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Research Article

Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system

Fumio Inagaki, Marcel M. M. Kuypers, Urumu Tsunogai, Jun-ichiro Ishibashi, Ko-ichi Nakamura, Tina Treude, Satoru Ohkubo, Miwako Nakaseama, Kaul Gena, Hitoshi Chiba, Hisako Hirayama, Takuro Nunoura, Ken Takai, Bo B. Jørgensen, Koki Horikoshi, and Antje Boetius
PNAS September 19, 2006 103 (38) 14164-14169; https://doi.org/10.1073/pnas.0606083103
Fumio Inagaki
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  • For correspondence: inagaki@jamstec.go.jp
Marcel M. M. Kuypers
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Urumu Tsunogai
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Jun-ichiro Ishibashi
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Ko-ichi Nakamura
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Tina Treude
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Satoru Ohkubo
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Miwako Nakaseama
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Kaul Gena
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Hitoshi Chiba
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Hisako Hirayama
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Takuro Nunoura
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Ken Takai
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Bo B. Jørgensen
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Koki Horikoshi
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Antje Boetius
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  1. Communicated by Norman H. Sleep, Stanford University, Stanford, CA, July 21, 2006 (received for review March 10, 2006)

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Article Information

vol. 103 no. 38 14164-14169
DOI: 
https://doi.org/10.1073/pnas.0606083103
PubMed: 
16959888

Published By: 
National Academy of Sciences
Print ISSN: 
0027-8424
Online ISSN: 
1091-6490
History: 
  • Published in issue September 19, 2006.
  • Published first September 7, 2006.

Copyright & Usage: 
© 2006 by The National Academy of Sciences of the USA

Author Information

  1. Fumio Inagaki * , † , ‡ ,
  2. Marcel M. M. Kuypers † ,
  3. Urumu Tsunogai § ,
  4. Jun-ichiro Ishibashi ¶ ,
  5. Ko-ichi Nakamura ‖ ,
  6. Tina Treude † ,
  7. Satoru Ohkubo § ,
  8. Miwako Nakaseama ¶ ,
  9. Kaul Gena **,
  10. Hitoshi Chiba **,
  11. Hisako Hirayama *,
  12. Takuro Nunoura *,
  13. Ken Takai *,
  14. Bo B. Jørgensen † ,
  15. Koki Horikoshi *, and
  16. Antje Boetius †
  1. *Subground Animalcule Retrieval (SUGAR) Program, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka 237-0061, Japan;
  2. †Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany;
  3. §Department of Earth and Planetary Sciences, Graduate School of Science, Hokkaido University, Sapporo 060-0810, Japan;
  4. ¶Department of Earth and Planetary Sciences, Faculty of Sciences, Kyushu University, Fukuoka 812-8581, Japan;
  5. ‖Institute of Geology and Geoinformation, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba 305-8567, Japan; and
  6. **Department of Earth Science, Okayama University, Okayama 700-8530, Japan
  1. Communicated by Norman H. Sleep, Stanford University, Stanford, CA, July 21, 2006 (received for review March 10, 2006)

Footnotes

  • ‡To whom correspondence should be addressed. E-mail: inagaki{at}jamstec.go.jp
  • Author contributions: F.I., B.B.J., K.H., and A.B. designed research; F.I., M.M.M.K., U.T., J.-i.I., K.-i.N., T.T., S.O., M.N., K.G., H.C., H.H., T.N., K.T., and A.B. performed research; F.I., M.M.M.K., U.T., J.-i.I., K.-i.N., T.T., S.O., M.N., K.G., H.C., and A.B. analyzed data; and F.I., M.M.M.K., and A.B. wrote the paper.

  • Conflict of interest statement: No conflicts declared.

  • Data deposition: The 16S rRNA, mcrA, and cbbL gene sequences reported in this paper have been deposited in the DNA Data Bank of Japan/European Molecular Biology Laboratory/GenBank databases (accession nos. AB252422–AB252455).

  • See Commentary on page 13903.

  • Abbreviation:
    AOM,
    anaerobic oxidation of methane.
  • © 2006 by The National Academy of Sciences of the USA

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Article usage: September 2006 to January 2021

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Sep 20062086423624
Oct 2006367115166
Nov 20061976078
Dec 2006921836
Total 20062742616904
Jan 2007932849
Feb 2007852948
Mar 2007694149
Apr 2007654658
May 2007118163167
Jun 2007422433
Jul 2007552830
Aug 2007291718
Sep 2007563034
Oct 2007555754
Nov 2007553650
Dec 2007231324
Total 2007745512614
Jan 2008312636
Feb 2008472533
Mar 2008553443
Apr 2008542041
May 2008145136105
Jun 2008553759
Jul 20081071720
Aug 2008782631
Sep 2008952738
Oct 20081141438
Nov 20081652449
Dec 2008771230
Total 20081023398523
Jan 2009981622
Feb 20091122030
Mar 20091073027
Apr 2009952433
May 2009741926
Jun 20091074031
Jul 2009922934
Aug 2009651240
Sep 2009851842
Oct 2009891830
Nov 2009762018
Dec 2009781224
Total 20091078258357
Jan 2010892124
Feb 2010601821
Mar 20101302045
Apr 2010752227
May 2010643326
Jun 2010502721
Jul 2010531616
Aug 2010571420
Sep 2010622322
Oct 2010831919
Nov 2010702633
Dec 2010581913
Total 2010851258287
Jan 2011732225
Feb 2011492318
Mar 2011782422
Apr 2011611026
May 2011481214
Jun 2011441123
Jul 2011431111
Aug 2011611021
Sep 2011801018
Oct 2011821325
Nov 2011671315
Dec 2011711020
Total 2011757169238
Jan 201264815
Feb 201262720
Mar 201282614
Apr 20121101519
May 2012441212
Jun 201249615
Jul 2012411910
Aug 201265817
Sep 2012511116
Oct 2012442513
Nov 201250517
Dec 201239149
Total 2012701136177
Jan 2013711014
Feb 201355817
Mar 2013651222
Apr 201372821
May 20138358
Jun 20135086
Jul 20134749
Aug 201389714
Sep 20134627
Oct 2013771013
Nov 20134217
Dec 201377610
Total 201377481148
Jan 201466119
Feb 201456211
Mar 2014361414
Apr 2014631114
May 2014681411
Jun 201469129
Jul 2014541010
Aug 2014451711
Sep 2014702110
Oct 201486257
Nov 2014118129
Dec 2014136139
Total 2014867162124
Jan 2015953715
Feb 2015491412
Mar 201560118
Apr 201552834
May 201552307
Jun 2015663125
Jul 201527139
Aug 2015481010
Sep 2015105639
Oct 201559108
Nov 20155798
Dec 20151141910
Total 2015784255155
Jan 201663615
Feb 2016481316
Mar 2016841920
Apr 201645798
May 201634265
Jun 2016382413
Jul 201641104
Aug 201638114
Sep 2016961914
Oct 2016681711
Nov 20166196
Dec 2016552114
Total 2016671254130
Jan 2017212512
Feb 2017421410
Mar 201746155
Apr 201744155
May 2017521721
Jun 2017561811
Jul 2017532610
Aug 2017482210
Sep 20171863021
Oct 2017715011
Nov 2017503511
Dec 201759278
Total 2017728294135
Jan 2018312238
Feb 2018408312
Mar 2018638516
Apr 20185412511
May 20187810017
Jun 201844654
Jul 2018647816
Aug 2018386011
Sep 201855579
Oct 2018107114
Nov 2018129318
Dec 201896511
Total 20184981105147
Jan 201913669
Feb 201910826
Mar 201938115
Apr 2019117420
May 201911517
Jun 2019144813
Jul 2019205222
Aug 2019284015
Sep 201920466
Oct 2019167810
Nov 2019216914
Dec 2019653125
Total 2019173740262
Jan 2020206860
Feb 2020168117
Mar 2020217617
Apr 2020115012
May 202097013
Jun 202035419
Jul 20203439
Aug 2020114614
Sep 20205838
Oct 20201511632
Nov 20201210941
Dec 2020206713
Total 2020146863255
Jan 202193210
Total 202193210
Total1254761334466
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Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system
Fumio Inagaki, Marcel M. M. Kuypers, Urumu Tsunogai, Jun-ichiro Ishibashi, Ko-ichi Nakamura, Tina Treude, Satoru Ohkubo, Miwako Nakaseama, Kaul Gena, Hitoshi Chiba, Hisako Hirayama, Takuro Nunoura, Ken Takai, Bo B. Jørgensen, Koki Horikoshi, Antje Boetius
Proceedings of the National Academy of Sciences Sep 2006, 103 (38) 14164-14169; DOI: 10.1073/pnas.0606083103

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Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system
Fumio Inagaki, Marcel M. M. Kuypers, Urumu Tsunogai, Jun-ichiro Ishibashi, Ko-ichi Nakamura, Tina Treude, Satoru Ohkubo, Miwako Nakaseama, Kaul Gena, Hitoshi Chiba, Hisako Hirayama, Takuro Nunoura, Ken Takai, Bo B. Jørgensen, Koki Horikoshi, Antje Boetius
Proceedings of the National Academy of Sciences Sep 2006, 103 (38) 14164-14169; DOI: 10.1073/pnas.0606083103
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Proceedings of the National Academy of Sciences: 103 (38)
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