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Table of Contents
February 22, 2005; vol. 102 no. 8
In This Issue
Physical Sciences
Engineering
- You have accessUncovering transcriptional regulation of metabolism by using metabolic network topologyKiran Raosaheb Patil and Jens Nielsen
Mathematics
- You have accessCombinatorial theory of Macdonald polynomials I: Proof of Haglund's formula
- From the Cover
J. Haglund, M. Haiman, and N. Loehr
Biological Sciences
Applied Biological Sciences
- You have accessTailored catalysts for plant cell-wall degradation: Redesigning the exo/endo preference of Cellvibrio japonicus arabinanase 43AMark R. Proctor, Edward J. Taylor, Didier Nurizzo, Johan P. Turkenburg, Ruth M. Lloyd, Maria Vardakou, Gideon J. Davies, and Harry J. Gilbert
Biochemistry
- You have accessCellular transformation by the MSP58 oncogene is inhibited by its physical interaction with the PTEN tumor suppressor
- From the Cover
Koichi Okumura, Mujun Zhao, Ronald A. DePinho, Frank B. Furnari, and Webster K. CaveneeSee companion article:
- This Week in PNAS- Feb 22, 2005
- You have accessA critical role of helix 3–helix 5 interaction in steroid hormone receptor functionJunhui Zhang, Jessica Simisky, Francis T. F. Tsai, and David S. Geller
- You have accessSulfide binding is mediated by zinc ions discovered in the crystal structure of a hydrothermal vent tubeworm hemoglobinJason F. Flores, Charles R. Fisher, Susan L. Carney, Brian N. Green, John K. Freytag, Stephen W. Schaeffer, and William E. Royer Jr.
- You have accessDisulfide trapping to localize small-molecule agonists and antagonists for a G protein-coupled receptorElizabeth Buck and James A. Wells
- You have accessInterruption of ganglioside synthesis produces central nervous system degeneration and altered axon–glial interactionsTadashi Yamashita, Yun-Ping Wu, Roger Sandhoff, Norbert Werth, Hiroki Mizukami, Jessica M. Ellis, Jeffrey L. Dupree, Rudolf Geyer, Konrad Sandhoff, and Richard L. Proia
- You have accessInorganic polyphosphate in Dictyostelium discoideum: Influence on development, sporulation, and predationHaiyu Zhang, María R. Gómez-García, Michael R. W. Brown, and Arthur Kornberg
Biophysics
- You have accessSurviving heat shock: Control strategies for robustness and performanceH. El-Samad, H. Kurata, J. C. Doyle, C. A. Gross, and M. Khammash
See companion article:
- Understanding biology by reverse engineering the control- Mar 14, 2005
- You have accessThe carboxyl-terminal region of cyclic nucleotide-modulated channels is a gating ring, not a permeation pathJ. P. Johnson Jr. and William N. Zagotta
- You have accessSpecific collapse followed by slow hydrogen-bond formation of β-sheet in the folding of single-chain monellinTetsunari Kimura, Takanori Uzawa, Koichiro Ishimori, Isao Morishima, Satoshi Takahashi, Takashi Konno, Shuji Akiyama, and Tetsuro Fujisawa
- You have accessPolyproline and the “spectroscopic ruler” revisited with single-molecule fluorescenceBenjamin Schuler, Everett A. Lipman, Peter J. Steinbach, Michael Kumke, and William A. Eaton
Cell Biology
- You have accessClathrin-independent endocytosis of ubiquitinated cargos
- From the Cover
Sara Sigismund, Tanja Woelk, Claudia Puri, Elena Maspero, Carlo Tacchetti, Pietro Transidico, Pier Paolo Di Fiore, and Simona PoloSee companion article:
- You have accessThe association of epsin with ubiquitinated cargo along the endocytic pathway is negatively regulated by its interaction with clathrin
- From the Cover
Hong Chen and Pietro De CamilliSee companion article:
- You have accessCryo-electron tomography of vaccinia virusMarek Cyrklaff, Cristina Risco, Jose Jesús Fernández, Maria Victoria Jiménez, Mariano Estéban, Wolfgang Baumeister, and José L. Carrascosa
- You have accessNucleoplasmin regulates chromatin condensation during apoptosisZhigang Lu, Chuanmao Zhang, and Zhonghe Zhai
- You have accessInteraction of BIG2, a brefeldin A-inhibited guanine nucleotide-exchange protein, with exocyst protein Exo70Kai-Feng Xu, Xiaoyan Shen, Hewang Li, Gustavo Pacheco-Rodriguez, Joel Moss, and Martha Vaughan
- You have accessβ-Arrestins bind and decrease cell-surface abundance of the Na+/H+ exchanger NHE5 isoformElöd Z. Szabó, Masayuki Numata, Viktoria Lukashova, Pietro Iannuzzi, and John Orlowski
- You have accessMouse Na+/K+-ATPase β1-subunit has a K+-dependent cell adhesion activity for β-GlcNAc-terminating glycansNoriaki Kitamura, Masahiko Ikekita, Takeshi Sato, Yoshihiro Akimoto, Yasumaru Hatanaka, Hayato Kawakami, Mitsushi Inomata, and Kiyoshi Furukawa
- You have accessHomeodomain-interacting protein kinase-2 mediates CtBP phosphorylation and degradation in UV-triggered apoptosisQinghong Zhang, Amanda Nottke, and Richard H. Goodman
Developmental Biology
- You have accessPolar nuclear localization of H1T2, a histone H1 variant, required for spermatid elongation and DNA condensation during spermiogenesisIgor Martianov, Stefano Brancorsini, Raffaella Catena, Anne Gansmuller, Noora Kotaja, Martti Parvinen, Paolo Sassone-Corsi, and Irwin Davidson
- You have accessEarly onset of puberty and early ovarian failure in CYP7B1 knockout miceYoko Omoto, Richard Lathe, Margaret Warner, and Jan-Åke Gustafsson
- You have accessBursicon, the insect cuticle-hardening hormone, is a heterodimeric cystine knot protein that activates G protein-coupled receptor LGR2Ching-Wei Luo, Elizabeth M. Dewey, Satoko Sudo, John Ewer, Sheau Yu Hsu, Hans-Willi Honegger, and Aaron J. W. Hsueh
Ecology
- You have accessEcosystem recovery after climatic extremes enhanced by genotypic diversityThorsten B. H. Reusch, Anneli Ehlers, August Hämmerli, and Boris Worm
Evolution
- You have accessPositive selection of primate TRIM5α identifies a critical species-specific retroviral restriction domainSara L. Sawyer, Lily I. Wu, Michael Emerman, and Harmit S. Malik
See companion article:
- You have accessHeritability and genetic constraints of life-history trait evolution in preindustrial humansJenni E. Pettay, Loeske E. B. Kruuk, Jukka Jokela, and Virpi Lummaa
- You have accessSynthesis and degradation of dinoflagellate plastid-encoded psbA proteins are light-regulated, not circadian-regulatedYunling Wang, Lene Jensen, Peter Højrup, and David Morse
Genetics
- You have accessUncovering transcriptional regulation of metabolism by using metabolic network topologyKiran Raosaheb Patil and Jens Nielsen
- You have accessIdentification and analysis of alternative splicing events conserved in human and mouseGene W. Yeo, Eric Van Nostrand, Dirk Holste, Tomaso Poggio, and Christopher B. Burge
