Table of Contents

Biological Sciences

• Agricultural Sciences

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    Glyphosate inhibits rust diseases in glyphosate-resistant wheat and soybean

    Paul C. C. Feng, G. James Baley, William P. Clinton, Greg J. Bunkers, Murtaza F. Alibhai, Timothy C. Paulitz, and Kimberlee K. Kidwell

    PNAS November 29, 2005 102 (48) 17290-17295; https://doi.org/10.1073/pnas.0508873102

• Applied Biological Sciences

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    A data integration methodology for systems biology

    Daehee Hwang, Alistair G. Rust, Stephen Ramsey, Jennifer J. Smith, Deena M. Leslie, Andrea D. Weston, Pedro de Atauri, John D. Aitchison, Leroy Hood, Andrew F. Siegel, and Hamid Bolouri

    PNAS November 29, 2005 102 (48) 17296-17301; https://doi.org/10.1073/pnas.0508647102
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    A data integration methodology for systems biology: Experimental verification

    Daehee Hwang, Jennifer J. Smith, Deena M. Leslie, Andrea D. Weston, Alistair G. Rust, Stephen Ramsey, Pedro de Atauri, Andrew F. Siegel, Hamid Bolouri, John D. Aitchison, and Leroy Hood

    PNAS November 29, 2005 102 (48) 17302-17307; https://doi.org/10.1073/pnas.0508649102

• Biochemistry

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    Structural basis for the recognition between HIV-1 integrase and transcriptional coactivator p75

    • From the Cover

    Peter Cherepanov, Andre L. B. Ambrosio, Shaila Rahman, Tom Ellenberger, and Alan Engelman

    PNAS November 29, 2005 102 (48) 17308-17313; https://doi.org/10.1073/pnas.0506924102

    See companion article:

    • Seeing is believing: Structure of the catalytic domain of HIV-1 integrase in complex with human LEDGF/p75

      - Nov 28, 2005
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    Fcp1 directly recognizes the C-terminal domain (CTD) and interacts with a site on RNA polymerase II distinct from the CTD

    Man-Hee Suh, Ping Ye, Mincheng Zhang, Stéphane Hausmann, Stewart Shuman, Averell L. Gnatt, and Jianhua Fu

    PNAS November 29, 2005 102 (48) 17314-17319; https://doi.org/10.1073/pnas.0507987102
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    Structure of a nonheme globin in environmental stress signaling

    James W. Murray, Olivier Delumeau, and Richard J. Lewis

    PNAS November 29, 2005 102 (48) 17320-17325; https://doi.org/10.1073/pnas.0506599102
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    Knockout of caspase-like gene, YCA1, abrogates apoptosis and elevates oxidized proteins in Saccharomyces cerevisiae

    Mohammed A. S. Khan, P. Boon Chock, and Earl R. Stadtman

    PNAS November 29, 2005 102 (48) 17326-17331; https://doi.org/10.1073/pnas.0508120102
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    Cell-free cloning using φ29 DNA polymerase

    Clyde A. Hutchison III, Hamilton O. Smith, Cynthia Pfannkoch, and J. Craig Venter

    PNAS November 29, 2005 102 (48) 17332-17336; https://doi.org/10.1073/pnas.0508809102
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    Oxygen isotopes indicate most intracellular water in log-phase Escherichia coli is derived from metabolism

    Helen W. Kreuzer-Martin, James R. Ehleringer, and Eric L. Hegg

    PNAS November 29, 2005 102 (48) 17337-17341; https://doi.org/10.1073/pnas.0506531102

• Biophysics

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    3D structure of Alzheimer's amyloid-β(1–42) fibrils

    Thorsten Lührs, Christiane Ritter, Marc Adrian, Dominique Riek-Loher, Bernd Bohrmann, Heinz Döbeli, David Schubert, and Roland Riek

    PNAS November 29, 2005 102 (48) 17342-17347; https://doi.org/10.1073/pnas.0506723102
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    Probing structural heterogeneities and fluctuations of nucleic acids and denatured proteins

    Ted A. Laurence, Xiangxu Kong, Marcus Jäger, and Shimon Weiss

    PNAS November 29, 2005 102 (48) 17348-17353; https://doi.org/10.1073/pnas.0508584102
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    An allosteric model for heterogeneous receptor complexes: Understanding bacterial chemotaxis responses to multiple stimuli

