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Table of Contents

August 29, 2006; vol. 103 no. 35

This Week in PNAS

  • You have access
    In This Issue
    PNAS August 29, 2006 103 (35) 12953-12954; https://doi.org/10.1073/iti3506103

    See companion article:

    • The violation of the Stokes–Einstein relation in supercooled water
      - Aug 18, 2006
    • Myeloid lineage progenitors give rise to vascular endothelium
      - Aug 18, 2006
    • Effective countermeasure against poisoning by organophosphorus insecticides and nerve agents
      - Aug 16, 2006
    • Spontaneous and evoked synaptic rewiring in the neonatal neocortex
      - Aug 21, 2006
    • Annually reoccurring bacterial communities are predictable from ocean conditions
      - Aug 22, 2006

Commentaries

  • You have access
    Breakdown of the Stokes–Einstein relation in supercooled water
    Pradeep Kumar
    PNAS August 29, 2006 103 (35) 12955-12956; https://doi.org/10.1073/pnas.0605880103

    See companion article:

    • The violation of the Stokes–Einstein relation in supercooled water
      - Aug 18, 2006
  • You have access
    Unraveling the genetic basis of hybrid vigor
    James A. Birchler, Hong Yao, and Sivanandan Chudalayandi
    PNAS August 29, 2006 103 (35) 12957-12958; https://doi.org/10.1073/pnas.0605627103

    See companion article:

    • Overdominant quantitative trait loci for yield and fitness in tomato
      - Aug 22, 2006
  • You have access
    My O'Myeloid, a tale of two lineages
    Ann C. Zovein and M. Luisa Iruela-Arispe
    PNAS August 29, 2006 103 (35) 12959-12960; https://doi.org/10.1073/pnas.0606018103

    See companion article:

    • Myeloid lineage progenitors give rise to vascular endothelium
      - Aug 18, 2006
  • You have access
    In search of an effective obesity treatment: A shot in the dark or a shot in the arm?
    Jeffrey M. Zigman and Joel K. Elmquist
    PNAS August 29, 2006 103 (35) 12961-12962; https://doi.org/10.1073/pnas.0605959103

    See companion article:

    • Vaccination against weight gain
      - Aug 04, 2006

Profile

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    Profile of Edward I. Solomon
    Nick Zagorski
    PNAS August 29, 2006 103 (35) 12963-12965; https://doi.org/10.1073/pnas.0606007103

    See companion article:

    • Spectroscopic and electronic structure studies of aromatic electrophilic attack and hydrogen-atom abstraction by non-heme iron enzymes
      - Aug 18, 2006

Physical Sciences

  • Applied Physical Sciences

    • You have access
      The violation of the Stokes–Einstein relation in supercooled water
      Sow-Hsin Chen, Francesco Mallamace, Chung-Yuan Mou, Matteo Broccio, Carmelo Corsaro, Antonio Faraone, and Li Liu
      PNAS August 29, 2006 103 (35) 12974-12978; https://doi.org/10.1073/pnas.0603253103

      See companion article:

      • Breakdown of the Stokes–Einstein relation in supercooled water
        - Aug 22, 2006
      • In This Issue
        - Aug 29, 2006
    • You have access
      Single-molecule mechanics of mussel adhesion
      Haeshin Lee, Norbert F. Scherer, and Phillip B. Messersmith
      PNAS August 29, 2006 103 (35) 12999-13003; https://doi.org/10.1073/pnas.0605552103
    • You have access
      Swimming Paramecium in magnetically simulated enhanced, reduced, and inverted gravity environments
      Karine Guevorkian and James M. Valles Jr.
      PNAS August 29, 2006 103 (35) 13051-13056; https://doi.org/10.1073/pnas.0601839103
  • Chemistry

    • You have access
      Spectroscopic and electronic structure studies of aromatic electrophilic attack and hydrogen-atom abstraction by non-heme iron enzymes
      • Inaugural Article
      Michael L. Neidig, Andrea Decker, Oliver W. Choroba, Fanglu Huang, Michael Kavana, Graham R. Moran, Jonathan B. Spencer, and Edward I. Solomon
      PNAS August 29, 2006 103 (35) 12966-12973; https://doi.org/10.1073/pnas.0605067103