- You have accessMultiple homeostatic mechanisms in the control of P1 plasmid replicationNilangshu Das, Majda Valjavec-Gratian, Ashish N. Basuray, Richard A. Fekete, Peter P. Papp, Johan Paulsson, and Dhruba K. Chattoraj
- You have accessDissecting the PhoP regulatory network of Escherichia coli and Salmonella entericaIgor Zwir, Dongwoo Shin, Akinori Kato, Kunihiko Nishino, Tammy Latifi, Felix Solomon, Janelle M. Hare, Henry Huang, and Eduardo A. Groisman
- You have accessGenetic basis of variation in adenoma multiplicity in ApcMin/+Mom1S miceJackie Haines, Victoria Johnson, Kevin Pack, Nirosha Suraweera, Predrag Slijepcevic, Erik Cabuy, Margaret Coster, Mohammad Ilyas, Jennifer Wilding, Oliver Sieber, Walter Bodmer, Ian Tomlinson, and Andrew Silver
Immunology
- You have accessTNF receptor (TNFR)-associated factor (TRAF) 3 serves as an inhibitor of TRAF2/5-mediated activation of the noncanonical NF-κB pathway by TRAF-binding TNFRsJulia Hauer, Stephanie Püschner, Parameswaran Ramakrishnan, Ute Simon, Martina Bongers, Christine Federle, and Hartmut Engelmann
- You have accessLactobacilli activate human dendritic cells that skew T cells toward T helper 1 polarizationMansour Mohamadzadeh, Scott Olson, Warren V. Kalina, Gordon Ruthel, Gretchen L. Demmin, Kelly L. Warfield, Sina Bavari, and Todd R. Klaenhammer
- You have accessCharacterization of CD56–/CD16+ natural killer (NK) cells: A highly dysfunctional NK subset expanded in HIV-infected viremic individualsDomenico Mavilio, Gabriella Lombardo, Janet Benjamin, Diana Kim, Dean Follman, Emanuela Marcenaro, M. Angeline O'Shea, Audrey Kinter, Colin Kovacs, Alessandro Moretta, and Anthony S. Fauci
- You have accessThe induction of matrix metalloproteinase and cytokine expression in synovial fibroblasts stimulated with immune cell microparticlesJörg H. W. Distler, Astrid Jüngel, Lars C. Huber, Christian A. Seemayer, Charles F. Reich III, Renate E. Gay, Beat A. Michel, Adriano Fontana, Steffen Gay, David S. Pisetsky, and Oliver Distler
- You have accessT cells from epicutaneously immunized mice are prone to T cell receptor revisionMargaret S. Bynoe, Christophe Viret, Richard A. Flavell, and Charles A. Janeway Jr.
- You have accessT cell receptor (TCR) clustering in the immunological synapse integrates TCR and costimulatory signaling in selected T cellsBozidar Purtic, Lisa A. Pitcher, Nicolai S. C. van Oers, and Christoph Wülfing
- You have accessSelective blockade of inhibitory Fcγ receptor enables human dendritic cell maturation with IL-12p70 production and immunity to antibody-coated tumor cellsKavita M. Dhodapkar, Jacob L. Kaufman, Marc Ehlers, Devi K. Banerjee, Ezio Bonvini, Scott Koenig, Ralph M. Steinman, Jeffrey V. Ravetch, and Madhav V. Dhodapkar
Medical Sciences
- You have accessRole of the intestinal tight junction modulator zonulin in the pathogenesis of type I diabetes in BB diabetic-prone ratsTammara Watts, Irene Berti, Anna Sapone, Tania Gerarduzzi, Tarcisio Not, Ronald Zielke, and Alessio Fasano
- You have accessNear-infrared-emissive polymersomes: Self-assembled soft matter for in vivo optical imagingP. Peter Ghoroghchian, Paul R. Frail, Kimihiro Susumu, Dana Blessington, Aaron K. Brannan, Frank S. Bates, Britton Chance, Daniel A. Hammer, and Michael J. Therien
