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Table of Contents

May 13, 2008; vol. 105 no. 19

This Week in PNAS

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    In This Issue
    PNAS May 13, 2008 105 (19) 6789-6790; https://doi.org/10.1073/iti1908105

    See companion article:

    • Expression of an estrogen receptor agonist in differentiating osteoblast cultures
      - May 12, 2008
    • Improving fluid intelligence with training on working memory
      - Apr 28, 2008
    • Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics
      - May 08, 2008
    • Sildenafil and cardiomyocyte-specific cGMP signaling prevent cardiomyopathic changes associated with dystrophin deficiency
      - May 12, 2008
    • Evidence for the aldo-keto reductase pathway of polycyclic aromatic trans-dihydrodiol activation in human lung A549 cells
      - May 12, 2008

Letters (Online Only)

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    Nodule morphology and growth model
    Bernard P. Boudreau
    PNAS May 13, 2008 105 (19) E21; https://doi.org/10.1073/pnas.0800654105

    See companion article:

    • Reply to Boudreau: Morphologic expression of ferromanganese nodules
      - May 06, 2008
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    Reply to Boudreau: Morphologic expression of ferromanganese nodules
    Celeste A. Asikainen
    PNAS May 13, 2008 105 (19) E22; https://doi.org/10.1073/pnas.0802821105

    See companion article:

    • Nodule morphology and growth model
      - May 06, 2008

Commentaries

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    Increasing fluid intelligence is possible after all
    Robert J. Sternberg
    PNAS May 13, 2008 105 (19) 6791-6792; https://doi.org/10.1073/pnas.0803396105

    See companion article:

    • Improving fluid intelligence with training on working memory
      - Apr 28, 2008
  • You have access
    Long-distance splicing
    Alissa M. Anderson and Jonathan P. Staley
    PNAS May 13, 2008 105 (19) 6793-6794; https://doi.org/10.1073/pnas.0803068105

    See companion article:

    • Cis- and trans-splicing of mRNAs mediated by tRNA sequences in eukaryotic cells
      - May 05, 2008
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    A truer measure of our ignorance
    Luis A. Nunes Amaral
    PNAS May 13, 2008 105 (19) 6795-6796; https://doi.org/10.1073/pnas.0802459105

    See companion article:

    • Estimating the size of the human interactome
      - May 12, 2008

Physical Sciences

  • Applied Mathematics

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      Estimating the size of the human interactome
      • From the Cover
      Michael P. H. Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong Jun An, Michael Lappe, and Carsten Wiuf
      PNAS May 13, 2008 105 (19) 6959-6964; https://doi.org/10.1073/pnas.0708078105

      See companion article:

      • A truer measure of our ignorance
        - May 12, 2008
  • Chemistry

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      Cross-polarized excitons in carbon nanotubes
      Svetlana Kilina, Sergei Tretiak, Stephen K. Doorn, Zhengtang Luo, Fotios Papadimitrakopoulos, Andrei Piryatinski, Avadh Saxena, and Alan R. Bishop
      PNAS May 13, 2008 105 (19) 6797-6802; https://doi.org/10.1073/pnas.0711646105
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      Mitochondrial copper(I) transfer from Cox17 to Sco1 is coupled to electron transfer
      Lucia Banci, Ivano Bertini, Simone Ciofi-Baffoni, Theodoros Hadjiloi, Manuele Martinelli, and Peep Palumaa
      PNAS May 13, 2008 105 (19) 6803-6808; https://doi.org/10.1073/pnas.0800019105
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      Characterization of selective binding of alkali cations with carboxylate by x-ray absorption spectroscopy of liquid microjets
      Janel S. Uejio, Craig P. Schwartz, Andrew M. Duffin, Walter S. Drisdell, Ronald C. Cohen, and Richard J. Saykally
      PNAS May 13, 2008 105 (19) 6809-6812; https://doi.org/10.1073/pnas.0800181105
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      Platinum-based inhibitors of amyloid-β as therapeutic agents for Alzheimer's disease
      Kevin J. Barnham, Vijaya B. Kenche, Giuseppe D. Ciccotosto, David P. Smith, Deborah J. Tew, Xiang Liu, Keyla Perez, Greg A. Cranston, Timothy J. Johanssen, Irene Volitakis, Ashley I. Bush, Colin L. Masters, Anthony R. White, Jeffrey P. Smith, Robert A. Cherny, and Roberto Cappai
      PNAS May 13, 2008 105 (19) 6813-6818; https://doi.org/10.1073/pnas.0800712105
  • Geology

