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Research Article

Room temperature femtosecond X-ray diffraction of photosystem II microcrystals

Jan Kern, Roberto Alonso-Mori, Julia Hellmich, Rosalie Tran, Johan Hattne, Hartawan Laksmono, Carina Glöckner, Nathaniel Echols, Raymond G. Sierra, Jonas Sellberg, Benedikt Lassalle-Kaiser, Richard J. Gildea, Pieter Glatzel, Ralf W. Grosse-Kunstleve, Matthew J. Latimer, Trevor A. McQueen, Dörte DiFiore, Alan R. Fry, Marc Messerschmidt, Alan Miahnahri, Donald W. Schafer, M. Marvin Seibert, Dimosthenis Sokaras, Tsu-Chien Weng, Petrus H. Zwart, William E. White, Paul D. Adams, Michael J. Bogan, Sébastien Boutet, Garth J. Williams, Johannes Messinger, Nicholas K. Sauter, Athina Zouni, Uwe Bergmann, Junko Yano, and Vittal K. Yachandra
  1. aPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720;
  2. bLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025;
  3. cMax-Volmer-Laboratorium für Biophysikalische Chemie, Technische Universität Berlin, D-10623 Berlin, Germany;
  4. dPULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA 94025;
  5. eStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025;
  6. fDepartment of Physics, AlbaNova, Stockholm University, S-106 91 Stockholm, Sweden;
  7. gEuropean Synchrotron Radiation Facility, BP 220, F-38043 Grenoble Cedex, France;
  8. hDepartment of Chemistry, Stanford University, Stanford, CA 94025; and
  9. iInstitutionen för Kemi, Kemiskt Biologiskt Centrum, Umeå Universitet, S-901 87 Umeå, Sweden

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PNAS June 19, 2012 109 (25) 9721-9726; https://doi.org/10.1073/pnas.1204598109
Jan Kern
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Roberto Alonso-Mori
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Julia Hellmich
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Rosalie Tran
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Johan Hattne
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Hartawan Laksmono
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Carina Glöckner
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Nathaniel Echols
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Raymond G. Sierra
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Jonas Sellberg
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Benedikt Lassalle-Kaiser
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Richard J. Gildea
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Pieter Glatzel
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Ralf W. Grosse-Kunstleve
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Matthew J. Latimer
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Trevor A. McQueen
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Dörte DiFiore
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Alan R. Fry
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Marc Messerschmidt
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Alan Miahnahri
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Donald W. Schafer
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M. Marvin Seibert
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Dimosthenis Sokaras
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Tsu-Chien Weng
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Petrus H. Zwart
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William E. White
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Paul D. Adams
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Michael J. Bogan
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Sébastien Boutet
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Garth J. Williams
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Johannes Messinger
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Nicholas K. Sauter
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Athina Zouni
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Uwe Bergmann
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  • For correspondence: ubergmann@slac.stanford.edu jyano@lbl.gov vkyachandra@lbl.gov
Junko Yano
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  • For correspondence: ubergmann@slac.stanford.edu jyano@lbl.gov vkyachandra@lbl.gov
Vittal K. Yachandra
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  • For correspondence: ubergmann@slac.stanford.edu jyano@lbl.gov vkyachandra@lbl.gov
  1. Edited by* Edward I. Solomon, Stanford University, Stanford, CA, and approved May 2, 2012 (received for review March 20, 2012)

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Abstract

Most of the dioxygen on earth is generated by the oxidation of water by photosystem II (PS II) using light from the sun. This light-driven, four-photon reaction is catalyzed by the Mn4CaO5 cluster located at the lumenal side of PS II. Various X-ray studies have been carried out at cryogenic temperatures to understand the intermediate steps involved in the water oxidation mechanism. However, the necessity for collecting data at room temperature, especially for studying the transient steps during the O–O bond formation, requires the development of new methodologies. In this paper we report room temperature X-ray diffraction data of PS II microcrystals obtained using ultrashort (< 50 fs) 9 keV X-ray pulses from a hard X-ray free electron laser, namely the Linac Coherent Light Source. The results presented here demonstrate that the ”probe before destroy” approach using an X-ray free electron laser works even for the highly-sensitive Mn4CaO5 cluster in PS II at room temperature. We show that these data are comparable to those obtained in synchrotron radiation studies as seen by the similarities in the overall structure of the helices, the protein subunits and the location of the various cofactors. This work is, therefore, an important step toward future studies for resolving the structure of the Mn4CaO5 cluster without any damage at room temperature, and of the reaction intermediates of PS II during O–O bond formation.