    Bernardo A. Mello and Yuhai Tu

    PNAS November 29, 2005 102 (48) 17354-17359; https://doi.org/10.1073/pnas.0506961102

• Cell Biology

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    Negative regulation of nuclear divisions in Caenorhabditis elegans by retinoblastoma and RNA interference-related genes

    Alla Grishok and Phillip A. Sharp

    PNAS November 29, 2005 102 (48) 17360-17365; https://doi.org/10.1073/pnas.0508989102
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    The DHHC protein Pfa3 affects vacuole-associated palmitoylation of the fusion factor Vac8

    Haitong Hou, Kanagaraj Subramanian, Tracy J. LaGrassa, Daniel Markgraf, Lars E. P. Dietrich, Jörg Urban, Nadine Decker, and Christian Ungermann

    PNAS November 29, 2005 102 (48) 17366-17371; https://doi.org/10.1073/pnas.0508885102
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    Gemin proteins are required for efficient assembly of Sm-class ribonucleoproteins

    Karl B. Shpargel and A. Gregory Matera

    PNAS November 29, 2005 102 (48) 17372-17377; https://doi.org/10.1073/pnas.0508947102

• Developmental Biology

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    β-Catenin regulates myogenesis by relieving I-mfa-mediated suppression of myogenic regulatory factors in P19 cells

    Weijun Pan, Yingying Jia, Jiyong Wang, Donglei Tao, Xiaoqing Gan, Leonidas Tsiokas, Naihe Jing, Dianqing Wu, and Lin Li

    PNAS November 29, 2005 102 (48) 17378-17383; https://doi.org/10.1073/pnas.0505922102

• Environmental Sciences

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    Climatic unpredictability and parasitism of caterpillars: Implications of global warming

    J. O. Stireman III, L. A. Dyer, D. H. Janzen, M. S. Singer, J. T. Lill, R. J. Marquis, R. E. Ricklefs, G. L. Gentry, W. Hallwachs, P. D. Coley, J. A. Barone, H. F. Greeney, H. Connahs, P. Barbosa, H. C. Morais, and I. R. Diniz

    PNAS November 29, 2005 102 (48) 17384-17387; https://doi.org/10.1073/pnas.0508839102

• Evolution

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    “Clonal” population structure of the malaria agent Plasmodium falciparum in high-infection regions

    F. G. Razakandrainibe, P. Durand, J. C. Koella, T. De Meeüs, F. Rousset, F. J. Ayala, and F. Renaud

    PNAS November 29, 2005 102 (48) 17388-17393; https://doi.org/10.1073/pnas.0508871102

    See companion article:

    • This Week in PNAS

      - Nov 29, 2005
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    Coevolution of generalist feeding ecologies and gyrencephalic mushroom bodies in insects

    Sarah M. Farris and Nathan S. Roberts

    PNAS November 29, 2005 102 (48) 17394-17399; https://doi.org/10.1073/pnas.0508430102

• Genetics

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    Identifying the conserved network of cis-regulatory sites of a eukaryotic genome

    Ting Wang and Gary D. Stormo

    PNAS November 29, 2005 102 (48) 17400-17405; https://doi.org/10.1073/pnas.0505147102
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    Lrp5-independent activation of Wnt signaling by lithium chloride increases bone formation and bone mass in mice

    Philippe Clément-Lacroix, Minrong Ai, Frederic Morvan, Sergio Roman-Roman, Béatrice Vayssière, Cecille Belleville, Kenneth Estrera, Matthew L. Warman, Roland Baron, and Georges Rawadi

    PNAS November 29, 2005 102 (48) 17406-17411; https://doi.org/10.1073/pnas.0505259102

• Immunology

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    Visualization of a primary anti-tumor immune response by positron emission tomography

    Chengyi J. Shu, Shuling Guo, Young J. Kim, Stephanie M. Shelly, Amar Nijagal, Pritha Ray, Sanjiv S. Gambhir, Caius G. Radu, and Owen N. Witte

    PNAS November 29, 2005 102 (48) 17412-17417; https://doi.org/10.1073/pnas.0508698102
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    CD4⁺CD25⁺ regulatory T cells limit the risk of autoimmune disease arising from T cell receptor crossreactivity

    Leigh A. Stephens, David Gray, and Stephen M. Anderton

    PNAS November 29, 2005 102 (48) 17418-17423; https://doi.org/10.1073/pnas.0507454102

• Medical Sciences

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    The expression of the pituitary growth hormone-releasing hormone receptor and its splice variants in normal and neoplastic human tissues