- You have accessEmbryonic pig liver, pancreas, and lung as a source for transplantation: Optimal organogenesis without teratoma depends on distinct time windowsSmadar Eventov-Friedman, Helena Katchman, Elias Shezen, Anna Aronovich, Dalit Tchorsh, Benjamin Dekel, Enrique Freud, and Yair Reisner
- You have accessFunction of endogenous inhibitors of angiogenesis as endothelium-specific tumor suppressorsMalin Sund, Yuki Hamano, Hikaru Sugimoto, Akulapalli Sudhakar, Mary Soubasakos, Udaya Yerramalla, Laura E. Benjamin, Jack Lawler, Mark Kieran, Amish Shah, and Raghu Kalluri
- You have accessVaccinia viruses with a serpin gene deletion and expressing IFN-γ induce potent immune responses without detectable replication in vivoFatema A. Legrand, Paulo H. Verardi, Kenneth S. Chan, Yue Peng, Leslie A. Jones, and Tilahun D. Yilma
- You have accessAltered vascular remodeling in fibulin-5-deficient mice reveals a role of fibulin-5 in smooth muscle cell proliferation and migrationJeffrey A. Spencer, Shelby L. Hacker, Elaine C. Davis, Robert P. Mecham, Russ H. Knutsen, Dean Y. Li, Robert D. Gerard, James A. Richardson, Eric N. Olson, and Hiromi Yanagisawa
- You have accessA shortened adeno-associated virus expression cassette for CFTR gene transfer to cystic fibrosis airway epitheliaLynda S. Ostedgaard, Tatiana Rokhlina, Philip H. Karp, Philip Lashmit, Sandra Afione, Michael Schmidt, Joseph Zabner, Mark F. Stinski, Jay A. Chiorini, and Michael J. Welsh
- You have accessCorrection of factor IX deficiency in mice by embryonic stem cells differentiated in vitroJeffrey H. Fair, Bruce A. Cairns, Michael A. LaPaglia, Montserrat Caballero, W. Andrew Pleasant, Seigo Hatada, Hyung-suk Kim, Tong Gui, Larysa Pevny, Anthony A. Meyer, Darrel W. Stafford, Oliver Smithies, and Jeffrey A. Frelinger
- You have accessKaryotypic “state” as a potential determinant for anticancer drug discoveryAnna V. Roschke, Samir Lababidi, Giovanni Tonon, Kristen S. Gehlhaus, Kimberly Bussey, John N. Weinstein, and Ilan R. Kirsch
- You have accessConcurrent suppression of hyperlipidemia and intestinal polyp formation by NO-1886, increasing lipoprotein lipase activity in Min miceNaoko Niho, Michihiro Mutoh, Mami Takahashi, Kazuhiko Tsutsumi, Takashi Sugimura, and Keiji Wakabayashi
- You have accessSyndromic patent ductus arteriosus: Evidence for haploinsufficient TFAP2B mutations and identification of a linked sleep disorderArya Mani, Jayaram Radhakrishnan, Anita Farhi, Khary S. Carew, Carole A. Warnes, Carol Nelson-Williams, Ronald W. Day, Barbara Pober, Matthew W. State, and Richard P. Lifton
Microbiology
- You have accessTetracycline analogue-regulated transgene expression in Plasmodium falciparum blood stages using Toxoplasma gondii transactivatorsMarkus Meissner, Efrosinia Krejany, Paul R. Gilson, Tania F. de Koning-Ward, Dominique Soldati, and Brendan S. Crabb
- You have accessControl of antiviral defenses through hepatitis C virus disruption of retinoic acid-inducible gene-I signalingEileen Foy, Kui Li, Rhea Sumpter Jr., Yueh-Ming Loo, Cynthia L. Johnson, Chunfu Wang, Penny Mar Fish, Mitsutoshi Yoneyama, Takashi Fujita, Stanley M. Lemon, and Michael Gale Jr.