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      A Miocene to Pleistocene climate and elevation record of the Sierra Nevada (California)
      A. Mulch, A. M. Sarna-Wojcicki, M. E. Perkins, and C. P. Chamberlain
      PNAS May 13, 2008 105 (19) 6819-6824; https://doi.org/10.1073/pnas.0708811105
  • Physics

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      Electronic duality in strongly correlated matter
      T. Park, M. J. Graf, L. Boulaevskii, J. L. Sarrao, and J. D. Thompson
      PNAS May 13, 2008 105 (19) 6825-6828; https://doi.org/10.1073/pnas.0801873105
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      Terahertz radiation from bacteriorhodopsin reveals correlated primary electron and proton transfer processes
      G. I. Groma, J. Hebling, I. Z. Kozma, G. Váró, J. Hauer, J. Kuhl, and E. Riedle
      PNAS May 13, 2008 105 (19) 6888-6893; https://doi.org/10.1073/pnas.0706336105

Social Sciences

  • Psychology

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      Improving fluid intelligence with training on working memory
      • From the Cover
      Susanne M. Jaeggi, Martin Buschkuehl, John Jonides, and Walter J. Perrig
      PNAS May 13, 2008 105 (19) 6829-6833; https://doi.org/10.1073/pnas.0801268105

      See companion article:

      • Increasing fluid intelligence is possible after all
        - May 12, 2008
      • In This Issue
        - May 13, 2008

Biological Sciences

  • Anthropology

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      Unlocking evidence of early diet from tooth enamel
      Louise T. Humphrey, M. Christopher Dean, Teresa E. Jeffries, and Malcolm Penn
      PNAS May 13, 2008 105 (19) 6834-6839; https://doi.org/10.1073/pnas.0711513105
  • Applied Biological Sciences

    • Open Access
      Endochondral bone tissue engineering using embryonic stem cells
      Jojanneke M. Jukes, Sanne K. Both, Anouk Leusink, Lotus M. Th. Sterk, Clemens A. van Blitterswijk, and Jan de Boer
      PNAS May 13, 2008 105 (19) 6840-6845; https://doi.org/10.1073/pnas.0711662105
  • Biochemistry

    • Open Access
      Evidence for the aldo-keto reductase pathway of polycyclic aromatic trans-dihydrodiol activation in human lung A549 cells
      Jong-Heum Park, Dipti Mangal, Kirk A. Tacka, Amy M. Quinn, Ronald G. Harvey, Ian A. Blair, and Trevor M. Penning
      PNAS May 13, 2008 105 (19) 6846-6851; https://doi.org/10.1073/pnas.0802776105
    • Open Access
      Regression supports two mechanisms of fork processing in phage T4
      David T. Long and Kenneth N. Kreuzer
      PNAS May 13, 2008 105 (19) 6852-6857; https://doi.org/10.1073/pnas.0711999105
    • Open Access
      In vitro reconstitution and crystal structure of p-aminobenzoate N-oxygenase (AurF) involved in aureothin biosynthesis
      Yoo Seong Choi, Houjin Zhang, Joseph S. Brunzelle, Satish K. Nair, and Huimin Zhao
      PNAS May 13, 2008 105 (19) 6858-6863; https://doi.org/10.1073/pnas.0712073105
    • Open Access
      Cis- and trans-splicing of mRNAs mediated by tRNA sequences in eukaryotic cells
      • From the Cover
      Gianfranco Di Segni, Serena Gastaldi, and Glauco P. Tocchini-Valentini
      PNAS May 13, 2008 105 (19) 6864-6869; https://doi.org/10.1073/pnas.0800420105

      See companion article:

      • Long-distance splicing
        - May 12, 2008
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      Human biliverdin reductase is an ERK activator; hBVR is an ERK nuclear transporter and is required for MAPK signaling
      Nicole Lerner-Marmarosh, Tihomir Miralem, Peter E. M. Gibbs, and Mahin D. Maines
      PNAS May 13, 2008 105 (19) 6870-6875; https://doi.org/10.1073/pnas.0800750105
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      Structure of a TrmA–RNA complex: A consensus RNA fold contributes to substrate selectivity and catalysis in m5U methyltransferases
      Akram Alian, Tom T. Lee, Sarah L. Griner, Robert M. Stroud, and Janet Finer-Moore
      PNAS May 13, 2008 105 (19) 6876-6881; https://doi.org/10.1073/pnas.0802247105
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      Structural insight into signal conversion and inactivation by NTPDase2 in purinergic signaling
      Matthias Zebisch and Norbert Sträter
      PNAS May 13, 2008 105 (19) 6882-6887; https://doi.org/10.1073/pnas.0802535105
  • Biophysics

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      Terahertz radiation from bacteriorhodopsin reveals correlated primary electron and proton transfer processes
      G. I. Groma, J. Hebling, I. Z. Kozma, G. Váró, J. Hauer, J. Kuhl, and E. Riedle
      PNAS May 13, 2008 105 (19) 6888-6893; https://doi.org/10.1073/pnas.0706336105
    • You have access
      Dynamics of phosphodiester synthesis by DNA ligase
      Aurélien Crut, Pravin A. Nair, Daniel A. Koster, Stewart Shuman, and Nynke H. Dekker
      PNAS May 13, 2008 105 (19) 6894-6899; https://doi.org/10.1073/pnas.0800113105
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      Molecular mechanism of pH sensing in KcsA potassium channels
      Ameer N. Thompson, David J. Posson, Pirooz V. Parsa, and Crina M. Nimigean
      PNAS May 13, 2008 105 (19) 6900-6905; https://doi.org/10.1073/pnas.0800873105
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      Force-induced growth of adhesion domains is controlled by receptor mobility
      Ana-Sunčana Smith, Kheya Sengupta, Stefanie Goennenwein, Udo Seifert, and Erich Sackmann
      PNAS May 13, 2008 105 (19) 6906-6911; https://doi.org/10.1073/pnas.0801706105
  • Cell Biology

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      Glucose sensing by MondoA:Mlx complexes: A role for hexokinases and direct regulation of thioredoxin-interacting protein expression
      Carrie A. Stoltzman, Christopher W. Peterson, Kevin T. Breen, Deborah M. Muoio, Andrew N. Billin, and Donald E. Ayer
      PNAS May 13, 2008 105 (19) 6912-6917; https://doi.org/10.1073/pnas.0712199105
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      Different assemblies of the DAM1 complex follow shortening microtubules by distinct mechanisms
      E. L. Grishchuk, I. S. Spiridonov, V. A. Volkov, A. Efremov, S. Westermann, D. Drubin, G. Barnes, F. I. Ataullakhanov, and J. R. McIntosh
      PNAS May 13, 2008 105 (19) 6918-6923; https://doi.org/10.1073/pnas.0801811105
    • Open Access
      Dachshund inhibits oncogene-induced breast cancer cellular migration and invasion through suppression of interleukin-8
      Kongming Wu, Sanjay Katiyar, Anping Li, Manran Liu, Xiaoming Ju, Vladimir M. Popov, Xuanmao Jiao, Michael P. Lisanti, Antonella Casola, and Richard G. Pestell
      PNAS May 13, 2008 105 (19) 6924-6929; https://doi.org/10.1073/pnas.0802085105
    • Open Access
      Influence of genotype and nutrition on survival and metabolism of starving yeast
      Viktor M. Boer, Sasan Amini, and David Botstein
      PNAS May 13, 2008 105 (19) 6930-6935; https://doi.org/10.1073/pnas.0802601105
  • Developmental Biology

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      Inhibition of Wnt signaling by the osteoblast-specific transcription factor Osterix
      Chi Zhang, Kyucheol Cho, Yehong Huang, Jon P. Lyons, Xin Zhou, Krishna Sinha, Pierre D. McCrea, and Benoit de Crombrugghe
      PNAS May 13, 2008 105 (19) 6936-6941; https://doi.org/10.1073/pnas.0710831105
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      Gene-regulation logic in retinal ganglion cell development: Isl1 defines a critical branch distinct from but overlapping with Pou4f2
      Xiuqian Mu, Xueyao Fu, Phillip D. Beremand, Terry L. Thomas, and William H. Klein
      PNAS May 13, 2008 105 (19) 6942-6947; https://doi.org/10.1073/pnas.0802627105
  • Ecology

