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Table of Contents
March 08, 2011; vol. 108 no. 10
This week in PNAS
Letters (Online Only)
- You have accessAbsence of CD155 aggravates acute graft-versus-host diseaseSebastian Seth, Inga Ravens, Chun-Wei Lee, Silke Glage, Andre Bleich, Reinhold Förster, Günter Bernhardt, and Christian Koenecke
- You have accessReply to Seth et al.: DNAX accessory molecule-1 (DNAM-1) plays an important role in alloreactive CD8+ T cells responsible for the exacerbation of acute graft-versus-host diseaseTsukasa Nabekura, Kazuko Shibuya, and Akira Shibuya
- You have accessPsychophysical and physiological evidence contradicts a model of dynamic image stabilizationChristian Wehrhahn
- You have accessReply to Wehrhahn: Experimental requirements for testing the role of peripheral cues in dynamic image stabilizationYoram Burak, Uri Rokni, Markus Meister, and Haim Sompolinsky
QnAs
Physical Sciences
Applied Physical Sciences
- You have accessMitigation of malicious attacks on networksChristian M. Schneider, André A. Moreira, José S. Andrade Jr., Shlomo Havlin, and Hans J. Herrmann
- You have accessMicrobubbles reveal chiral fluid flows in bacterial swarmsYilin Wu, Basarab G. Hosu, and Howard C. Berg
Chemistry
- You have accessTwo ground state isoforms and a chromophore D-ring photoflip triggering extensive intramolecular changes in a canonical phytochromeChen Song, Georgios Psakis, Christina Lang, Jo Mailliet, Wolfgang Gärtner, Jon Hughes, and Jörg Matysik
- You have accessSolving structure in the CP29 light harvesting complex with polarization-phased 2D electronic spectroscopyNaomi S. Ginsberg, Jeffrey A. Davis, Matteo Ballottari, Yuan-Chung Cheng, Roberto Bassi, and Graham R. Fleming
- You have accessVertical nanopillars for highly localized fluorescence imagingChong Xie, Lindsey Hanson, Yi Cui, and Bianxiao Cui
- You have accessActivatable aptamer probe for contrast-enhanced in vivo cancer imaging based on cell membrane protein-triggered conformation alterationHui Shi, Xiaoxiao He, Kemin Wang, Xu Wu, Xiaosheng Ye, Qiuping Guo, Weihong Tan, Zhihe Qing, Xiaohai Yang, and Bing Zhou
- You have accessRole of large thermal fluctuations and magnesium ions in t-RNA selectivity of the ribosomeZuojun Guo, Meghan Gibson, Sanyasi Sitha, Steven Chu, and Udayan Mohanty
- You have accessMapping backbone and side-chain interactions in the transition state of a coupled protein folding and binding reactionAnnett Bachmann, Dirk Wildemann, Florian Praetorius, Gunter Fischer, and Thomas Kiefhaber
Environmental Sciences
- You have accessResponses of wind erosion to climate-induced vegetation changes on the Colorado PlateauSeth M. Munson, Jayne Belnap, and Gregory S. Okin
- You have accessMicrobial alignment in flow changes ocean light climateMarcos, Justin R. Seymour, Mitul Luhar, William M. Durham, James G. Mitchell, Andreas Macke, and Roman Stocker
Geology
- You have accessFish as major carbonate mud producers and missing components of the tropical carbonate factoryChris T. Perry, Michael A. Salter, Alastair R. Harborne, Stephen F. Crowley, Howard L. Jelks, and Rod W. Wilson
- You have accessDrought variability in the Pacific Northwest from a 6,000-yr lake sediment recordDaniel B. Nelson, Mark B. Abbott, Byron Steinman, Pratigya J. Polissar, Nathan D. Stansell, Joseph D. Ortiz, Michael F. Rosenmeier, Bruce P. Finney, and Jon Riedel
- You have accessPulse of atmospheric oxygen during the late CambrianMatthew R. Saltzman, Seth A. Young, Lee R. Kump, Benjamin C. Gill, Timothy W. Lyons, and Bruce Runnegar