  • manganese
  • oxygen-evolving complex

Footnotes

  • ↵1To whom correspondence may be addressed. E-mail: ubergmann{at}slac.stanford.edu or jyano{at}lbl.gov or vkyachandra{at}lbl.gov.
  • Author contributions: U.B., J.Y., and V.K.Y. conceived experiment; J.K., R.A.-M., A.R.F., A.M., D.W.S., W.E.W., M.J.B., S.B., G.J.W., J.M., N.K.S., A.Z., U.B., J.Y., and V.K.Y. designed experiment; J.K., J. Hellmich, R.T., C.G., D.D., and A.Z. prepared samples; M.M., M.M.S., S.B., and G.J.W. ran the CXI instrument; J.K., J. Hellmich, R.T., H.L., C.G., R.G.S., J.S., B.L.-K., T.A.M., A.M., D.W.S., M.J.B., G.J.W., and J.M. developed, tested, and ran the sample delivery system; J.K., R.A.-M., J. Hellmich, R.T., J. Hattne, H.L., C.G., N.E., R.G.S., J.S., B.L.-K., R.J.G., P.G., M.J.L., T.A.M., M.M., M.M.S., D.S., T.-C.W., M.J.B., S.B., G.J.W., J.M., N.K.S., A.Z., U.B., J.Y., and V.K.Y. performed the experiment; J. Hattne, N.E., R.J.G., R.W.G.-K., M.M., P.H.Z., P.D.A., and N.K.S. developed new software and processed data; and J.K., J.M., N.K.S., A.Z., U.B., J.Y., and V.K.Y. wrote the paper.

  • The authors declare no conflict of interest.

  • *This Direct Submission article had a prearranged editor.

  • Data deposition: The atomic coordinates and structure factors have been deposited in the Protein Data Bank, www.pdb.org (PDB ID code 4FBY).

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fs X-ray diffraction of photosystem II
Jan Kern, Roberto Alonso-Mori, Julia Hellmich, Rosalie Tran, Johan Hattne, Hartawan Laksmono, Carina Glöckner, Nathaniel Echols, Raymond G. Sierra, Jonas Sellberg, Benedikt Lassalle-Kaiser, Richard J. Gildea, Pieter Glatzel, Ralf W. Grosse-Kunstleve, Matthew J. Latimer, Trevor A. McQueen, Dörte DiFiore, Alan R. Fry, Marc Messerschmidt, Alan Miahnahri, Donald W. Schafer, M. Marvin Seibert, Dimosthenis Sokaras, Tsu-Chien Weng, Petrus H. Zwart, William E. White, Paul D. Adams, Michael J. Bogan, Sébastien Boutet, Garth J. Williams, Johannes Messinger, Nicholas K. Sauter, Athina Zouni, Uwe Bergmann, Junko Yano, Vittal K. Yachandra
Proceedings of the National Academy of Sciences Jun 2012, 109 (25) 9721-9726; DOI: 10.1073/pnas.1204598109

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fs X-ray diffraction of photosystem II
Jan Kern, Roberto Alonso-Mori, Julia Hellmich, Rosalie Tran, Johan Hattne, Hartawan Laksmono, Carina Glöckner, Nathaniel Echols, Raymond G. Sierra, Jonas Sellberg, Benedikt Lassalle-Kaiser, Richard J. Gildea, Pieter Glatzel, Ralf W. Grosse-Kunstleve, Matthew J. Latimer, Trevor A. McQueen, Dörte DiFiore, Alan R. Fry, Marc Messerschmidt, Alan Miahnahri, Donald W. Schafer, M. Marvin Seibert, Dimosthenis Sokaras, Tsu-Chien Weng, Petrus H. Zwart, William E. White, Paul D. Adams, Michael J. Bogan, Sébastien Boutet, Garth J. Williams, Johannes Messinger, Nicholas K. Sauter, Athina Zouni, Uwe Bergmann, Junko Yano, Vittal K. Yachandra
Proceedings of the National Academy of Sciences Jun 2012, 109 (25) 9721-9726; DOI: 10.1073/pnas.1204598109
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