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Research Article

Social environment is associated with gene regulatory variation in the rhesus macaque immune system

Jenny Tung, Luis B. Barreiro, Zachary P. Johnson, Kasper D. Hansen, Vasiliki Michopoulos, Donna Toufexis, Katelyn Michelini, Mark E. Wilson, and Yoav Gilad
  1. aDepartment of Human Genetics, University of Chicago, Chicago, IL 60637;
  2. bYerkes National Primate Research Center, Emory University, Atlanta, GA 30322;
  3. cDepartment of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21202; and
  4. dDepartment of Psychology, University of Vermont, Burlington, VT 05405

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PNAS April 24, 2012 109 (17) 6490-6495; https://doi.org/10.1073/pnas.1202734109
Jenny Tung
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  • For correspondence: jt5@duke.edu gilad@uchicago.edu
Luis B. Barreiro
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Zachary P. Johnson
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Kasper D. Hansen
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Vasiliki Michopoulos
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Donna Toufexis
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Katelyn Michelini
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Mark E. Wilson
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Yoav Gilad
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  • For correspondence: jt5@duke.edu gilad@uchicago.edu
  1. Edited by Gene E. Robinson, University of Illinois at Urbana–Champaign, Urbana, IL, and approved March 6, 2012 (received for review February 15, 2012)

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Abstract

Variation in the social environment is a fundamental component of many vertebrate societies. In humans and other primates, adverse social environments often translate into lasting physiological costs. The biological mechanisms associated with these effects are therefore of great interest, both for understanding the evolutionary impacts of social behavior and in the context of human health. However, large gaps remain in our understanding of the mechanisms that mediate these effects at the molecular level. Here we addressed these questions by leveraging the power of an experimental system that consisted of 10 social groups of female macaques, in which each individual's social status (i.e., dominance rank) could be experimentally controlled. Using this paradigm, we show that dominance rank results in a widespread, yet plastic, imprint on gene regulation, such that peripheral blood mononuclear cell gene expression data alone predict social status with 80% accuracy. We investigated the mechanistic basis of these effects using cell type-specific gene expression profiling and glucocorticoid resistance assays, which together contributed to rank effects on gene expression levels for 694 (70%) of the 987 rank-related genes. We also explored the possible contribution of DNA methylation levels to these effects, and identified global associations between dominance rank and methylation profiles that suggest epigenetic flexibility in response to status-related behavioral cues. Together, these results illuminate the importance of the molecular response to social conditions, particularly in the immune system, and demonstrate a key role for gene regulation in linking the social environment to individual physiology.

  • inflammation
  • social gradient
  • differential gene expression
  • sociogenomics

Footnotes

  • ↵1To whom correspondence may be addressed. E-mail: jt5{at}duke.edu or gilad{at}uchicago.edu.
  • ↵2Present address: Department of Evolutionary Anthropology and Duke Population Research Institute, Duke University, Durham, NC 27708.

  • ↵3Present address: Department of Pediatrics, Sainte-Justine Hospital Research Centre, University of Montreal, Montreal, QC, Canada H3T 1C5.

  • Author contributions: M.E.W. and Y.G. designed research; J.T., L.B.B., Z.P.J., V.M., and K.M. performed research; J.T., L.B.B., Z.P.J., K.D.H., D.T., M.E.W., and Y.G. contributed new reagents/analytic tools; J.T., L.B.B., and K.D.H. analyzed data; and J.T., L.B.B., Z.P.J., K.D.H., V.M., D.T., M.E.W., and Y.G. wrote the paper.

  • The authors declare no conflict of interest.

  • This article is a PNAS Direct Submission.

  • Data deposition: The sequence (bisulfite sequencing for DNA methylation) and gene expression datasets reported in this paper have been deposited in the Gene Expression Omnibus (GEO) database, www.ncbi.nlm.nih.gov/geo (SuperSeries no. GSE34129).

  • This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1202734109/-/DCSupplemental.

Freely available online through the PNAS open access option.

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Dominance rank and gene expression in macaques
Jenny Tung, Luis B. Barreiro, Zachary P. Johnson, Kasper D. Hansen, Vasiliki Michopoulos, Donna Toufexis, Katelyn Michelini, Mark E. Wilson, Yoav Gilad
Proceedings of the National Academy of Sciences Apr 2012, 109 (17) 6490-6495; DOI: 10.1073/pnas.1202734109

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Dominance rank and gene expression in macaques
Jenny Tung, Luis B. Barreiro, Zachary P. Johnson, Kasper D. Hansen, Vasiliki Michopoulos, Donna Toufexis, Katelyn Michelini, Mark E. Wilson, Yoav Gilad
Proceedings of the National Academy of Sciences Apr 2012, 109 (17) 6490-6495; DOI: 10.1073/pnas.1202734109
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  • Biological Sciences
  • Anthropology
Proceedings of the National Academy of Sciences: 109 (17)
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