    Alexandre Havt, Andrew V. Schally, Gabor Halmos, Jozsef L. Varga, Gabor L. Toller, Judit E. Horvath, Karoly Szepeshazi, Frank Köster, Kevin Kovitz, Kate Groot, Marta Zarandi, and Celia A. Kanashiro

    PNAS November 29, 2005 102 (48) 17424-17429; https://doi.org/10.1073/pnas.0506844102
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    Self renewal, expansion, and transfection of rat spermatogonial stem cells in culture

    F. Kent Hamra, Karen M. Chapman, Derek M. Nguyen, Ashley A. Williams-Stephens, Robert E. Hammer, and David L. Garbers

    PNAS November 29, 2005 102 (48) 17430-17435; https://doi.org/10.1073/pnas.0508780102
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    Transformation of breast cells by truncated neurokinin-1 receptor is secondary to activation by preprotachykinin-A peptides

    Hiral J. Patel, Shakti H. Ramkissoon, Prem S. Patel, and Pranela Rameshwar

    PNAS November 29, 2005 102 (48) 17436-17441; https://doi.org/10.1073/pnas.0506351102
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    Quantitative mass spectral evidence for the absence of circulating brain natriuretic peptide (BNP-32) in severe human heart failure

    Adam M. Hawkridge, Denise M. Heublein, H. Robert Bergen III, Alessandro Cataliotti, John C. Burnett Jr., and David C. Muddiman

    PNAS November 29, 2005 102 (48) 17442-17447; https://doi.org/10.1073/pnas.0508782102
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    Small molecules that reactivate p53 in renal cell carcinoma reveal a NF-κB-dependent mechanism of p53 suppression in tumors

    Katerina V. Gurova, Jason E. Hill, Canhui Guo, Anatoly Prokvolit, Lyudmila G. Burdelya, Eugenia Samoylova, Anna V. Khodyakova, Ram Ganapathi, Mahrukh Ganapathi, Natalia D. Tararova, Dmitry Bosykh, Dmitriy Lvovskiy, Thomas R. Webb, George R. Stark, and Andrei V. Gudkov

    PNAS November 29, 2005 102 (48) 17448-17453; https://doi.org/10.1073/pnas.0508888102

• Microbiology

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    Transcriptome profiling of bacterial responses to root exudates identifies genes involved in microbe-plant interactions

    G. Louise Mark, J. Maxwell Dow, Patrick D. Kiely, Hazel Higgins, Jill Haynes, Christine Baysse, Abdelhamid Abbas, Tara Foley, Ashley Franks, John Morrissey, and Fergal O'Gara

    PNAS November 29, 2005 102 (48) 17454-17459; https://doi.org/10.1073/pnas.0506407102
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    Negative regulation of Salmonella pathogenicity island 2 is required for contextual control of virulence during typhoid

    Brian K. Coombes, Mark E. Wickham, Michael J. Lowden, Nat F. Brown, and B. Brett Finlay

    PNAS November 29, 2005 102 (48) 17460-17465; https://doi.org/10.1073/pnas.0505401102
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    Streptococcal viability and diminished stress tolerance in mutants lacking the signal recognition particle pathway or YidC2

    Adnan Hasona, Paula J. Crowley, Celine M. Levesque, Richard W. Mair, Dennis G. Cvitkovitch, Arnold S. Bleiweis, and L. Jeannine Brady

    PNAS November 29, 2005 102 (48) 17466-17471; https://doi.org/10.1073/pnas.0508778102
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    The genome sequence of Clostridium botulinum type C neurotoxin-converting phage and the molecular mechanisms of unstable lysogeny

    Yoshihiko Sakaguchi, Tetsuya Hayashi, Ken Kurokawa, Keisuke Nakayama, Kenshiro Oshima, Yukako Fujinaga, Makoto Ohnishi, Eiichi Ohtsubo, Masahira Hattori, and Keiji Oguma

    PNAS November 29, 2005 102 (48) 17472-17477; https://doi.org/10.1073/pnas.0505503102

• Neuroscience

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    Experience induces structural and biochemical changes in the adult primate brain

    Yevgenia Kozorovitskiy, Charles G. Gross, Catherine Kopil, Lisa Battaglia, Meghan McBreen, Alexis M. Stranahan, and Elizabeth Gould

