Proceedings of the National Academy of Sciences: 105 (19)

New Research In

May 13, 2008; vol. 105 no. 19

This Week in PNAS

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In This Issue
PNAS May 13, 2008 105 (19) 6789-6790; https://doi.org/10.1073/iti1908105

Letters (Online Only)

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Nodule morphology and growth model
Bernard P. Boudreau

PNAS May 13, 2008 105 (19) E21; https://doi.org/10.1073/pnas.0800654105
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Reply to Boudreau: Morphologic expression of ferromanganese nodules
Celeste A. Asikainen

PNAS May 13, 2008 105 (19) E22; https://doi.org/10.1073/pnas.0802821105

Commentaries

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Increasing fluid intelligence is possible after all
Robert J. Sternberg

PNAS May 13, 2008 105 (19) 6791-6792; https://doi.org/10.1073/pnas.0803396105
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Long-distance splicing
Alissa M. Anderson and Jonathan P. Staley

PNAS May 13, 2008 105 (19) 6793-6794; https://doi.org/10.1073/pnas.0803068105
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A truer measure of our ignorance
Luis A. Nunes Amaral

PNAS May 13, 2008 105 (19) 6795-6796; https://doi.org/10.1073/pnas.0802459105

Physical Sciences

Applied Mathematics
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  Estimating the size of the human interactome
  From the Cover
  
  Michael P. H. Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong Jun An, Michael Lappe, and Carsten Wiuf
  
  PNAS May 13, 2008 105 (19) 6959-6964; https://doi.org/10.1073/pnas.0708078105
Chemistry
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  Cross-polarized excitons in carbon nanotubes
  Svetlana Kilina, Sergei Tretiak, Stephen K. Doorn, Zhengtang Luo, Fotios Papadimitrakopoulos, Andrei Piryatinski, Avadh Saxena, and Alan R. Bishop
  
  PNAS May 13, 2008 105 (19) 6797-6802; https://doi.org/10.1073/pnas.0711646105
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  Mitochondrial copper(I) transfer from Cox17 to Sco1 is coupled to electron transfer
  Lucia Banci, Ivano Bertini, Simone Ciofi-Baffoni, Theodoros Hadjiloi, Manuele Martinelli, and Peep Palumaa
  
  PNAS May 13, 2008 105 (19) 6803-6808; https://doi.org/10.1073/pnas.0800019105
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  Characterization of selective binding of alkali cations with carboxylate by x-ray absorption spectroscopy of liquid microjets
  Janel S. Uejio, Craig P. Schwartz, Andrew M. Duffin, Walter S. Drisdell, Ronald C. Cohen, and Richard J. Saykally
  
  PNAS May 13, 2008 105 (19) 6809-6812; https://doi.org/10.1073/pnas.0800181105
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  Platinum-based inhibitors of amyloid-β as therapeutic agents for Alzheimer's disease
  Kevin J. Barnham, Vijaya B. Kenche, Giuseppe D. Ciccotosto, David P. Smith, Deborah J. Tew, Xiang Liu, Keyla Perez, Greg A. Cranston, Timothy J. Johanssen, Irene Volitakis, Ashley I. Bush, Colin L. Masters, Anthony R. White, Jeffrey P. Smith, Robert A. Cherny, and Roberto Cappai
  
  PNAS May 13, 2008 105 (19) 6813-6818; https://doi.org/10.1073/pnas.0800712105
Geology
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  A Miocene to Pleistocene climate and elevation record of the Sierra Nevada (California)
  A. Mulch, A. M. Sarna-Wojcicki, M. E. Perkins, and C. P. Chamberlain
  
  PNAS May 13, 2008 105 (19) 6819-6824; https://doi.org/10.1073/pnas.0708811105
Physics
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  Electronic duality in strongly correlated matter
  T. Park, M. J. Graf, L. Boulaevskii, J. L. Sarrao, and J. D. Thompson
  