- You have accessImmune evasion by hepatitis C virus NS3/4A protease-mediated cleavage of the Toll-like receptor 3 adaptor protein TRIFKui Li, Eileen Foy, Josephine C. Ferreon, Mitsuyasu Nakamura, Allan C. M. Ferreon, Masanori Ikeda, Stuart C. Ray, Michael Gale Jr., and Stanley M. Lemon
- You have accessReconstitution of papillomavirus E2-mediated plasmid maintenance in Saccharomyces cerevisiae by the Brd4 bromodomain proteinAngela R. Brannon, Julia A. Maresca, Jef D. Boeke, Munira A. Basrai, and Alison A. McBride
- You have accessComplete genome sequence of Vibrio fischeri: A symbiotic bacterium with pathogenic congenersE. G. Ruby, M. Urbanowski, J. Campbell, A. Dunn, M. Faini, R. Gunsalus, P. Lostroh, C. Lupp, J. McCann, D. Millikan, A. Schaefer, E. Stabb, A. Stevens, K. Visick, C. Whistler, and E. P. Greenberg
See companion article:
- This Week in PNAS- Feb 22, 2005
- You have accessEnhancer-binding proteins with a forkhead-associated domain and the σ54 regulon in Myxococcus xanthus fruiting body developmentLars Jelsbak, Michael Givskov, and Dale Kaiser
See companion article:
- You have accessEngineering N-linked protein glycosylation with diverse O antigen lipopolysaccharide structures in Escherichia coliMario F. Feldman, Michael Wacker, Marcela Hernandez, Paul G. Hitchen, Cristina L. Marolda, Michael Kowarik, Howard R. Morris, Anne Dell, Miguel A. Valvano, and Markus Aebi
- You have accessPlasmodium liver stage developmental arrest by depletion of a protein at the parasite–host interfaceAnn-Kristin Mueller, Nelly Camargo, Karine Kaiser, Cathy Andorfer, Ute Frevert, Kai Matuschewski, and Stefan H. I. Kappe
- You have accessBile acids induce cholera toxin expression in Vibrio cholerae in a ToxT-independent mannerDeborah T. Hung and John J. Mekalanos
Neuroscience
- You have accessβ-Arrestin2, interacting with phosphodiesterase 4, regulates synaptic release probability and presynaptic inhibition by opioidsAmyaouch Bradaïa, Frédérique Berton, Serge Ferrari, and Christian Lüscher
- You have accessHoney bees navigate according to a map-like spatial memoryRandolf Menzel, Uwe Greggers, Alan Smith, Sandra Berger, Robert Brandt, Sascha Brunke, Gesine Bundrock, Sandra Hülse, Tobias Plümpe, Frank Schaupp, Elke Schüttler, Silke Stach, Jan Stindt, Nicola Stollhoff, and Sebastian Watzl
- You have accessChronic nicotine administration exacerbates tau pathology in a transgenic model of Alzheimer's diseaseSalvatore Oddo, Antonella Caccamo, Kim N. Green, Kevin Liang, Levina Tran, Yiling Chen, Frances M. Leslie, and Frank M. LaFerla
- You have accessMelatonin induces the expression of gonadotropin-inhibitory hormone in the avian brainTakayoshi Ubuka, George E. Bentley, Kazuyoshi Ukena, John C. Wingfield, and Kazuyoshi Tsutsui
- You have accessAmyloid-β neurotoxicity is mediated by FISH adapter protein and ADAM12 metalloprotease activityNikolay L. Malinin, Sarah Wright, Peter Seubert, Dale Schenk, and Irene Griswold-Prenner
- You have accessTranscellular induction of neuropeptide Y expression by NT4 and BDNFMarcus J. Wirth, Silke Patz, and Petra Wahle
- You have accessCognitive deficit associated with cholinergic and nerve growth factor down-regulation in experimental allergic encephalomyelitis in ratsGiulia D'Intino, Michela Paradisi, Mercedes Fernandez, Alessandro Giuliani, Luigi Aloe, Luciana Giardino, and Laura Calzà
- You have accessShared and specific muscle synergies in natural motor behaviorsAndrea d'Avella and Emilio Bizzi
Pharmacology
- You have accessCrystal structure of the tandem GAF domains from a cyanobacterial adenylyl cyclase: Modes of ligand binding and dimerizationSergio E. Martinez, Sandra Bruder, Anita Schultz, Ning Zheng, Joachim E. Schultz, Joseph A. Beavo, and Jürgen U. Linder
- You have accessThe cyanobacterial tandem GAF domains from the cyaB2 adenylyl cyclase signal via both cAMP-binding sitesSandra Bruder, Jürgen U. Linder, Sergio E. Martinez, Ning Zheng, Joseph A. Beavo, and Joachim E. Schultz
- You have accessCB2 cannabinoid receptor activation produces antinociception by stimulating peripheral release of endogenous opioidsMohab M. Ibrahim, Frank Porreca, Josephine Lai, Phillip J. Albrecht, Frank L. Rice, Alla Khodorova, Gudarz Davar, Alexandros Makriyannis, Todd W. Vanderah, Heriberto P. Mata, and T. Philip Malan Jr.