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      Quorum decision-making facilitates information transfer in fish shoals
      • From the Cover
      Ashley J. W. Ward, David J. T. Sumpter, Iain D. Couzin, Paul J. B. Hart, and Jens Krause
      PNAS May 13, 2008 105 (19) 6948-6953; https://doi.org/10.1073/pnas.0710344105
  • Environmental Sciences

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      Iodide accumulation provides kelp with an inorganic antioxidant impacting atmospheric chemistry
      Frithjof C. Küpper, Lucy J. Carpenter, Gordon B. McFiggans, Carl J. Palmer, Tim J. Waite, Eva-Maria Boneberg, Sonja Woitsch, Markus Weiller, Rafael Abela, Daniel Grolimund, Philippe Potin, Alison Butler, George W. Luther III, Peter M. H. Kroneck, Wolfram Meyer-Klaucke, and Martin C. Feiters
      PNAS May 13, 2008 105 (19) 6954-6958; https://doi.org/10.1073/pnas.0709959105
  • Evolution

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      Estimating the size of the human interactome
      • From the Cover
      Michael P. H. Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong Jun An, Michael Lappe, and Carsten Wiuf
      PNAS May 13, 2008 105 (19) 6959-6964; https://doi.org/10.1073/pnas.0708078105

      See companion article:

      • A truer measure of our ignorance
        - May 12, 2008
    • You have access
      Direct phylogenetic evidence for lateral transfer of elongation factor-like gene
      Ryoma Kamikawa, Yuji Inagaki, and Yoshihiko Sako
      PNAS May 13, 2008 105 (19) 6965-6969; https://doi.org/10.1073/pnas.0711084105
    • Open Access
      Arbovirus evolution in vivo is constrained by host alternation
      Lark L. Coffey, Nikos Vasilakis, Aaron C. Brault, Ann M. Powers, Frédéric Tripet, and Scott C. Weaver
      PNAS May 13, 2008 105 (19) 6970-6975; https://doi.org/10.1073/pnas.0712130105
    • You have access
      The evolution of modularity in bacterial metabolic networks
      Anat Kreimer, Elhanan Borenstein, Uri Gophna, and Eytan Ruppin
      PNAS May 13, 2008 105 (19) 6976-6981; https://doi.org/10.1073/pnas.0712149105
    • You have access
      Selfishness as second-order altruism
      Omar Tonsi Eldakar and David Sloan Wilson
      PNAS May 13, 2008 105 (19) 6982-6986; https://doi.org/10.1073/pnas.0712173105
    • You have access
      Null mutations in human and mouse orthologs frequently result in different phenotypes
      Ben-Yang Liao and Jianzhi Zhang
      PNAS May 13, 2008 105 (19) 6987-6992; https://doi.org/10.1073/pnas.0800387105
    • You have access
      Centrosomal RNA correlates with intron-poor nuclear genes in Spisula oocytes
      Mark C. Alliegro and Mary Anne Alliegro
      PNAS May 13, 2008 105 (19) 6993-6997; https://doi.org/10.1073/pnas.0802293105
  • Genetics