  PNAS May 13, 2008 105 (19) 6825-6828; https://doi.org/10.1073/pnas.0801873105
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  Terahertz radiation from bacteriorhodopsin reveals correlated primary electron and proton transfer processes
  G. I. Groma, J. Hebling, I. Z. Kozma, G. Váró, J. Hauer, J. Kuhl, and E. Riedle
  
  PNAS May 13, 2008 105 (19) 6888-6893; https://doi.org/10.1073/pnas.0706336105

Biological Sciences

Anthropology
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  Unlocking evidence of early diet from tooth enamel
  Louise T. Humphrey, M. Christopher Dean, Teresa E. Jeffries, and Malcolm Penn
  
  PNAS May 13, 2008 105 (19) 6834-6839; https://doi.org/10.1073/pnas.0711513105
Applied Biological Sciences
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  Endochondral bone tissue engineering using embryonic stem cells
  Jojanneke M. Jukes, Sanne K. Both, Anouk Leusink, Lotus M. Th. Sterk, Clemens A. van Blitterswijk, and Jan de Boer
  
  PNAS May 13, 2008 105 (19) 6840-6845; https://doi.org/10.1073/pnas.0711662105
Biochemistry
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  Evidence for the aldo-keto reductase pathway of polycyclic aromatic trans-dihydrodiol activation in human lung A549 cells
  Jong-Heum Park, Dipti Mangal, Kirk A. Tacka, Amy M. Quinn, Ronald G. Harvey, Ian A. Blair, and Trevor M. Penning
  
  PNAS May 13, 2008 105 (19) 6846-6851; https://doi.org/10.1073/pnas.0802776105
- Open Access
  Regression supports two mechanisms of fork processing in phage T4
  David T. Long and Kenneth N. Kreuzer
  
  PNAS May 13, 2008 105 (19) 6852-6857; https://doi.org/10.1073/pnas.0711999105
- Open Access
  In vitro reconstitution and crystal structure of p-aminobenzoate N-oxygenase (AurF) involved in aureothin biosynthesis
  Yoo Seong Choi, Houjin Zhang, Joseph S. Brunzelle, Satish K. Nair, and Huimin Zhao
  
  PNAS May 13, 2008 105 (19) 6858-6863; https://doi.org/10.1073/pnas.0712073105
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  Cis- and trans-splicing of mRNAs mediated by tRNA sequences in eukaryotic cells
  From the Cover
  
  Gianfranco Di Segni, Serena Gastaldi, and Glauco P. Tocchini-Valentini
  
  PNAS May 13, 2008 105 (19) 6864-6869; https://doi.org/10.1073/pnas.0800420105
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  Human biliverdin reductase is an ERK activator; hBVR is an ERK nuclear transporter and is required for MAPK signaling
  Nicole Lerner-Marmarosh, Tihomir Miralem, Peter E. M. Gibbs, and Mahin D. Maines
  
  PNAS May 13, 2008 105 (19) 6870-6875; https://doi.org/10.1073/pnas.0800750105
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  Structure of a TrmA–RNA complex: A consensus RNA fold contributes to substrate selectivity and catalysis in m⁵U methyltransferases
  Akram Alian, Tom T. Lee, Sarah L. Griner, Robert M. Stroud, and Janet Finer-Moore
  
  PNAS May 13, 2008 105 (19) 6876-6881; https://doi.org/10.1073/pnas.0802247105
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  Structural insight into signal conversion and inactivation by NTPDase2 in purinergic signaling
  Matthias Zebisch and Norbert Sträter
  
  PNAS May 13, 2008 105 (19) 6882-6887; https://doi.org/10.1073/pnas.0802535105
Biophysics
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  Terahertz radiation from bacteriorhodopsin reveals correlated primary electron and proton transfer processes
  G. I. Groma, J. Hebling, I. Z. Kozma, G. Váró, J. Hauer, J. Kuhl, and E. Riedle
  
