, and Paul Greengard
  
  PNAS January 25, 2005 102 (4) 1199-1204; https://doi.org/10.1073/pnas.0409138102
- You have access
  Genetic deletion of the Nogo receptor does not reduce neurite inhibition in vitro or promote corticospinal tract regeneration in vivo
  From the Cover
  
  Binhai Zheng, Jasvinder Atwal, Carole Ho, Lauren Case, Xiao-lin He, K. Christopher Garcia, Oswald Steward, and Marc Tessier-Lavigne
  
  PNAS January 25, 2005 102 (4) 1205-1210; https://doi.org/10.1073/pnas.0409026102
- You have access
  Gene delivery of human apolipoprotein E alters brain Aβ burden in a mouse model of Alzheimer's disease
  Jean-Cosme Dodart, Robert A. Marr, Milla Koistinaho, Beth M. Gregersen, Seema Malkani, Inder M. Verma, and Steven M. Paul
  
  PNAS January 25, 2005 102 (4) 1211-1216; https://doi.org/10.1073/pnas.0409072102
- You have access
  Rhabdomeric phototransduction initiated by the vertebrate photopigment melanopsin
  Mauro Cesar Isoldi, Mark D. Rollag, Ana Maria de Lauro Castrucci, and Ignacio Provencio
  
  PNAS January 25, 2005 102 (4) 1217-1221; https://doi.org/10.1073/pnas.0409252102
- You have access
  Melatonin synthesis: 14-3-3-dependent activation and inhibition of arylalkylamine N-acetyltransferase mediated by phosphoserine-205
  Surajit Ganguly, Joan L. Weller, Anthony Ho, Philippe Chemineau, Benoit Malpaux, and David C. Klein
  
  PNAS January 25, 2005 102 (4) 1222-1227; https://doi.org/10.1073/pnas.0406871102
- You have access
  Natural-scene geometry predicts the perception of angles and line orientation
  Catherine Q. Howe and Dale Purves
  
  PNAS January 25, 2005 102 (4) 1228-1233; https://doi.org/10.1073/pnas.0409311102
- You have access
  The Müller-Lyer illusion explained by the statistics of image–source relationships
  Catherine Q. Howe and Dale Purves
  
  PNAS January 25, 2005 102 (4) 1234-1239; https://doi.org/10.1073/pnas.0409314102
- You have access
  Redefining implicit and explicit memory: The functional neuroanatomy of priming, remembering, and control of retrieval
  Björn H. Schott, Richard N. Henson, Alan Richardson-Klavehn, Christine Becker, Volker Thoma, Hans-Jochen Heinze, and Emrah Düzel
  
  PNAS January 25, 2005 102 (4) 1257-1262; https://doi.org/10.1073/pnas.0409070102
Physiology
- You have access
  Insulin-like growth factor-binding protein-1 (IGFBP-1) mediates hypoxia-induced embryonic growth and developmental retardation
  From the Cover
  
  Shingo Kajimura, Katsumi Aida, and Cunming Duan
  
  PNAS January 25, 2005 102 (4) 1240-1245; https://doi.org/10.1073/pnas.0407443102
Psychology
- You have access
  Anticipating the three-dimensional consequences of eye movements
  Mark Wexler
  
  PNAS January 25, 2005 102 (4) 1246-1251; https://doi.org/10.1073/pnas.0409241102

Correction

You have access
Correction for Nedvetzki et al., RHAMM, a receptor for hyaluronan-mediated motility, compensates for CD44 in inflamed CD44-knockout mice: A different interpretation of redundancy, PNAS 2004 101:18081-18086
PNAS January 25, 2005 102 (4) 1263; https://doi.org/10.1073/pnas.0409514102

Main menu

User menu

Search

New Research In

Table of Contents

In This Issue

Commentary

Physical Sciences

Chemistry

Geology

Biological Sciences

Applied Biological Sciences

Biochemistry

Biophysics

Cell Biology

Developmental Biology

Ecology

Evolution

Genetics

Immunology

Medical Sciences

Microbiology

Neuroscience

Physiology

Psychology

Correction

In this issue

Jump to

Articles

PNAS Portals

Information

Main menu

User menu

Search

New Research In

Physical Sciences

Featured Portals

Articles by Topic

Social Sciences

Featured Portals

Articles by Topic

Biological Sciences

Featured Portals

Articles by Topic

Table of Contents

In This Issue

Commentary

Physical Sciences

Chemistry

Geology

Social Sciences

Economic Sciences

Psychology

Biological Sciences

Applied Biological Sciences

Biochemistry

Biophysics

Cell Biology

Developmental Biology

Ecology

Evolution

Genetics

Immunology

Medical Sciences

Microbiology

Neuroscience

Physiology

Psychology

Correction

In this issue

Jump to

Articles

PNAS Portals

Information