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      Promoter polymorphism of the erythropoietin gene in severe diabetic eye and kidney complications
      Zongzhong Tong, Zhenglin Yang, Shrena Patel, Haoyu Chen, Daniel Gibbs, Xian Yang, Vincent S. Hau, Yuuki Kaminoh, Jennifer Harmon, Erik Pearson, Jeanette Buehler, Yuhong Chen, Baifeng Yu, Nicholas H. Tinkham, Norman A. Zabriskie, Jiexi Zeng, Ling Luo, Jennifer K. Sun, Manvi Prakash, Rola N. Hamam, Stephen Tonna, Ryan Constantine, Cecinio C. Ronquillo, SriniVas Sadda, Robert L. Avery, John M. Brand, Nyall London, Alfred L. Anduze, George L. King, Paul S. Bernstein, Scott Watkins, Genetics of Diabetes, and Diabetic Complication Study Groupn, Lynn B. Jorde, Dean Y. Li, Lloyd Paul Aiello, Martin R. Pollak, and Kang Zhang
      PNAS May 13, 2008 105 (19) 6998-7003; https://doi.org/10.1073/pnas.0800454105
    • You have access
      Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer
      Lin Zhang, Stefano Volinia, Tomas Bonome, George Adrian Calin, Joel Greshock, Nuo Yang, Chang-Gong Liu, Antonis Giannakakis, Pangiotis Alexiou, Kosei Hasegawa, Cameron N. Johnstone, Molly S. Megraw, Sarah Adams, Heini Lassus, Jia Huang, Sippy Kaur, Shun Liang, Praveen Sethupathy, Arto Leminen, Victor A. Simossis, Raphael Sandaltzopoulos, Yoshio Naomoto, Dionyssios Katsaros, Phyllis A. Gimotty, Angela DeMichele, Qihong Huang, Ralf Bützow, Anil K. Rustgi, Barbara L. Weber, Michael J. Birrer, Artemis G. Hatzigeorgiou, Carlo M. Croce, and George Coukos
      PNAS May 13, 2008 105 (19) 7004-7009; https://doi.org/10.1073/pnas.0801615105
  • Immunology

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      Dendritic cell-mediated NK cell activation is controlled by Jagged2–Notch interaction
      Mika Kijima, Takeshi Yamaguchi, Chieko Ishifune, Yoichi Maekawa, Akemi Koyanagi, Hideo Yagita, Shigeru Chiba, Kenji Kishihara, Mitsuo Shimada, and Koji Yasutomo
      PNAS May 13, 2008 105 (19) 7010-7015; https://doi.org/10.1073/pnas.0709919105
    • Open Access
      Identification of innate immunity genes and pathways using a comparative genomics approach
      Scott Alper, Rebecca Laws, Brad Lackford, Windy A. Boyd, Paul Dunlap, Jonathan H. Freedman, and David A. Schwartz
      PNAS May 13, 2008 105 (19) 7016-7021; https://doi.org/10.1073/pnas.0802405105
  • Medical Sciences

    • You have access
      Expression of an estrogen receptor agonist in differentiating osteoblast cultures
      Thomas L. McCarthy, Mary E. Clough, Caren M. Gundberg, and Michael Centrella
      PNAS May 13, 2008 105 (19) 7022-7027; https://doi.org/10.1073/pnas.0800085105
    • You have access
      Sildenafil and cardiomyocyte-specific cGMP signaling prevent cardiomyopathic changes associated with dystrophin deficiency
      M. Khairallah, R. J. Khairallah, M. E. Young, B. G. Allen, M. A. Gillis, G. Danialou, C. F. Deschepper, B. J. Petrof, and C. Des Rosiers
      PNAS May 13, 2008 105 (19) 7028-7033; https://doi.org/10.1073/pnas.0710595105

      See companion article:

      • In This Issue
        - May 13, 2008
    • You have access
      Interferon signaling and treatment outcome in chronic hepatitis C
      Magdalena Sarasin-Filipowicz, Edward J. Oakeley, Francois H. T. Duong, Verena Christen, Luigi Terracciano, Witold Filipowicz, and Markus H. Heim
      PNAS May 13, 2008 105 (19) 7034-7039; https://doi.org/10.1073/pnas.0707882105
    • Open Access
      The basal-like mammary carcinomas induced by Brca1 or Bard1 inactivation implicate the BRCA1/BARD1 heterodimer in tumor suppression
      Reena Shakya, Matthias Szabolcs, Ellen McCarthy, Elson Ospina, Katia Basso, Subhadra Nandula, Vundavalli Murty, Richard Baer, and Thomas Ludwig
      PNAS May 13, 2008 105 (19) 7040-7045; https://doi.org/10.1073/pnas.0711032105
    • You have access
      Tissue-engineered endothelial and epithelial implants differentially and synergistically regulate airway repair
      Brett G. Zani, Koji Kojima, Charles A. Vacanti, and Elazer R. Edelman
      PNAS May 13, 2008 105 (19) 7046-7051; https://doi.org/10.1073/pnas.0802463105
  • Microbiology

