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Research Article

Optimal population coding by noisy spiking neurons

Gašper Tkačik, Jason S. Prentice, Vijay Balasubramanian, and Elad Schneidman
  1. aDepartment of Physics and Astronomy, University of Pennsylvania, Philadelphia, PA 19104; and
  2. bDepartment of Neurobiology, Weizmann Institute of Science, 76100 Rehovot, Israel

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PNAS August 10, 2010 107 (32) 14419-14424; https://doi.org/10.1073/pnas.1004906107
Gašper Tkačik
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  • For correspondence: gtkacik@sas.upenn.edu
Jason S. Prentice
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Vijay Balasubramanian
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Elad Schneidman
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  1. Edited* by Curtis G. Callan, Princeton University, Princeton, NJ, and approved June 30, 2010 (received for review April 10, 2010)

  2. ↵1V.B. and E.S. contributed equally to this work.

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Abstract

In retina and in cortical slice the collective response of spiking neural populations is well described by “maximum-entropy” models in which only pairs of neurons interact. We asked, how should such interactions be organized to maximize the amount of information represented in population responses? To this end, we extended the linear-nonlinear-Poisson model of single neural response to include pairwise interactions, yielding a stimulus-dependent, pairwise maximum-entropy model. We found that as we varied the noise level in single neurons and the distribution of network inputs, the optimal pairwise interactions smoothly interpolated to achieve network functions that are usually regarded as discrete—stimulus decorrelation, error correction, and independent encoding. These functions reflected a trade-off between efficient consumption of finite neural bandwidth and the use of redundancy to mitigate noise. Spontaneous activity in the optimal network reflected stimulus-induced activity patterns, and single-neuron response variability overestimated network noise. Our analysis suggests that rather than having a single coding principle hardwired in their architecture, networks in the brain should adapt their function to changing noise and stimulus correlations.

  • adaptation
  • neural networks
  • Ising model
  • attractor states

Footnotes

  • 2To whom correspondence should be addressed. E-mail: gtkacik{at}sas.upenn.edu.
  • Author contributions: G.T., J.S.P., V.B., and E.S. designed research; G.T., J.S.P., V.B., and E.S. performed research; G.T., J.S.P., V.B., and E.S. analyzed data; and G.T., V.B., and E.S. wrote the paper.

  • The authors declare no conflict of interest.

  • *This Direct Submission article had a prearranged editor.

  • This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1004906107/-/DCSupplemental.

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Optimal population coding by noisy spiking neurons
Gašper Tkačik, Jason S. Prentice, Vijay Balasubramanian, Elad Schneidman
Proceedings of the National Academy of Sciences Aug 2010, 107 (32) 14419-14424; DOI: 10.1073/pnas.1004906107

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Optimal population coding by noisy spiking neurons
Gašper Tkačik, Jason S. Prentice, Vijay Balasubramanian, Elad Schneidman
Proceedings of the National Academy of Sciences Aug 2010, 107 (32) 14419-14424; DOI: 10.1073/pnas.1004906107
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Proceedings of the National Academy of Sciences: 107 (32)
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