Social Sciences
Anthropology
- You have accessLate Neandertals and the intentional removal of feathers as evidenced from bird bone taphonomy at Fumane Cave 44 ky B.P., ItalyMarco Peresani, Ivana Fiore, Monica Gala, Matteo Romandini, and Antonio Tagliacozzo
Psychological And Cognitive Sciences
- You have accessAttention-driven auditory cortex short-term plasticity helps segregate relevant sounds from noiseJyrki Ahveninen, Matti Hämäläinen, Iiro P. Jääskeläinen, Seppo P. Ahlfors, Samantha Huang, Fa-Hsuan Lin, Tommi Raij, Mikko Sams, Christos E. Vasios, and John W. Belliveau
Biological Sciences
Agricultural Sciences
- Open AccessModulation of behavioral phase changes of the migratory locust by the catecholamine metabolic pathwayZongyuan Ma, Wei Guo, Xiaojiao Guo, Xianhui Wang, and Le Kang
Anthropology
- You have accessLate Neandertals and the intentional removal of feathers as evidenced from bird bone taphonomy at Fumane Cave 44 ky B.P., ItalyMarco Peresani, Ivana Fiore, Monica Gala, Matteo Romandini, and Antonio Tagliacozzo
Applied Biological Sciences
- You have accessVertical nanopillars for highly localized fluorescence imagingChong Xie, Lindsey Hanson, Yi Cui, and Bianxiao Cui
- You have accessActivatable aptamer probe for contrast-enhanced in vivo cancer imaging based on cell membrane protein-triggered conformation alterationHui Shi, Xiaoxiao He, Kemin Wang, Xu Wu, Xiaosheng Ye, Qiuping Guo, Weihong Tan, Zhihe Qing, Xiaohai Yang, and Bing Zhou
Biochemistry
- Open AccessCore promoter recognition complex changes accompany liver developmentJoseph A. D’Alessio, Raymond Ng, Holger Willenbring, and Robert Tjian
- You have accessStructural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralogLuc Bonnefond, Taiga Arai, Yuriko Sakaguchi, Tsutomu Suzuki, Ryuichiro Ishitani, and Osamu Nureki
- You have accessInsertion domain within mammalian mitochondrial translation initiation factor 2 serves the role of eubacterial initiation factor 1Aymen S. Yassin, Md. Emdadul Haque, Partha P. Datta, Kevin Elmore, Nilesh K. Banavali, Linda L. Spremulli, and Rajendra K. Agrawal
- You have accessTwo rotary motors in F-ATP synthase are elastically coupled by a flexible rotor and a stiff stator stalkAndré Wächter, Yumin Bi, Stanley D. Dunn, Brian D. Cain, Hendrik Sielaff, Frank Wintermann, Siegfried Engelbrecht, and Wolfgang Junge
- You have accessRNA methylation by Radical SAM enzymes RlmN and Cfr proceeds via methylene transfer and hydride shiftFeng Yan and Danica Galonić Fujimori
- You have accessMolecular basis of substrate-induced permeation by an amino acid antiporterLukasz Kowalczyk, Mercè Ratera, Antonella Paladino, Paola Bartoccioni, Ekaitz Errasti-Murugarren, Eva Valencia, Guillem Portella, Susanna Bial, Antonio Zorzano, Ignacio Fita, Modesto Orozco, Xavier Carpena, José Luis Vázquez-Ibar, and Manuel Palacín
- You have accessRewiring hydrogenase-dependent redox circuits in cyanobacteriaDaniel C. Ducat, Gairik Sachdeva, and Pamela A. Silver
Biophysics And Computational Biology
- You have accessTwo ground state isoforms and a chromophore D-ring photoflip triggering extensive intramolecular changes in a canonical phytochromeChen Song, Georgios Psakis, Christina Lang, Jo Mailliet, Wolfgang Gärtner, Jon Hughes, and Jörg Matysik
- You have accessSolving structure in the CP29 light harvesting complex with polarization-phased 2D electronic spectroscopyNaomi S. Ginsberg, Jeffrey A. Davis, Matteo Ballottari, Yuan-Chung Cheng, Roberto Bassi, and Graham R. Fleming