      See companion article:

      • Profile of Edward I. Solomon
        - Aug 21, 2006
    • You have access
      Amplification of enantiomeric concentrations under credible prebiotic conditions
      Ronald Breslow and Mindy S. Levine
      PNAS August 29, 2006 103 (35) 12979-12980; https://doi.org/10.1073/pnas.0605863103
  • Environmental Sciences

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      A climate-change risk analysis for world ecosystems
      Marko Scholze, Wolfgang Knorr, Nigel W. Arnell, and I. Colin Prentice
      PNAS August 29, 2006 103 (35) 13116-13120; https://doi.org/10.1073/pnas.0601816103
  • Physics

    • You have access
      Scale-invariant structure of strongly conserved sequence in genomic intersections and alignments
      William Salerno, Paul Havlak, and Jonathan Miller
      PNAS August 29, 2006 103 (35) 13121-13125; https://doi.org/10.1073/pnas.0605735103

Biological Sciences

  • Agricultural Sciences

    • Open Access
      Overdominant quantitative trait loci for yield and fitness in tomato
      • From the Cover
      Yaniv Semel, Jonathan Nissenbaum, Naama Menda, Michael Zinder, Uri Krieger, Noa Issman, Tzili Pleban, Zachary Lippman, Amit Gur, and Dani Zamir
      PNAS August 29, 2006 103 (35) 12981-12986; https://doi.org/10.1073/pnas.0604635103

      See companion article:

      • Unraveling the genetic basis of hybrid vigor
        - Aug 22, 2006
    • You have access
      Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice
      Honghong Hu, Mingqiu Dai, Jialing Yao, Benze Xiao, Xianghua Li, Qifa Zhang, and Lizhong Xiong
      PNAS August 29, 2006 103 (35) 12987-12992; https://doi.org/10.1073/pnas.0604882103
  • Applied Biological Sciences

    • You have access
      Adeno-associated virus serotype 9 vectors transduce murine alveolar and nasal epithelia and can be readministered
      Maria P. Limberis and James M. Wilson
      PNAS August 29, 2006 103 (35) 12993-12998; https://doi.org/10.1073/pnas.0601433103
  • Biochemistry

    • You have access
      Single-molecule mechanics of mussel adhesion
      Haeshin Lee, Norbert F. Scherer, and Phillip B. Messersmith
      PNAS August 29, 2006 103 (35) 12999-13003; https://doi.org/10.1073/pnas.0605552103
    • Open Access
      Quantification of protein half-lives in the budding yeast proteome
      Archana Belle, Amos Tanay, Ledion Bitincka, Ron Shamir, and Erin K. O’Shea
      PNAS August 29, 2006 103 (35) 13004-13009; https://doi.org/10.1073/pnas.0605420103
    • You have access
      Molecular basis for the herbicide resistance of Roundup Ready crops
      Todd Funke, Huijong Han, Martha L. Healy-Fried, Markus Fischer, and Ernst Schönbrunn
      PNAS August 29, 2006 103 (35) 13010-13015; https://doi.org/10.1073/pnas.0603638103
    • You have access
      Structure of archaeal translational initiation factor 2 βγ–GDP reveals significant conformational change of the β-subunit and switch 1 region
      Masaaki Sokabe, Min Yao, Naoki Sakai, Shingo Toya, and Isao Tanaka
      PNAS August 29, 2006 103 (35) 13016-13021; https://doi.org/10.1073/pnas.0604165103
    • You have access
      Stable stem cell commitment to the adipocyte lineage by inhibition of DNA methylation: Role of the BMP-4 gene
      Robert R. Bowers, Jae Woo Kim, Tamara C. Otto, and M. Daniel Lane
      PNAS August 29, 2006 103 (35) 13022-13027; https://doi.org/10.1073/pnas.0605789103
    • Open Access
      Structural basis for the inhibition of insulin-like growth factors by insulin-like growth factor-binding proteins
      Tomasz Sitar, Grzegorz M. Popowicz, Igor Siwanowicz, Robert Huber, and Tad A. Holak
      PNAS August 29, 2006 103 (35) 13028-13033; https://doi.org/10.1073/pnas.0605652103
    • Open Access
      Kelch-repeat proteins interacting with the Gα protein Gpa2 bypass adenylate cyclase for direct regulation of protein kinase A in yeast
      Tom Peeters, Wendy Louwet, Ruud Geladé, David Nauwelaers, Johan M. Thevelein, and Matthias Versele
      PNAS August 29, 2006 103 (35) 13034-13039; https://doi.org/10.1073/pnas.0509644103
  • Biophysics