See companion article:
- This Week in PNAS- Feb 22, 2005
Physiology
- You have accessCa2+ blinks: Rapid nanoscopic store calcium signalingDidier X. P. Brochet, Dongmei Yang, Alessandro Di Maio, W. Jonathan Lederer, Clara Franzini-Armstrong, and Heping Cheng
- You have accessLonger lifespan, altered metabolism, and stress resistance in Drosophila from ablation of cells making insulin-like ligandsSusan J. Broughton, Matthew D. W. Piper, Tomoatsu Ikeya, Timothy M. Bass, Jake Jacobson, Yasmine Driege, Pedro Martinez, Ernst Hafen, Dominic J. Withers, Sally J. Leevers, and Linda Partridge
- You have accessDifferential control of peripheral circadian rhythms by suprachiasmatic-dependent neural signalsHongnian Guo, Judy McKinley Brewer, Ameya Champhekar, Ruth B. S. Harris, and Eric L. Bittman
See companion article:
- This Week in PNAS- Feb 22, 2005
Plant Biology
- You have accessControl of seed mass and seed yield by the floral homeotic gene APETALA2K. Diane Jofuku, Pamela K. Omidyar, Zorana Gee, and Jack K. Okamuro
- You have accessControl of seed mass by APETALA2Masa-aki Ohto, Robert L. Fischer, Robert B. Goldberg, Kenzo Nakamura, and John J. Harada
- You have accessGenetic and chemical analyses of the action mechanisms of sirtinol in ArabidopsisXinhua Dai, Ken-ichiro Hayashi, Hiroshi Nozaki, Youfa Cheng, and Yunde Zhao
- You have accessRecruitment and interaction dynamics of plant penetration resistance components in a plasma membrane microdomainRiyaz A. Bhat, Marco Miklis, Elmon Schmelzer, Paul Schulze-Lefert, and Ralph Panstruga
See companion article:
- This Week in PNAS- Feb 22, 2005
- You have accessAntioxidants and photoprotection in a lichen as compared with its isolated symbiotic partnersIlse Kranner, W. John Cram, Margret Zorn, Sabine Wornik, Isao Yoshimura, Edith Stabentheiner, and Hartwig W. Pfeifhofer
- You have accessRoot-knot nematodes and bacterial Nod factors elicit common signal transduction events in Lotus japonicusRavisha R. Weerasinghe, David McK. Bird, and Nina S. Allen
Population Biology
- You have accessStrategic interactions in multi-institutional epidemics of antibiotic resistance
- From the Cover
David L. Smith, Simon A. Levin, and Ramanan LaxminarayanSee companion article:
Psychology
- You have accessSymmetry activates extrastriate visual cortex in human and nonhuman primatesYuka Sasaki, Wim Vanduffel, Tamara Knutsen, Christopher Tyler, and Roger Tootell
- You have accessPast trials influence perception of ambiguous motion quartets through pattern completionL. T. Maloney, M. F. Dal Martello, C. Sahm, and L. Spillmann
Commentaries
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