- You have accessRole of large thermal fluctuations and magnesium ions in t-RNA selectivity of the ribosomeZuojun Guo, Meghan Gibson, Sanyasi Sitha, Steven Chu, and Udayan Mohanty
- You have accessMapping backbone and side-chain interactions in the transition state of a coupled protein folding and binding reactionAnnett Bachmann, Dirk Wildemann, Florian Praetorius, Gunter Fischer, and Thomas Kiefhaber
- Open AccessTransmembrane orientation and possible role of the fusogenic peptide from parainfluenza virus 5 (PIV5) in promoting fusion
- From the Cover
Jason E. Donald, Yao Zhang, Giacomo Fiorin, Vincenzo Carnevale, David R. Slochower, Feng Gai, Michael L. Klein, and William F. DeGradoSee companion article:
- A bundling of viral fusion mechanisms- Feb 28, 2011
- Open AccessInterconversions of P and F intermediates of cytochrome c oxidase from Paracoccus denitrificansIris von der Hocht, Jessica H. van Wonderen, Florian Hilbers, Heike Angerer, Fraser MacMillan, and Hartmut Michel
- You have accessPeriplasmic vestibule plays an important role for solute recruitment, selectivity, and gating in the Rh/Amt/MEP superfamilyUgur Akgun and Shahram Khademi
Cell Biology
- You have accessStructures of the atlastin GTPase provide insight into homotypic fusion of endoplasmic reticulum membranesXin Bian, Robin W. Klemm, Tina Y. Liu, Miao Zhang, Sha Sun, Xuewu Sui, Xinqi Liu, Tom A. Rapoport, and Junjie Hu
- You have accessMicrotubule depolymerization in Caenorhabditis elegans touch receptor neurons reduces gene expression through a p38 MAPK pathwayAlexander Bounoutas, John Kratz, Lesley Emtage, Charles Ma, Ken C. Nguyen, and Martin Chalfie
- You have accessGTPγS microtubules mimic the growing microtubule end structure recognized by end-binding proteins (EBs)Sebastian P. Maurer, Peter Bieling, Julia Cope, Andreas Hoenger, and Thomas Surrey
- You have accessTemperature-sensitive ipl1-2/Aurora B mutation is suppressed by mutations in TOR complex 1 via the Glc7/PP1 phosphataseKelly Tatchell, Vasso Makrantoni, Michael J. R. Stark, and Lucy C. Robinson
- You have accessLarge-scale mechanical properties of Xenopus embryonic epitheliumOlivia Luu, Robert David, Hiromasa Ninomiya, and Rudolf Winklbauer
Developmental Biology
- You have accessTranscription factor genes Smad4 and Gata4 cooperatively regulate cardiac valve developmentIvan P. Moskowitz, Jun Wang, Michael A. Peterson, William T. Pu, Alexander C. Mackinnon, Leif Oxburgh, Gerald C. Chu, Molly Sarkar, Charles Berul, Leslie Smoot, Elizabeth J. Robertson, Robert Schwartz, Jonathan G. Seidman, and Christine E. Seidman
- You have accessPaternal MHC expression on mouse trophoblast affects uterine vascularization and fetal growth
- From the Cover
Zofia Madeja, Hakim Yadi, Richard Apps, Selma Boulenouar, Stephen J. Roper, Lucy Gardner, Ashley Moffett, Francesco Colucci, and Myriam HembergerSee companion article:
- You have accessFGF4 and FGF8 comprise the wavefront activity that controls somitogenesisL. A. Naiche, Nakisha Holder, and Mark Lewandoski
Ecology
- You have accessAnthropogenic and environmental drivers of modern range loss in large mammalsCharles B. Yackulic, Eric W. Sanderson, and María Uriarte
- You have accessGrazer cues induce stealth behavior in marine dinoflagellatesErik Selander, Hans H. Jakobsen, Fabien Lombard, and Thomas Kiørboe
Environmental Sciences
- You have accessEfficiency of the CO2-concentrating mechanism of diatoms
- Inaugural Article