    • You have access
      Spectroscopic and electronic structure studies of aromatic electrophilic attack and hydrogen-atom abstraction by non-heme iron enzymes
      • Inaugural Article
      Michael L. Neidig, Andrea Decker, Oliver W. Choroba, Fanglu Huang, Michael Kavana, Graham R. Moran, Jonathan B. Spencer, and Edward I. Solomon
      PNAS August 29, 2006 103 (35) 12966-12973; https://doi.org/10.1073/pnas.0605067103

      See companion article:

      • Profile of Edward I. Solomon
        - Aug 21, 2006
    • You have access
      Precise adaptation in bacterial chemotaxis through “assistance neighborhoods”
      Robert G. Endres and Ned S. Wingreen
      PNAS August 29, 2006 103 (35) 13040-13044; https://doi.org/10.1073/pnas.0603101103
    • Open Access
      Surface-modulated motion switch: Capture and release of iron–sulfur protein in the cytochrome bc1 complex
      Lothar Esser, Xing Gong, Shaoqing Yang, Linda Yu, Chang-An Yu, and Di Xia
      PNAS August 29, 2006 103 (35) 13045-13050; https://doi.org/10.1073/pnas.0601149103
    • You have access
      Swimming Paramecium in magnetically simulated enhanced, reduced, and inverted gravity environments
      Karine Guevorkian and James M. Valles Jr.
      PNAS August 29, 2006 103 (35) 13051-13056; https://doi.org/10.1073/pnas.0601839103
    • You have access
      The role of hydrophobic interactions in initiation and propagation of protein folding
      H. Jane Dyson, Peter E. Wright, and Harold A. Scheraga
      PNAS August 29, 2006 103 (35) 13057-13061; https://doi.org/10.1073/pnas.0605504103
    • You have access
      Regulation of outside-in signaling and affinity by the β2 I domain of integrin αLβ2
      JianFeng Chen, Wei Yang, Minsoo Kim, Christopher V. Carman, and Timothy A. Springer
      PNAS August 29, 2006 103 (35) 13062-13067; https://doi.org/10.1073/pnas.0605666103
  • Cell Biology

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      Human cytomegalovirus-encoded chemokine receptor US28 promotes tumorigenesis
      David Maussang, Dennis Verzijl, Marijke van Walsum, Rob Leurs, Jens Holl, Olivier Pleskoff, Detlef Michel, Guus A. M. S. van Dongen, and Martine J. Smit
      PNAS August 29, 2006 103 (35) 13068-13073; https://doi.org/10.1073/pnas.0604433103
    • Open Access
      A repressor complex, AP4 transcription factor and geminin, negatively regulates expression of target genes in nonneuronal cells
      Mi-Young Kim, Byung Chul Jeong, Ji Hee Lee, Hae Jin Kee, Hyun Kook, Nack Sung Kim, Yoon Ha Kim, Jong-Keun Kim, Kyu Youn Ahn, and Kyung Keun Kim
      PNAS August 29, 2006 103 (35) 13074-13079; https://doi.org/10.1073/pnas.0601915103
    • You have access
      The last eukaryotic common ancestor (LECA): Acquisition of cytoskeletal motility from aerotolerant spirochetes in the Proterozoic Eon
      Lynn Margulis, Michael Chapman, Ricardo Guerrero, and John Hall
      PNAS August 29, 2006 103 (35) 13080-13085; https://doi.org/10.1073/pnas.0604985103
    • You have access
      Dynamic redox control of NF-κB through glutaredoxin-regulated S-glutathionylation of inhibitory κB kinase β
      Niki L. Reynaert, Albert van der Vliet, Amy S. Guala, Toby McGovern, Milena Hristova, Cristen Pantano, Nicholas H. Heintz, John Heim, Ye-Shih Ho, Dwight E. Matthews, Emiel F. M. Wouters, and Yvonne M. W. Janssen-Heininger
      PNAS August 29, 2006 103 (35) 13086-13091; https://doi.org/10.1073/pnas.0603290103
    • You have access
      Heat-shock transcription factor (HSF)-1 pathway required for Caenorhabditis elegans immunity
      Varsha Singh and Alejandro Aballay
      PNAS August 29, 2006 103 (35) 13092-13097; https://doi.org/10.1073/pnas.0604050103
  • Developmental Biology

