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Research Article

An aspartate and a water molecule mediate efficient acid-base catalysis in a tailored antibody pocket

Erik W. Debler, Roger Müller, Donald Hilvert, and Ian A. Wilson
  1. aDepartment of Molecular Biology and Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037 and
  2. bLaboratorium für Organische Chemie, ETH Zürich, CH-8093 Zürich, Switzerland

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PNAS November 3, 2009 106 (44) 18539-18544; https://doi.org/10.1073/pnas.0902700106
Erik W. Debler
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Roger Müller
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Donald Hilvert
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  • For correspondence: hilvert@org.chem.ethz.ch wilson@scripps.edu
Ian A. Wilson
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  • For correspondence: hilvert@org.chem.ethz.ch wilson@scripps.edu
  1. Edited by Richard Wolfenden, University of North Carolina, Chapel Hill, NC, and approved September 11, 2009 (received for review March 11, 2009)

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Article Information

vol. 106 no. 44 18539-18544
DOI: 
https://doi.org/10.1073/pnas.0902700106
PubMed: 
19846764

Published By: 
National Academy of Sciences
Print ISSN: 
0027-8424
Online ISSN: 
1091-6490
History: 
  • Published in issue November 3, 2009.
  • Published first October 21, 2009.

Copyright & Usage: 
© 2009

Author Information

  1. Erik W. Deblera,1,
  2. Roger Müllerb,2,
  3. Donald Hilvertb,3 and
  4. Ian A. Wilsona,3
  1. aDepartment of Molecular Biology and Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037 and
  2. bLaboratorium für Organische Chemie, ETH Zürich, CH-8093 Zürich, Switzerland
  • ↵1Present address: Laboratory of Cell Biology, Howard Hughes Medical Institute, 1230 York Avenue, Rockefeller University, New York, NY 10065.

  • ↵2Present address: Munich Center for Integrated Protein Science (CIPSM) at the Department Chemie, Technische Universität München, D-85747 Garching, Germany.

  1. Edited by Richard Wolfenden, University of North Carolina, Chapel Hill, NC, and approved September 11, 2009 (received for review March 11, 2009)

Footnotes

  • 3To whom correspondence may be addressed. hilvert{at}org.chem.ethz.ch or wilson{at}scripps.edu
  • Author contributions: E.W.D., R.M., D.H., and I.A.W. designed research; E.W.D. and R.M. performed research; E.W.D. and R.M. contributed new reagents/analytic tools; E.W.D., R.M., D.H., and I.A.W. analyzed data; and E.W.D., R.M., D.H., and I.A.W. wrote the paper.

  • The authors declare no conflict of interest.

  • This article is a PNAS Direct Submission.

  • Data deposition: The atomic coordinates and structure factors have been deposited in the Protein Data Bank, www.pdb.org [PDB ID codes 3FO0 (hapten complex of the 13G5 wild-type), 3FO1 (hapten complex of the 113G5-GluL34Ala variant), and 3FO2 (hapten complex of the 13G5-GluL34Gln variant)].

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Article usage

Article usage: October 2009 to April 2021

AbstractFullPdf
Oct 20091189098
Nov 2009281069181
Dec 20091843234
Total 20094183101313
Jan 20101452336
Feb 20101212832
Mar 2010951916
Apr 2010701919
May 2010431914
Jun 2010411810
Jul 201038189
Aug 201030129
Sep 2010351810
Oct 2010412420
Nov 201033158
Dec 201026127
Total 2010718225190
Jan 201123610
Feb 2011321517
Mar 2011301725
Apr 2011191313
May 201113515
Jun 2011151311
Jul 20111668
Aug 201123396
Sep 201121127
Oct 201159169
Nov 201124125
Dec 20111623
Total 2011291156129
Jan 2012274115
Feb 2012261311
Mar 2012402711
Apr 201222129
May 2012261921
Jun 20122255
Jul 201215107
Aug 20121064
Sep 20122246
Oct 2012241111
Nov 2012261112
Dec 201223116
Total 2012283170118
Jan 20131955
Feb 2013325014
Mar 2013281113
Apr 201320716
May 201320815
Jun 201313175
Jul 201310263
Aug 201310143
Sep 201314115
Oct 2013262911
Nov 20132965
Dec 20131662
Total 201323719097
Jan 201420124
Feb 201412385
Mar 201413811
Apr 2014243813
May 2014321111
Jun 20141463
Jul 20141791
Aug 201421146
Sep 201417125
Oct 201422345
Nov 20141886
Dec 20145082
Total 201426019872
Jan 20153144
Feb 20151572
Mar 20151775
Apr 20151679
May 20152585
Jun 201513148
Jul 2015424
Aug 20152625
Sep 20152177
Oct 2015817
Nov 20151146
Dec 2015784
Total 20151947166
Jan 20162645
Feb 20161835
Mar 20161559
Apr 20161587
May 20161264
Jun 20166174
Jul 20161024
Aug 2016924
Sep 20161965
Oct 20161755
Nov 20161822
Dec 20161338
Total 20161786362
Jan 2017724
Feb 2017871
Mar 20171358
Apr 20171337
May 2017537
Jun 201715910
Jul 2017663
Aug 2017999
Sep 2017478
Oct 20174515
Nov 2017784
Dec 2017643
Total 2017976879
Jan 20181381
Feb 201817199
Mar 2018201623
Apr 201818217
May 201825226
Jun 201811102
Jul 201811144
Aug 201819203
Sep 201824265
Oct 20184322
Nov 20181603
Dec 20180232
Total 201816327167
Jan 2019095
Feb 20190123
Mar 2019278
Apr 20192133
May 2019198
Jun 20191121
Jul 20191125
Aug 20190913
Sep 2019031
Oct 20192133
Nov 20192285
Dec 20193199
Total 20191414664
Jan 20201152
Feb 20200137
Mar 20200104
Apr 20200253
May 20203313
Jun 20201164
Jul 20200113
Aug 20200113
Sep 20205221
Oct 202003010
Nov 20206354
Dec 202033511
Total 20201925455
Jan 202123610
Feb 202162210
Mar 20211294
Apr 2021084
Total 202199528
Total664620081340
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An aspartate and a water molecule mediate efficient acid-base catalysis in a tailored antibody pocket
Erik W. Debler, Roger Müller, Donald Hilvert, Ian A. Wilson
Proceedings of the National Academy of Sciences Nov 2009, 106 (44) 18539-18544; DOI: 10.1073/pnas.0902700106

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An aspartate and a water molecule mediate efficient acid-base catalysis in a tailored antibody pocket
Erik W. Debler, Roger Müller, Donald Hilvert, Ian A. Wilson
Proceedings of the National Academy of Sciences Nov 2009, 106 (44) 18539-18544; DOI: 10.1073/pnas.0902700106
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