    PNAS November 29, 2005 102 (48) 17478-17482; https://doi.org/10.1073/pnas.0508817102
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    Concentration dynamics of nitric oxide in rat hippocampal subregions evoked by stimulation of the NMDA glutamate receptor

    Ana Ledo, Rui M. Barbosa, Greg A. Gerhardt, Enrique Cadenas, and João Laranjinha

    PNAS November 29, 2005 102 (48) 17483-17488; https://doi.org/10.1073/pnas.0503624102
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    Anxiolytic- and antidepressant-like profiles of the galanin-3 receptor (Gal₃) antagonists SNAP 37889 and SNAP 398299

    • From the Cover

    Chad J. Swanson, Thomas P. Blackburn, Xuexiang Zhang, Kang Zheng, Zhi-Qing David Xu, Tomas Hökfelt, Toni D. Wolinsky, Michael J. Konkel, Heidi Chen, Huailing Zhong, Mary W. Walker, Douglas A. Craig, Christophe P. G. Gerald, and Theresa A. Branchek

    PNAS November 29, 2005 102 (48) 17489-17494; https://doi.org/10.1073/pnas.0508970102

• Pharmacology

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    Crosstalk in G protein-coupled receptors: Changes at the transmembrane homodimer interface determine activation

    • From the Cover

    Wen Guo, Lei Shi, Marta Filizola, Harel Weinstein, and Jonathan A. Javitch

    PNAS November 29, 2005 102 (48) 17495-17500; https://doi.org/10.1073/pnas.0508950102
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    Leukotriene B₄ signaling through NF-κB-dependent BLT₁ receptors on vascular smooth muscle cells in atherosclerosis and intimal hyperplasia

    Magnus Bäck, De-xiu Bu, Robert Bränström, Yuri Sheikine, Zhong-Qun Yan, and Göran K. Hansson

    PNAS November 29, 2005 102 (48) 17501-17506; https://doi.org/10.1073/pnas.0505845102

• Physiology

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    The epithelial Ca²⁺ channel TRPV5 is essential for proper osteoclastic bone resorption

    Bram C. J. van der Eerden, Joost G. J. Hoenderop, Teun J. de Vries, Ton Schoenmaker, Cok J. Buurman, André G. Uitterlinden, Huibert A. P. Pols, René J. M. Bindels, and Johannes P. T. M. van Leeuwen

    PNAS November 29, 2005 102 (48) 17507-17512; https://doi.org/10.1073/pnas.0505789102
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    Albumin endocytosis in proximal tubule cells is modulated by angiotensin II through an AT₂ receptor-mediated protein kinase B activation

    Celso Caruso-Neves, Sang-Ho Kwon, and William B. Guggino

    PNAS November 29, 2005 102 (48) 17513-17518; https://doi.org/10.1073/pnas.0507255102
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    Myosin light chain kinase and myosin phosphorylation effect frequency-dependent potentiation of skeletal muscle contraction

    Gang Zhi, Jeffrey W. Ryder, Jian Huang, Peiguo Ding, Yue Chen, Yingming Zhao, Kristine E. Kamm, and James T. Stull

    PNAS November 29, 2005 102 (48) 17519-17524; https://doi.org/10.1073/pnas.0506846102

• Plant Biology

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    A rice-based edible vaccine expressing multiple T cell epitopes induces oral tolerance for inhibition of Th2-mediated IgE responses

    • From the Cover

    Hidenori Takagi, Takachika Hiroi, Lijun Yang, Yoshifumi Tada, Yoshikazu Yuki, Kaoru Takamura, Ryotaro Ishimitsu, Hideyuki Kawauchi, Hiroshi Kiyono, and Fumio Takaiwa

    PNAS November 29, 2005 102 (48) 17525-17530; https://doi.org/10.1073/pnas.0503428102

    See companion article:

    • This Week in PNAS

      - Nov 29, 2005
    • Transgenic rice for allergy immunotherapy

      - Nov 21, 2005
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    MINISEED3 (MINI3), a WRKY family gene, and HAIKU2 (IKU2), a leucine-rich repeat (LRR) KINASE gene, are regulators of seed size in Arabidopsis

    Ming Luo, Elizabeth S. Dennis, Frederic Berger, William James Peacock, and Abed Chaudhury

    PNAS November 29, 2005 102 (48) 17531-17536; https://doi.org/10.1073/pnas.0508418102

    See companion article:

    • This Week in PNAS

      - Nov 29, 2005
    • Control of seed size in plants

      - Dec 05, 2005