    • Open Access
      Spermatozoa and spermatids retrieved from frozen reproductive organs or frozen whole bodies of male mice can produce normal offspring
      Narumi Ogonuki, Keiji Mochida, Hiromi Miki, Kimiko Inoue, Martin Fray, Takamasa Iwaki, Kazuo Moriwaki, Yuichi Obata, Kazuto Morozumi, Ryuzo Yanagimachi, and Atsuo Ogura
      PNAS August 29, 2006 103 (35) 13098-13103; https://doi.org/10.1073/pnas.0605755103
  • Ecology

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      Annually reoccurring bacterial communities are predictable from ocean conditions
      Jed A. Fuhrman, Ian Hewson, Michael S. Schwalbach, Joshua A. Steele, Mark V. Brown, and Shahid Naeem
      PNAS August 29, 2006 103 (35) 13104-13109; https://doi.org/10.1073/pnas.0602399103

      See companion article:

      • In This Issue
        - Aug 29, 2006
  • Environmental Sciences

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      Plague dynamics are driven by climate variation
      Nils Chr. Stenseth, Noelle I. Samia, Hildegunn Viljugrein, Kyrre Linné Kausrud, Mike Begon, Stephen Davis, Herwig Leirs, V. M. Dubyanskiy, Jan Esper, Vladimir S. Ageyev, Nikolay L. Klassovskiy, Sergey B. Pole, and Kung-Sik Chan
      PNAS August 29, 2006 103 (35) 13110-13115; https://doi.org/10.1073/pnas.0602447103
    • You have access
      A climate-change risk analysis for world ecosystems
      Marko Scholze, Wolfgang Knorr, Nigel W. Arnell, and I. Colin Prentice
      PNAS August 29, 2006 103 (35) 13116-13120; https://doi.org/10.1073/pnas.0601816103
  • Evolution

    • You have access
      The last eukaryotic common ancestor (LECA): Acquisition of cytoskeletal motility from aerotolerant spirochetes in the Proterozoic Eon
      Lynn Margulis, Michael Chapman, Ricardo Guerrero, and John Hall
      PNAS August 29, 2006 103 (35) 13080-13085; https://doi.org/10.1073/pnas.0604985103
    • You have access
      Scale-invariant structure of strongly conserved sequence in genomic intersections and alignments
      William Salerno, Paul Havlak, and Jonathan Miller
      PNAS August 29, 2006 103 (35) 13121-13125; https://doi.org/10.1073/pnas.0605735103
    • Open Access
      The cyanobacterial genome core and the origin of photosynthesis
      Armen Y. Mulkidjanian, Eugene V. Koonin, Kira S. Makarova, Sergey L. Mekhedov, Alexander Sorokin, Yuri I. Wolf, Alexis Dufresne, Frédéric Partensky, Henry Burd, Denis Kaznadzey, Robert Haselkorn, and Michael Y. Galperin
      PNAS August 29, 2006 103 (35) 13126-13131; https://doi.org/10.1073/pnas.0605709103
  • Immunology

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      A2A adenosine receptor protects tumors from antitumor T cells
      Akio Ohta, Elieser Gorelik, Simon J. Prasad, Franca Ronchese, Dmitriy Lukashev, Michael K. K. Wong, Xiaojun Huang, Sheila Caldwell, Kebin Liu, Patrick Smith, Jiang-Fan Chen, Edwin K. Jackson, Sergey Apasov, Scott Abrams, and Michail Sitkovsky
      PNAS August 29, 2006 103 (35) 13132-13137; https://doi.org/10.1073/pnas.0605251103
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      OX40 ligand shuts down IL-10-producing regulatory T cells
      Tomoki Ito, Yui-Hsi Wang, Omar Duramad, Shino Hanabuchi, Olivia A. Perng, Michel Gilliet, F. Xiao-Feng Qin, and Yong-Jun Liu
      PNAS August 29, 2006 103 (35) 13138-13143; https://doi.org/10.1073/pnas.0603107103
    • You have access
      Direct stimulation of T lymphocytes by immunosomes: Virus-like particles decorated with T cell receptor/CD3 ligands plus costimulatory molecules
      Sophia V. Derdak, Hans J. Kueng, Victoria M. Leb, Alina Neunkirchner, Klaus G. Schmetterer, Edith Bielek, Otto Majdic, Walter Knapp, Brian Seed, and Winfried F. Pickl
      PNAS August 29, 2006 103 (35) 13144-13149; https://doi.org/10.1073/pnas.0602283103
  • Medical Sciences

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      Coactosin-like protein supports 5-lipoxygenase enzyme activity and up-regulates leukotriene A4 production
      Marija Rakonjac, Lutz Fischer, Patrick Provost, Oliver Werz, Dieter Steinhilber, Bengt Samuelsson, and Olof Rådmark
      PNAS August 29, 2006 103 (35) 13150-13155; https://doi.org/10.1073/pnas.0605150103
    • You have access
      Myeloid lineage progenitors give rise to vascular endothelium
      • From the Cover
      Alexis S. Bailey, Holger Willenbring, Shuguang Jiang, Daniel A. Anderson, David A. Schroeder, Melissa H. Wong, Markus Grompe, and William H. Fleming
      PNAS August 29, 2006 103 (35) 13156-13161; https://doi.org/10.1073/pnas.0604203103

      See companion article:

      • In This Issue
        - Aug 29, 2006
      • My O'Myeloid, a tale of two lineages
        - Aug 21, 2006
    • Open Access
      Estrogen receptor (ER)-β isoforms: A key to understanding ER-β signaling
      Yuet-Kin Leung, Paul Mak, Sazzad Hassan, and Shuk-Mei Ho
      PNAS August 29, 2006 103 (35) 13162-13167; https://doi.org/10.1073/pnas.0605676103
    • You have access
      Side population in adult murine epidermis exhibits phenotypic and functional characteristics of keratinocyte stem cells
      Richard P. Redvers, Amy Li, and Pritinder Kaur
      PNAS August 29, 2006 103 (35) 13168-13173; https://doi.org/10.1073/pnas.0602579103
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      Synergy between immune cells and adult neural stem/progenitor cells promotes functional recovery from spinal cord injury
      Yaniv Ziv, Hila Avidan, Stefano Pluchino, Gianvito Martino, and Michal Schwartz
      PNAS August 29, 2006 103 (35) 13174-13179; https://doi.org/10.1073/pnas.0603747103
    • Open Access
      Alveolar epithelial cell mesenchymal transition develops in vivo during pulmonary fibrosis and is regulated by the extracellular matrix
      Kevin K. Kim, Matthias C. Kugler, Paul J. Wolters, Liliane Robillard, Michael G. Galvez, Alexis N. Brumwell, Dean Sheppard, and Harold A. Chapman
      PNAS August 29, 2006 103 (35) 13180-13185; https://doi.org/10.1073/pnas.0605669103
  • Microbiology

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      A proteomic study of Methylobacterium extorquens reveals a response regulator essential for epiphytic growth
      Benjamin Gourion, Michel Rossignol, and Julia A. Vorholt
      PNAS August 29, 2006 103 (35) 13186-13191; https://doi.org/10.1073/pnas.0603530103
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      Apicoplast fatty acid synthesis is essential for organelle biogenesis and parasite survival in Toxoplasma gondii
      Jolly Mazumdar, Emma H. Wilson, Kate Masek, Christopher A. Hunter, and Boris Striepen
      PNAS August 29, 2006 103 (35) 13192-13197; https://doi.org/10.1073/pnas.0603391103
  • Neuroscience

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      Evidence for stroke-induced neurogenesis in the human brain
      Kunlin Jin, Xiaomei Wang, Lin Xie, Xiao Ou Mao, Wei Zhu, Yin Wang, Jianfeng Shen, Ying Mao, Surita Banwait, and David A. Greenberg
      PNAS August 29, 2006 103 (35) 13198-13202; https://doi.org/10.1073/pnas.0603512103
    • You have access
      An internally controlled peripheral biomarker for Alzheimer’s disease: Erk1 and Erk2 responses to the inflammatory signal bradykinin
      Tapan K. Khan and Daniel L. Alkon
      PNAS August 29, 2006 103 (35) 13203-13207; https://doi.org/10.1073/pnas.0605411103
    • You have access
      Transgenic brain-derived neurotrophic factor expression causes both anxiogenic and antidepressant effects
      Arvind Govindarajan, B. S. Shankaranarayana Rao, Deepti Nair, Mimi Trinh, Nadya Mawjee, Susumu Tonegawa, and Sumantra Chattarji
      PNAS August 29, 2006 103 (35) 13208-13213; https://doi.org/10.1073/pnas.0605180103
    • You have access
      Spontaneous and evoked synaptic rewiring in the neonatal neocortex
      • From the Cover
      Jean-Vincent Le Bé and Henry Markram
      PNAS August 29, 2006 103 (35) 13214-13219; https://doi.org/10.1073/pnas.0604691103

      See companion article:

      • In This Issue
        - Aug 29, 2006
  • Pharmacology

    • Open Access
      Effective countermeasure against poisoning by organophosphorus insecticides and nerve agents
      Edson X. Albuquerque, Edna F. R. Pereira, Yasco Aracava, William P. Fawcett, Maristela Oliveira, William R. Randall, Tracey A. Hamilton, Robert K. Kan, James A. Romano Jr., and Michael Adler
      PNAS August 29, 2006 103 (35) 13220-13225; https://doi.org/10.1073/pnas.0605370103

      See companion article:

      • In This Issue
        - Aug 29, 2006
      • Overcoming inhibitions
        - Aug 28, 2006
  • Physiology

    • You have access
      Vaccination against weight gain
      • From the Cover
      Eric P. Zorrilla, Shinichi Iwasaki, Jason A. Moss, Jason Chang, Jonathan Otsuji, Koki Inoue, Michael M. Meijler, and Kim D. Janda
      PNAS August 29, 2006 103 (35) 13226-13231; https://doi.org/10.1073/pnas.0605376103

      See companion article:

      • In search of an effective obesity treatment: A shot in the dark or a shot in the arm?
        - Aug 21, 2006
    • You have access
      Local subplasma membrane Ca2+ signals detected by a tethered Ca2+ sensor
      Moo Yeol Lee, Hong Song, Junichi Nakai, Masamichi Ohkura, Michael I. Kotlikoff, Stephen P. Kinsey, Vera A. Golovina, and Mordecai P. Blaustein
      PNAS August 29, 2006 103 (35) 13232-13237; https://doi.org/10.1073/pnas.0605757103
  • Plant Biology

    • Open Access
      PEAPOD regulates lamina size and curvature in Arabidopsis
      Derek W. R. White
      PNAS August 29, 2006 103 (35) 13238-13243; https://doi.org/10.1073/pnas.0604349103
    • You have access
      Partially redundant functions of two SET-domain polycomb-group proteins in controlling initiation of seed development in Arabidopsis
      Dongfang Wang, Mark D. Tyson, Shawn S. Jackson, and Ramin Yadegari
      PNAS August 29, 2006 103 (35) 13244-13249; https://doi.org/10.1073/pnas.0605551103
    • You have access
      Non-cell-autonomous rescue of anaphase-promoting complex function revealed by mosaic analysis of HOBBIT, an Arabidopsis CDC27 homolog
      Olivier Serralbo, José Manuel Pérez-Pérez, Renze Heidstra, and Ben Scheres
      PNAS August 29, 2006 103 (35) 13250-13255; https://doi.org/10.1073/pnas.0602410103
  • Psychology

    • Open Access
      Transcranial magnetic stimulation of the visual cortex induces somatotopically organized qualia in blind subjects
      Ron Kupers, Arnaud Fumal, Alain Maertens de Noordhout, Albert Gjedde, Jean Schoenen, and Maurice Ptito
      PNAS August 29, 2006 103 (35) 13256-13260; https://doi.org/10.1073/pnas.0602925103
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