  PNAS May 13, 2008 105 (19) 6888-6893; https://doi.org/10.1073/pnas.0706336105
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  Dynamics of phosphodiester synthesis by DNA ligase
  Aurélien Crut, Pravin A. Nair, Daniel A. Koster, Stewart Shuman, and Nynke H. Dekker
  
  PNAS May 13, 2008 105 (19) 6894-6899; https://doi.org/10.1073/pnas.0800113105
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  Molecular mechanism of pH sensing in KcsA potassium channels
  Ameer N. Thompson, David J. Posson, Pirooz V. Parsa, and Crina M. Nimigean
  
  PNAS May 13, 2008 105 (19) 6900-6905; https://doi.org/10.1073/pnas.0800873105
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  Force-induced growth of adhesion domains is controlled by receptor mobility
  Ana-Sunčana Smith, Kheya Sengupta, Stefanie Goennenwein, Udo Seifert, and Erich Sackmann
  
  PNAS May 13, 2008 105 (19) 6906-6911; https://doi.org/10.1073/pnas.0801706105
Cell Biology
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  Glucose sensing by MondoA:Mlx complexes: A role for hexokinases and direct regulation of thioredoxin-interacting protein expression
  Carrie A. Stoltzman, Christopher W. Peterson, Kevin T. Breen, Deborah M. Muoio, Andrew N. Billin, and Donald E. Ayer
  
  PNAS May 13, 2008 105 (19) 6912-6917; https://doi.org/10.1073/pnas.0712199105
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  Different assemblies of the DAM1 complex follow shortening microtubules by distinct mechanisms
  E. L. Grishchuk, I. S. Spiridonov, V. A. Volkov, A. Efremov, S. Westermann, D. Drubin, G. Barnes, F. I. Ataullakhanov, and J. R. McIntosh
  
  PNAS May 13, 2008 105 (19) 6918-6923; https://doi.org/10.1073/pnas.0801811105
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  Dachshund inhibits oncogene-induced breast cancer cellular migration and invasion through suppression of interleukin-8
  Kongming Wu, Sanjay Katiyar, Anping Li, Manran Liu, Xiaoming Ju, Vladimir M. Popov, Xuanmao Jiao, Michael P. Lisanti, Antonella Casola, and Richard G. Pestell
  
  PNAS May 13, 2008 105 (19) 6924-6929; https://doi.org/10.1073/pnas.0802085105
- Open Access
  Influence of genotype and nutrition on survival and metabolism of starving yeast
  Viktor M. Boer, Sasan Amini, and David Botstein
  
  PNAS May 13, 2008 105 (19) 6930-6935; https://doi.org/10.1073/pnas.0802601105
Developmental Biology
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  Inhibition of Wnt signaling by the osteoblast-specific transcription factor Osterix
  Chi Zhang, Kyucheol Cho, Yehong Huang, Jon P. Lyons, Xin Zhou, Krishna Sinha, Pierre D. McCrea, and Benoit de Crombrugghe
  
  PNAS May 13, 2008 105 (19) 6936-6941; https://doi.org/10.1073/pnas.0710831105
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  Gene-regulation logic in retinal ganglion cell development: Isl1 defines a critical branch distinct from but overlapping with Pou4f2
  Xiuqian Mu, Xueyao Fu, Phillip D. Beremand, Terry L. Thomas, and William H. Klein
  
  PNAS May 13, 2008 105 (19) 6942-6947; https://doi.org/10.1073/pnas.0802627105
Ecology
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  Quorum decision-making facilitates information transfer in fish shoals
  From the Cover
  
  Ashley J. W. Ward, David J. T. Sumpter, Iain D. Couzin, Paul J. B. Hart, and Jens Krause
  
  PNAS May 13, 2008 105 (19) 6948-6953; https://doi.org/10.1073/pnas.0710344105
Environmental Sciences
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  Iodide accumulation provides kelp with an inorganic antioxidant impacting atmospheric chemistry
  Frithjof C. Küpper, Lucy J. Carpenter, Gordon B. McFiggans, Carl J. Palmer, Tim J. Waite, Eva-Maria Boneberg, Sonja Woitsch, Markus Weiller, Rafael Abela, Daniel Grolimund, Philippe Potin, Alison Butler, George W. Luther III, Peter M. H. Kroneck, Wolfram Meyer-Klaucke, and Martin C. Feiters
  
  PNAS May 13, 2008 105 (19) 6954-6958; https://doi.org/10.1073/pnas.0709959105
Evolution
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  Estimating the size of the human interactome
  From the Cover
  
  Michael P. H. Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong Jun An, Michael Lappe, and Carsten Wiuf
  
  PNAS May 13, 2008 105 (19) 6959-6964; https://doi.org/10.1073/pnas.0708078105
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  Direct phylogenetic evidence for lateral transfer of elongation factor-like gene
  Ryoma Kamikawa, Yuji Inagaki, and Yoshihiko Sako
  
  PNAS May 13, 2008 105 (19) 6965-6969; https://doi.org/10.1073/pnas.0711084105
- Open Access
  Arbovirus evolution in vivo is constrained by host alternation
  Lark L. Coffey, Nikos Vasilakis, Aaron C. Brault, Ann M. Powers, Frédéric Tripet, and Scott C. Weaver
  
  PNAS May 13, 2008 105 (19) 6970-6975; https://doi.org/10.1073/pnas.0712130105
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  The evolution of modularity in bacterial metabolic networks
  Anat Kreimer, Elhanan Borenstein, Uri Gophna, and Eytan Ruppin
  
  PNAS May 13, 2008 105 (19) 6976-6981; https://doi.org/10.1073/pnas.0712149105
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  Selfishness as second-order altruism
  Omar Tonsi Eldakar and David Sloan Wilson
  
  PNAS May 13, 2008 105 (19) 6982-6986; https://doi.org/10.1073/pnas.0712173105
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  Null mutations in human and mouse orthologs frequently result in different phenotypes
  Ben-Yang Liao and Jianzhi Zhang
  
  PNAS May 13, 2008 105 (19) 6987-6992; https://doi.org/10.1073/pnas.0800387105
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  Centrosomal RNA correlates with intron-poor nuclear genes in Spisula oocytes
  Mark C. Alliegro and Mary Anne Alliegro
  
  PNAS May 13, 2008 105 (19) 6993-6997; https://doi.org/10.1073/pnas.0802293105
Genetics
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  Promoter polymorphism of the erythropoietin gene in severe diabetic eye and kidney complications
  Zongzhong Tong, Zhenglin Yang, Shrena Patel, Haoyu Chen, Daniel Gibbs, Xian Yang, Vincent S. Hau, Yuuki Kaminoh, Jennifer Harmon, Erik Pearson, Jeanette Buehler, Yuhong Chen, Baifeng Yu, Nicholas H. Tinkham, Norman A. Zabriskie, Jiexi Zeng, Ling Luo, Jennifer K. Sun, Manvi Prakash, Rola N. Hamam, Stephen Tonna, Ryan Constantine, Cecinio C. Ronquillo, SriniVas Sadda, Robert L. Avery, John M. Brand, Nyall London, Alfred L. Anduze, George L. King, Paul S. Bernstein, Scott Watkins, Genetics of Diabetes, and Diabetic Complication Study Groupn, Lynn B. Jorde, Dean Y. Li, Lloyd Paul Aiello, Martin R. Pollak, and Kang Zhang
  
  PNAS May 13, 2008 105 (19) 6998-7003; https://doi.org/10.1073/pnas.0800454105
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  Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer
  Lin Zhang, Stefano Volinia, Tomas Bonome, George Adrian Calin, Joel Greshock, Nuo Yang, Chang-Gong Liu, Antonis Giannakakis, Pangiotis Alexiou, Kosei Hasegawa, Cameron N. Johnstone, Molly S. Megraw, Sarah Adams, Heini Lassus, Jia Huang, Sippy Kaur, Shun Liang, Praveen Sethupathy, Arto Leminen, Victor A. Simossis, Raphael Sandaltzopoulos, Yoshio Naomoto, Dionyssios Katsaros, Phyllis A. Gimotty, Angela DeMichele, Qihong Huang, Ralf Bützow, Anil K. Rustgi, Barbara L. Weber, Michael J. Birrer, Artemis G. Hatzigeorgiou, Carlo M. Croce, and George Coukos
  
  PNAS May 13, 2008 105 (19) 7004-7009; https://doi.org/10.1073/pnas.0801615105
Immunology
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  Dendritic cell-mediated NK cell activation is controlled by Jagged2–Notch interaction
  Mika Kijima, Takeshi Yamaguchi, Chieko Ishifune, Yoichi Maekawa, Akemi Koyanagi, Hideo Yagita, Shigeru Chiba, Kenji Kishihara, Mitsuo Shimada, and Koji Yasutomo
  
  PNAS May 13, 2008 105 (19) 7010-7015; https://doi.org/10.1073/pnas.0709919105
- Open Access
  Identification of innate immunity genes and pathways using a comparative genomics approach
  Scott Alper, Rebecca Laws, Brad Lackford, Windy A. Boyd, Paul Dunlap, Jonathan H. Freedman, and David A. Schwartz
  
  PNAS May 13, 2008 105 (19) 7016-7021; https://doi.org/10.1073/pnas.0802405105
Medical Sciences
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  Expression of an estrogen receptor agonist in differentiating osteoblast cultures
  Thomas L. McCarthy, Mary E. Clough, Caren M. Gundberg, and Michael Centrella
  
  PNAS May 13, 2008 105 (19) 7022-7027; https://doi.org/10.1073/pnas.0800085105
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  Sildenafil and cardiomyocyte-specific cGMP signaling prevent cardiomyopathic changes associated with dystrophin deficiency
  M. Khairallah, R. J. Khairallah, M. E. Young, B. G. Allen, M. A. Gillis, G. Danialou, C. F. Deschepper, B. J. Petrof, and C. Des Rosiers
  
  PNAS May 13, 2008 105 (19) 7028-7033; https://doi.org/10.1073/pnas.0710595105
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  Interferon signaling and treatment outcome in chronic hepatitis C
  Magdalena Sarasin-Filipowicz, Edward J. Oakeley, Francois H. T. Duong, Verena Christen, Luigi Terracciano, Witold Filipowicz, and Markus H. Heim
  
  PNAS May 13, 2008 105 (19) 7034-7039; https://doi.org/10.1073/pnas.0707882105
- Open Access
  The basal-like mammary carcinomas induced by Brca1 or Bard1 inactivation implicate the BRCA1/BARD1 heterodimer in tumor suppression
  Reena Shakya, Matthias Szabolcs, Ellen McCarthy, Elson Ospina, Katia Basso, Subhadra Nandula, Vundavalli Murty, Richard Baer, and Thomas Ludwig
  
  PNAS May 13, 2008 105 (19) 7040-7045; https://doi.org/10.1073/pnas.0711032105
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  Tissue-engineered endothelial and epithelial implants differentially and synergistically regulate airway repair
  Brett G. Zani, Koji Kojima, Charles A. Vacanti, and Elazer R. Edelman
  
  PNAS May 13, 2008 105 (19) 7046-7051; https://doi.org/10.1073/pnas.0802463105
Microbiology
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  Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics
  Annelie Pernthaler, Anne E. Dekas, C. Titus Brown, Shana K. Goffredi, Tsegereda Embaye, and Victoria J. Orphan
  
  PNAS May 13, 2008 105 (19) 7052-7057; https://doi.org/10.1073/pnas.0711303105
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  Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1
  Muriel Gaillard, Nataskha Pernet, Christelle Vogne, Otto Hagenbüchle, and Jan Roelof van der Meer
  
  PNAS May 13, 2008 105 (19) 7058-7063; https://doi.org/10.1073/pnas.0801269105
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  Rhizobium cellulase CelC2 is essential for primary symbiotic infection of legume host roots
  M. Robledo, J. I. Jiménez-Zurdo, E. Velázquez, M. E. Trujillo, J. L. Zurdo-Piñeiro, M. H. Ramírez-Bahena, B. Ramos, J. M. Díaz-Mínguez, F. Dazzo, E. Martínez-Molina, and P. F. Mateos
  
  PNAS May 13, 2008 105 (19) 7064-7069; https://doi.org/10.1073/pnas.0802547105
Neuroscience
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  Pink1 regulates mitochondrial dynamics through interaction with the fission/fusion machinery
  Yufeng Yang, Yingshi Ouyang, Lichuan Yang, M. Flint Beal, Angus McQuibban, Hannes Vogel, and Bingwei Lu
  
  PNAS May 13, 2008 105 (19) 7070-7075; https://doi.org/10.1073/pnas.0711845105
- Open Access
  A mutation in mouse Disc1 that models a schizophrenia risk allele leads to specific alterations in neuronal architecture and cognition
  Mirna Kvajo, Heather McKellar, P. Alexander Arguello, Liam J. Drew, Holly Moore, Amy B. MacDermott, Maria Karayiorgou, and Joseph A. Gogos
  
  PNAS May 13, 2008 105 (19) 7076-7081; https://doi.org/10.1073/pnas.0802615105
Pharmacology
- Open Access
  A soluble activin Type IIA receptor induces bone formation and improves skeletal integrity
  R. Scott Pearsall, Ernesto Canalis, Milton Cornwall-Brady, Kathryn W. Underwood, Brendan Haigis, Jeffrey Ucran, Ravindra Kumar, Eileen Pobre, Asya Grinberg, Eric D. Werner, Vaida Glatt, Lisa Stadmeyer, Deanna Smith, Jasbir Seehra, and Mary L. Bouxsein
  
  PNAS May 13, 2008 105 (19) 7082-7087; https://doi.org/10.1073/pnas.0711263105
Physiology
- Open Access
  Human ApoD, an apolipoprotein up-regulated in neurodegenerative diseases, extends lifespan and increases stress resistance in Drosophila
  Julien Muffat, David W. Walker, and Seymour Benzer
  
  PNAS May 13, 2008 105 (19) 7088-7093; https://doi.org/10.1073/pnas.0800896105
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  Proteasomal adaptation to environmental stress links resistance to proteotoxicity with longevity in Caenorhabditis elegans
  Chi Yun, Ariel Stanhill, Yun Yang, Yuhong Zhang, Cole M. Haynes, Chong-Feng Xu, Thomas A. Neubert, Adam Mor, Mark R. Philips, and David Ron
  
  PNAS May 13, 2008 105 (19) 7094-7099; https://doi.org/10.1073/pnas.0707025105
Plant Biology
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  COI1 is a critical component of a receptor for jasmonate and the bacterial virulence factor coronatine
  From the Cover
  
  Leron Katsir, Anthony L. Schilmiller, Paul E. Staswick, Sheng Yang He, and Gregg A. Howe
  
  PNAS May 13, 2008 105 (19) 7100-7105; https://doi.org/10.1073/pnas.0802332105

Correction

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Correction for Li et al., Urocortin 3 regulates glucose-stimulated insulin secretion and energy homeostasis
PNAS May 13, 2008 105 (19) 7106; https://doi.org/10.1073/pnas.0803270105

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This Week in PNAS

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Physical Sciences

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Chemistry

Geology

Physics

Social Sciences

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Anthropology

Applied Biological Sciences

Biochemistry

Biophysics

Cell Biology

Developmental Biology

Ecology

Environmental Sciences

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Genetics

Immunology

Medical Sciences

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Neuroscience

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Physiology

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