Brian M. Hopkinson, Christopher L. Dupont, Andrew E. Allen, and François M. M. Morel - Open AccessGlobal CO2 rise leads to reduced maximum stomatal conductance in Florida vegetationEmmy I. Lammertsma, Hugo Jan de Boer, Stefan C. Dekker, David L. Dilcher, André F. Lotter, and Friederike Wagner-Cremer
- Open AccessClimate forcing due to optimization of maximal leaf conductance in subtropical vegetation under rising CO2Hugo Jan de Boer, Emmy I. Lammertsma, Friederike Wagner-Cremer, David L. Dilcher, Martin J. Wassen, and Stefan C. Dekker
Evolution
- Open AccessThe population dynamics of bacteria in physically structured habitats and the adaptive virtue of random motilityYan Wei, Xiaolin Wang, Jingfang Liu, Ilya Nememan, Amoolya H. Singh, Howie Weiss, and Bruce R. Levin
- You have accessEvolution of cold-tolerant fungal symbionts permits winter fungiculture by leafcutter ants at the northern frontier of a tropical ant–fungus symbiosisUlrich G. Mueller, Alexander S. Mikheyev, Eunki Hong, Ruchira Sen, Dan L. Warren, Scott E. Solomon, Heather D. Ishak, Mike Cooper, Jessica L. Miller, Kimberly A. Shaffer, and Thomas E. Juenger
- You have accessTwo developmental modules establish 3D beak-shape variation in Darwin's finchesRicardo Mallarino, Peter R. Grant, B. Rosemary Grant, Anthony Herrel, Winston P. Kuo, and Arhat Abzhanov
Genetics
- You have accessCaenorhabditis elegans aristaless/Arx gene alr-1 restricts variable gene expressionIrini Topalidou, Alexander van Oudenaarden, and Martin Chalfie
- You have accessDifferentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene lossJames C. Schnable, Nathan M. Springer, and Michael Freeling
Immunology
- Open AccessClaudin-4 induction by E-protein activity in later stages of CD4/8 double-positive thymocytes to increase positive selection efficiencyYohei Kawai, Yoko Hamazaki, Harumi Fujita, Akikazu Fujita, Takehito Sato, Mikio Furuse, Toyoshi Fujimoto, Anton M. Jetten, Yasutoshi Agata, and Nagahiro Minato
- You have accessExpression, signaling proficiency, and stimulatory function of the NKG2D lymphocyte receptor in human cancer cellsAndrea Caballero Benitez, Zhenpeng Dai, Henning H. Mann, Rebecca S. Reeves, Daciana H. Margineantu, Ted A. Gooley, Veronika Groh, and Thomas Spies
Medical Sciences
- You have accessOligosaccharide conjugates of Bordetella pertussis and bronchiseptica induce bactericidal antibodies, an addition to pertussis vaccineJoanna Kubler-Kielb, Evgeny Vinogradov, Teresa Lagergård, Ariel Ginzberg, Jerry D. King, Andrew Preston, Duncan J. Maskell, Vince Pozsgay, Jerry M. Keith, John B. Robbins, and Rachel Schneerson
- You have accessWounding mobilizes hair follicle stem cells to form tumors
- From the Cover
Sunny Y. Wong and Jeremy F. Reiter - Open AccessWounding enhances epidermal tumorigenesis by recruiting hair follicle keratinocytesMaria Kasper, Viljar Jaks, Alexandra Are, Åsa Bergström, Anja Schwäger, Jessica Svärd, Stephan Teglund, Nick Barker, and Rune Toftgård
- You have accessBenzoquinone ansamycin 17AAG binds to mitochondrial voltage-dependent anion channel and inhibits cell invasionQian Xie, Robert Wondergem, Yuehai Shen, Greg Cavey, Jiyuan Ke, Ryan Thompson, Robert Bradley, Jennifer Daugherty-Holtrop, Yong Xu, Edwin Chen, Hanan Omar, Neal Rosen, David Wenkert, H. Eric Xu, and George F. Vande Woude
- You have accessCortisone-reductase deficiency associated with heterozygous mutations in 11β-hydroxysteroid dehydrogenase type 1Alexander J. Lawson, Elizabeth A. Walker, Gareth G. Lavery, Iwona J. Bujalska, Beverly Hughes, Wiebke Arlt, Paul M. Stewart, and Jonathan P. Ride
