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Table of Contents
March 15, 2011; vol. 108 no. Supplement 1
Introduction
Colloquium Papers (free online)
- You have accessGlobal patterns of 16S rRNA diversity at a depth of millions of sequences per sampleJ. Gregory Caporaso, Christian L. Lauber, William A. Walters, Donna Berg-Lyons, Catherine A. Lozupone, Peter J. Turnbaugh, Noah Fierer, and Rob KnightPNAS March 15, 2011 108 (Supplement 1) 4516-4522; first published June 3, 2010. https://doi.org/10.1073/pnas.1000080107
- You have accessSystemic gut microbial modulation of bile acid metabolism in host tissue compartmentsJonathan R. Swann, Elizabeth J. Want, Florian M. Geier, Konstantina Spagou, Ian D. Wilson, James E. Sidaway, Jeremy K. Nicholson, and Elaine HolmesPNAS March 15, 2011 108 (Supplement 1) 4523-4530; first published September 13, 2010. https://doi.org/10.1073/pnas.1006734107
- You have accessMetabolic fate of polyphenols in the human superorganismJohn van Duynhoven, Elaine E. Vaughan, Doris M. Jacobs, Robèr A. Kemperman, Ewoud J. J. van Velzen, Gabriele Gross, Laure C. Roger, Sam Possemiers, Age K. Smilde, Joël Doré, Johan A. Westerhuis, and Tom Van de WielePNAS March 15, 2011 108 (Supplement 1) 4531-4538; first published June 25, 2010. https://doi.org/10.1073/pnas.1000098107
- You have accessA metagenomic β-glucuronidase uncovers a core adaptive function of the human intestinal microbiomeKarine Gloux, Olivier Berteau, Hanane El oumami, Fabienne Béguet, Marion Leclerc, and Joël DoréPNAS March 15, 2011 108 (Supplement 1) 4539-4546; first published June 25, 2010. https://doi.org/10.1073/pnas.1000066107
- You have accessMetagenomic detection of phage-encoded platelet-binding factors in the human oral cavityDana Willner, Mike Furlan, Robert Schmieder, Juris A. Grasis, David T. Pride, David A. Relman, Florent E. Angly, Tracey McDole, Ray P. Mariella Jr, Forest Rohwer, and Matthew HaynesPNAS March 15, 2011 108 (Supplement 1) 4547-4553; first published June 14, 2010. https://doi.org/10.1073/pnas.1000089107
- You have accessIncomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbationLes Dethlefsen and David A. RelmanPNAS March 15, 2011 108 (Supplement 1) 4554-4561; first published September 16, 2010. https://doi.org/10.1073/pnas.1000087107
- You have accessHuman mucosal in vivo transcriptome responses to three lactobacilli indicate how probiotics may modulate human cellular pathwaysPeter van Baarlen, Freddy Troost, Cindy van der Meer, Guido Hooiveld, Mark Boekschoten, Robert J. M. Brummer, and Michiel KleerebezemPNAS March 15, 2011 108 (Supplement 1) 4562-4569; first published September 7, 2010. https://doi.org/10.1073/pnas.1000079107
- You have accessEpithelial cell proliferation in the developing zebrafish intestine is regulated by the Wnt pathway and microbial signaling via Myd88Sarah E. Cheesman, James T. Neal, Erika Mittge, Barbara M. Seredick, and Karen GuilleminPNAS March 15, 2011 108 (Supplement 1) 4570-4577; first published October 4, 2010. https://doi.org/10.1073/pnas.1000072107
- You have accessSuccession of microbial consortia in the developing infant gut microbiomeJeremy E. Koenig, Aymé Spor, Nicholas Scalfone, Ashwana D. Fricker, Jesse Stombaugh, Rob Knight, Largus T. Angenent, and Ruth E. LeyPNAS March 15, 2011 108 (Supplement 1) 4578-4585; first published July 28, 2010. https://doi.org/10.1073/pnas.1000081107
- You have accessComposition, variability, and temporal stability of the intestinal microbiota of the elderlyMarcus J. Claesson, Siobhán Cusack, Orla O'Sullivan, Rachel Greene-Diniz, Heleen de Weerd, Edel Flannery, Julian R. Marchesi, Daniel Falush, Timothy Dinan, Gerald Fitzgerald, Catherine Stanton, Douwe van Sinderen, Michael O'Connor, Norma Harnedy, Kieran O'Connor, Colm Henry, Denis O'Mahony, Anthony P. Fitzgerald, Fergus Shanahan, Cillian Twomey, Colin Hill, R. Paul Ross, and Paul W. O'ToolePNAS March 15, 2011 108 (Supplement 1) 4586-4591; first published June 22, 2010. https://doi.org/10.1073/pnas.1000097107
- You have accessHuman oral, gut, and plaque microbiota in patients with atherosclerosisOmry Koren, Aymé Spor, Jenny Felin, Frida Fåk, Jesse Stombaugh, Valentina Tremaroli, Carl Johan Behre, Rob Knight, Björn Fagerberg, Ruth E. Ley, and Fredrik BäckhedPNAS March 15, 2011 108 (Supplement 1) 4592-4598; first published October 11, 2010. https://doi.org/10.1073/pnas.1011383107