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      Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics
      Annelie Pernthaler, Anne E. Dekas, C. Titus Brown, Shana K. Goffredi, Tsegereda Embaye, and Victoria J. Orphan
      PNAS May 13, 2008 105 (19) 7052-7057; https://doi.org/10.1073/pnas.0711303105

      See companion article:

      • In This Issue
        - May 13, 2008
    • You have access
      Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1
      Muriel Gaillard, Nataskha Pernet, Christelle Vogne, Otto Hagenbüchle, and Jan Roelof van der Meer
      PNAS May 13, 2008 105 (19) 7058-7063; https://doi.org/10.1073/pnas.0801269105
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      Rhizobium cellulase CelC2 is essential for primary symbiotic infection of legume host roots
      M. Robledo, J. I. Jiménez-Zurdo, E. Velázquez, M. E. Trujillo, J. L. Zurdo-Piñeiro, M. H. Ramírez-Bahena, B. Ramos, J. M. Díaz-Mínguez, F. Dazzo, E. Martínez-Molina, and P. F. Mateos
      PNAS May 13, 2008 105 (19) 7064-7069; https://doi.org/10.1073/pnas.0802547105
  • Neuroscience

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      Pink1 regulates mitochondrial dynamics through interaction with the fission/fusion machinery
      Yufeng Yang, Yingshi Ouyang, Lichuan Yang, M. Flint Beal, Angus McQuibban, Hannes Vogel, and Bingwei Lu
      PNAS May 13, 2008 105 (19) 7070-7075; https://doi.org/10.1073/pnas.0711845105
    • Open Access
      A mutation in mouse Disc1 that models a schizophrenia risk allele leads to specific alterations in neuronal architecture and cognition
      Mirna Kvajo, Heather McKellar, P. Alexander Arguello, Liam J. Drew, Holly Moore, Amy B. MacDermott, Maria Karayiorgou, and Joseph A. Gogos
      PNAS May 13, 2008 105 (19) 7076-7081; https://doi.org/10.1073/pnas.0802615105
  • Pharmacology

    • Open Access
      A soluble activin Type IIA receptor induces bone formation and improves skeletal integrity
      R. Scott Pearsall, Ernesto Canalis, Milton Cornwall-Brady, Kathryn W. Underwood, Brendan Haigis, Jeffrey Ucran, Ravindra Kumar, Eileen Pobre, Asya Grinberg, Eric D. Werner, Vaida Glatt, Lisa Stadmeyer, Deanna Smith, Jasbir Seehra, and Mary L. Bouxsein
      PNAS May 13, 2008 105 (19) 7082-7087; https://doi.org/10.1073/pnas.0711263105
  • Physiology

    • Open Access
      Human ApoD, an apolipoprotein up-regulated in neurodegenerative diseases, extends lifespan and increases stress resistance in Drosophila
      Julien Muffat, David W. Walker, and Seymour Benzer
      PNAS May 13, 2008 105 (19) 7088-7093; https://doi.org/10.1073/pnas.0800896105
    • You have access
      Proteasomal adaptation to environmental stress links resistance to proteotoxicity with longevity in Caenorhabditis elegans
      Chi Yun, Ariel Stanhill, Yun Yang, Yuhong Zhang, Cole M. Haynes, Chong-Feng Xu, Thomas A. Neubert, Adam Mor, Mark R. Philips, and David Ron
      PNAS May 13, 2008 105 (19) 7094-7099; https://doi.org/10.1073/pnas.0707025105
  • Plant Biology

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      COI1 is a critical component of a receptor for jasmonate and the bacterial virulence factor coronatine
      • From the Cover
      Leron Katsir, Anthony L. Schilmiller, Paul E. Staswick, Sheng Yang He, and Gregg A. Howe
      PNAS May 13, 2008 105 (19) 7100-7105; https://doi.org/10.1073/pnas.0802332105

Correction

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    Correction for Li et al., Urocortin 3 regulates glucose-stimulated insulin secretion and energy homeostasis
    PNAS May 13, 2008 105 (19) 7106; https://doi.org/10.1073/pnas.0803270105
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Proceedings of the National Academy of Sciences: 105 (19)
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