- You have accessAntiangiogenic agents significantly improve survival in tumor-bearing mice by increasing tolerance to chemotherapy-induced toxicityDanfang Zhang, Eva-Maria E. Hedlund, Sharon Lim, Fang Chen, Yin Zhang, Baocun Sun, and Yihai Cao
- You have accessHistone deacetylase (HDAC) inhibitors attenuate cardiac hypertrophy by suppressing autophagyDian J. Cao, Zhao V. Wang, Pavan K. Battiprolu, Nan Jiang, Cyndi R. Morales, Yongli Kong, Beverly A. Rothermel, Thomas G. Gillette, and Joseph A. Hill
- You have accessMammalian target of rapamycin up-regulation of pyruvate kinase isoenzyme type M2 is critical for aerobic glycolysis and tumor growthQian Sun, Xinxin Chen, Jianhui Ma, Haiyong Peng, Fang Wang, Xiaojun Zha, Yanan Wang, Yanling Jing, Hongwang Yang, Rongrong Chen, Long Chang, Yu Zhang, June Goto, Hiroaki Onda, Tong Chen, Ming-Rong Wang, Youyong Lu, Han You, David Kwiatkowski, and Hongbing Zhang
- You have accessEndurance exercise rescues progeroid aging and induces systemic mitochondrial rejuvenation in mtDNA mutator miceAdeel Safdar, Jacqueline M. Bourgeois, Daniel I. Ogborn, Jonathan P. Little, Bart P. Hettinga, Mahmood Akhtar, James E. Thompson, Simon Melov, Nicholas J. Mocellin, Gregory C. Kujoth, Tomas A. Prolla, and Mark A. Tarnopolsky
- You have accessEradication of solid tumors using histone deacetylase inhibitors combined with immune-stimulating antibodiesAilsa J. Christiansen, Alison West, Kellie-Marie Banks, Nicole M. Haynes, Michele W. Teng, Mark J. Smyth, and Ricky W. Johnstone
Microbiology
- You have accessMicrobubbles reveal chiral fluid flows in bacterial swarmsYilin Wu, Basarab G. Hosu, and Howard C. Berg
- You have accessSystems-level analysis of microbial community organization through combinatorial labeling and spectral imaging
- From the Cover
Alex M. Valm, Jessica L. Mark Welch, Christopher W. Rieken, Yuko Hasegawa, Mitchell L. Sogin, Rudolf Oldenbourg, Floyd E. Dewhirst, and Gary G. Borisy - You have accessBacterial community structures are unique and resilient in full-scale bioenergy systemsJeffrey J. Werner, Dan Knights, Marcelo L. Garcia, Nicholas B. Scalfone, Samual Smith, Kevin Yarasheski, Theresa A. Cummings, Allen R. Beers, Rob Knight, and Largus T. Angenent
- You have accessHigh genetic compatibility and increased pathogenicity of reassortants derived from avian H9N2 and pandemic H1N1/2009 influenza virusesYipeng Sun, Kun Qin, Jingjing Wang, Juan Pu, Qingdong Tang, Yanxin Hu, Yuhai Bi, Xueli Zhao, Hanchun Yang, Yuelong Shu, and Jinhua Liu
- You have accessAmmonia oxidation coupled to CO2 fixation by archaea and bacteria in an agricultural soilJennifer Pratscher, Marc G. Dumont, and Ralf Conrad
- You have accessDepletion of antibiotic targets has widely varying effects on growthJun-Rong Wei, Vidhya Krishnamoorthy, Kenan Murphy, Jee-Hyun Kim, Dirk Schnappinger, Tom Alber, Christopher M. Sassetti, Kyu Y. Rhee, and Eric J. Rubin
Neuroscience
- You have accessAttention-driven auditory cortex short-term plasticity helps segregate relevant sounds from noiseJyrki Ahveninen, Matti Hämäläinen, Iiro P. Jääskeläinen, Seppo P. Ahlfors, Samantha Huang, Fa-Hsuan Lin, Tommi Raij, Mikko Sams, Christos E. Vasios, and John W. Belliveau
- Open AccessThree-dimensional axon morphologies of individual layer 5 neurons indicate cell type-specific intracortical pathways for whisker motion and touchMarcel Oberlaender, Zimbo S. R. M. Boudewijns, Tatjana Kleele, Huibert D. Mansvelder, Bert Sakmann, and Christiaan P. J. de Kock