- You have accessPan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twinsElizabeth E. Hansen, Catherine A. Lozupone, Federico E. Rey, Meng Wu, Janaki L. Guruge, Aneesha Narra, Jonathan Goodfellow, Jesse R. Zaneveld, Daniel T. McDonald, Julia A. Goodrich, Andrew C. Heath, Rob Knight, and Jeffrey I. GordonPNAS March 15, 2011 108 (Supplement 1) 4599-4606; first published February 11, 2011. https://doi.org/10.1073/pnas.1000071108
- You have accessEpithelial crosstalk at the microbiota–mucosal interfaceJerry M. Wells, Oriana Rossi, Marjolein Meijerink, and Peter van BaarlenPNAS March 15, 2011 108 (Supplement 1) 4607-4614; first published September 8, 2010. https://doi.org/10.1073/pnas.1000092107
- You have accessProinflammatory T-cell responses to gut microbiota promote experimental autoimmune encephalomyelitisYun Kyung Lee, Juscilene S. Menezes, Yoshinori Umesaki, and Sarkis K. MazmanianPNAS March 15, 2011 108 (Supplement 1) 4615-4622; first published July 26, 2010. https://doi.org/10.1073/pnas.1000082107
- You have accessRegulation of induced colonic inflammation by Lactobacillus acidophilus deficient in lipoteichoic acidMansour Mohamadzadeh, Erika A. Pfeiler, Jeffrey B. Brown, Mojgan Zadeh, Matthew Gramarossa, Elizabeth Managlia, Praveen Bere, Bara Sarraj, Mohammad W. Khan, Krishna Chaitanya Pakanati, M. Javeed Ansari, Sarah O'Flaherty, Terrence Barrett, and Todd R. KlaenhammerPNAS March 15, 2011 108 (Supplement 1) 4623-4630; first published January 31, 2011. https://doi.org/10.1073/pnas.1005066107
- You have accessHuman leucine-rich repeat proteins: a genome-wide bioinformatic categorization and functional analysis in innate immunityAylwin C. Y. Ng, Jason M. Eisenberg, Robert J. W. Heath, Alan Huett, Cory M. Robinson, Gerard J. Nau, and Ramnik J. XavierPNAS March 15, 2011 108 (Supplement 1) 4631-4638; first published June 29, 2010. https://doi.org/10.1073/pnas.1000093107
- You have accessEffect of broad- and narrow-spectrum antimicrobials on Clostridium difficile and microbial diversity in a model of the distal colonMary C. Rea, Alleson Dobson, Orla O'Sullivan, Fiona Crispie, Fiona Fouhy, Paul D. Cotter, Fergus Shanahan, Barry Kiely, Colin Hill, and R. Paul RossPNAS March 15, 2011 108 (Supplement 1) 4639-4644; first published June 29, 2010. https://doi.org/10.1073/pnas.1001224107
- You have accessHost-microbial symbiosis in the vertebrate gastrointestinal tract and the Lactobacillus reuteri paradigmJens Walter, Robert A. Britton, and Stefan RoosPNAS March 15, 2011 108 (Supplement 1) 4645-4652; first published June 25, 2010. https://doi.org/10.1073/pnas.1000099107
- You have accessHuman milk glycobiome and its impact on the infant gastrointestinal microbiotaAngela M. Zivkovic, J. Bruce German, Carlito B. Lebrilla, and David A. MillsPNAS March 15, 2011 108 (Supplement 1) 4653-4658; first published August 2, 2010. https://doi.org/10.1073/pnas.1000083107
- You have accessThe two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host–microbial interactionsMalin E. V. Johansson, Jessica M. Holmén Larsson, and Gunnar C. HanssonPNAS March 15, 2011 108 (Supplement 1) 4659-4665; first published June 25, 2010. https://doi.org/10.1073/pnas.1006451107
- You have accessMembrane sphingolipids as essential molecular signals for Bacteroides survival in the intestineDingding An, Chongzheng Na, Jacek Bielawski, Yusuf A. Hannun, and Dennis L. KasperPNAS March 15, 2011 108 (Supplement 1) 4666-4671; first published September 20, 2010. https://doi.org/10.1073/pnas.1001501107
- You have accessSubstrate-driven gene expression in Roseburia inulinivorans: Importance of inducible enzymes in the utilization of inulin and starchKaren P. Scott, Jenny C. Martin, Christophe Chassard, Marlene Clerget, Joanna Potrykus, Gill Campbell, Claus-Dieter Mayer, Pauline Young, Garry Rucklidge, Alan G. Ramsay, and Harry J. FlintPNAS March 15, 2011 108 (Supplement 1) 4672-4679; first published August 2, 2010. https://doi.org/10.1073/pnas.1000091107
- You have accessVaginal microbiome of reproductive-age womenJacques Ravel, Pawel Gajer, Zaid Abdo, G. Maria Schneider, Sara S. K. Koenig, Stacey L. McCulle, Shara Karlebach, Reshma Gorle, Jennifer Russell, Carol O. Tacket, Rebecca M. Brotman, Catherine C. Davis, Kevin Ault, Ligia Peralta, and Larry J. ForneyPNAS March 15, 2011 108 (Supplement 1) 4680-4687; first published June 3, 2010. https://doi.org/10.1073/pnas.1002611107
- You have accessAt the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1Jean M. Macklaim, Gregory B. Gloor, Kingsley C. Anukam, Sarah Cribby, and Gregor ReidPNAS March 15, 2011 108 (Supplement 1) 4688-4695; first published November 8, 2010. https://doi.org/10.1073/pnas.1000086107