- Open AccessIn vivo demonstration that α-synuclein oligomers are toxicBeate Winner, Roberto Jappelli, Samir K. Maji, Paula A. Desplats, Leah Boyer, Stefan Aigner, Claudia Hetzer, Thomas Loher, Marçal Vilar, Silvia Campioni, Christos Tzitzilonis, Alice Soragni, Sebastian Jessberger, Helena Mira, Antonella Consiglio, Emiley Pham, Eliezer Masliah, Fred H. Gage, and Roland Riek
- You have accessMultiple coregulatory control of tyrosine hydroxylase gene transcriptionSirigiri Divijendra Natha Reddy, Suresh K. Rayala, Kazufumi Ohshiro, Suresh B. Pakala, Nobuhide Kobori, Pramod Dash, Sung Yun, Jun Qin, Bert W. O'Malley, and Rakesh Kumar
- Open AccessBalanced NMDA receptor activity in dopamine D1 receptor (D1R)- and D2R-expressing medium spiny neurons is required for amphetamine sensitizationLisa R. Beutler, Matthew J. Wanat, Albert Quintana, Elisenda Sanz, Nigel S. Bamford, Larry S. Zweifel, and Richard D. Palmiter
- You have accessCombined transcriptome analysis of fetal human and mouse cerebral cortex exposed to alcoholKazue Hashimoto-Torii, Yuka Imamura Kawasawa, Alexandre Kuhn, and Pasko Rakic
- Open AccessCarcinoembryonic antigen-related cell adhesion molecule 16 interacts with α-tectorin and is mutated in autosomal dominant hearing loss (DFNA4)Jing Zheng, Katharine K. Miller, Tao Yang, Michael S. Hildebrand, A. Eliot Shearer, Adam P. DeLuca, Todd E. Scheetz, Jennifer Drummond, Steve E. Scherer, P. Kevin Legan, Richard J. Goodyear, Guy P. Richardson, Mary Ann Cheatham, Richard J. Smith, and Peter Dallos
- You have accessCompound eyes and retinal information processing in miniature dipteran species match their specific ecological demandsPaloma T. Gonzalez-Bellido, Trevor J. Wardill, and Mikko Juusola
- You have accessDistributed and causal influence of frontal operculum in task controlTakayasu Higo, Rogier B. Mars, Erie D. Boorman, Ethan R. Buch, and Matthew F. S. Rushworth
- You have accessC-terminal-truncated apolipoprotein (apo) E4 inefficiently clears amyloid-β (Aβ) and acts in concert with Aβ to elicit neuronal and behavioral deficits in miceNga Bien-Ly, Yaisa Andrews-Zwilling, Qin Xu, Aubrey Bernardo, Charles Wang, and Yadong Huang
- Open AccessEpigenetic control of vasopressin expression is maintained by steroid hormones in the adult male rat brainCatherine J. Auger, Dylan Coss, Anthony P. Auger, and Robin M. Forbes-Lorman
Physiology
- You have accessFish as major carbonate mud producers and missing components of the tropical carbonate factoryChris T. Perry, Michael A. Salter, Alastair R. Harborne, Stephen F. Crowley, Howard L. Jelks, and Rod W. Wilson
Plant Biology
- You have accessRecent warming by latitude associated with increased length of ragweed pollen season in central North AmericaLewis Ziska, Kim Knowlton, Christine Rogers, Dan Dalan, Nicole Tierney, Mary Ann Elder, Warren Filley, Jeanne Shropshire, Linda B. Ford, Curtis Hedberg, Pamela Fleetwood, Kim T. Hovanky, Tony Kavanaugh, George Fulford, Rose F. Vrtis, Jonathan A. Patz, Jay Portnoy, Frances Coates, Leonard Bielory, and David Frenz
Population Biology
- You have accessHundred years of genetic structure in a sediment revived diatom population
- From the Cover
Karolina Härnström, Marianne Ellegaard, Thorbjørn J. Andersen, and Anna GodheSee companion article:
Systems Biology
- You have accessTopology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactionsMuyoung Heo, Sergei Maslov, and Eugene Shakhnovich
Commentaries
See companion article:
See companion article: