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Table of Contents

January 29, 2013; vol. 110 no. 5

This Week in PNAS

  • You have access
    In This Issue
    PNAS January 29, 2013 110 (5) 1563-1564; https://doi.org/10.1073/iti0513110

    See companion article:

    • Motor function, exercise, obesity, and academics
      - Dec 31, 2012
    • Mass spectrometry for brain tumor diagnosis
      - Jan 08, 2013
    • Oil sands PAH legacy
      - Jan 07, 2013
    • Inflammasome-mediated venom defense
      - Jan 07, 2013

Letters (Online Only)

  • You have access
    Don’t waste good methods on bad buffers and ambiguous data
    Fang Huang, Christopher M. Johnson, Miriana Petrovich, and Alan R. Fersht
    PNAS January 29, 2013 110 (5) E331-E332; https://doi.org/10.1073/pnas.1217840110

    See companion article:

    • Phosphate is a bad buffer for GdmCl titrations
      - Mar 26, 2013
    • Slow proton exchange and multiple folding species
      - Mar 26, 2013
  • You have access
    Mushroom phenological changes: A role for resource availability?
    Alan C. Gange, Aqilah B. Mohammad, Athanasios Damialis, and Edward G. Gange
    PNAS January 29, 2013 110 (5) E333-E334; https://doi.org/10.1073/pnas.1219640110
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    Reply to Gange et al.: Climate-driven changes in the fungal fruiting season in the United Kingdom
    Håvard Kauserud, Einar Heegaard, Ulf Büntgen, Rune Halvorsen, Simon Egli, Beatrice Senn-Irlet, Irmgard Krisai-Greilhuber, Wolfgang Dämon, Jenni Nordén, Klaus Høiland, Paul M. Kirk, Mikhail Semenov, Nils Chr. Stenseth, and Lynne Boddy
    PNAS January 29, 2013 110 (5) E335; https://doi.org/10.1073/pnas.1221131110

    See companion article:

    • Exploring one-state downhill protein folding in single molecules
      - Dec 19, 2011
    • Climate warming and mushroom fruiting phenology
      - Aug 20, 2012
  • You have access
    Clever crows or unbalanced birds?
    Simon Dymond, Mark Haselgrove, and Anthony McGregor
    PNAS January 29, 2013 110 (5) E336; https://doi.org/10.1073/pnas.1218931110
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    Reply to Dymond et al.: Clear evidence of habituation counters counterbalancing
    Alex H. Taylor, Rachael Miller, and Russell D. Gray
    PNAS January 29, 2013 110 (5) E337; https://doi.org/10.1073/pnas.1219586110

    See companion article:

    • Causal reasoning in New Caledonian crows
      - Sep 17, 2012

Commentaries

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    A NONO-gate times the cell cycle
    Bert Maier and Achim Kramer
    PNAS January 29, 2013 110 (5) 1565-1566; https://doi.org/10.1073/pnas.1221057110

    See companion article:

    • NONO couples the circadian clock to the cell cycle
      - Dec 24, 2012
  • You have access
    Coral calcification feels the acid
    Alexander C. Gagnon
    PNAS January 29, 2013 110 (5) 1567-1568; https://doi.org/10.1073/pnas.1221308110

    See companion article:

    • Impact of acidification on coral internal pH
      - Dec 31, 2012
  • You have access
    History of environmental contamination by oil sands extraction
    Peter V. Hodson
    PNAS January 29, 2013 110 (5) 1569-1570; https://doi.org/10.1073/pnas.1221660110

    See companion article:

    • Oil sands PAH legacy
      - Jan 07, 2013
  • You have access
    miR-122 is more than a shield for the hepatitis C virus genome
    Adolfo García-Sastre and Matthew J. Evans
    PNAS January 29, 2013 110 (5) 1571-1572; https://doi.org/10.1073/pnas.1220841110

    See companion article:

    • Xrn1 vs. miR-122 in HCV replication
      - Dec 17, 2012

PNAS Plus Significance Statements

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    PNAS Plus Significance Statements
    PNAS January 29, 2013 110 (5) 1573; https://doi.org/10.1073/pnas.ss11005

    See companion article:

    • Stimulon of Pseudomonas syringae in and on plants
      - Jan 14, 2013
    • Gene activity profiles of Arabidopsis seed regions
      - Jan 14, 2013
    • Phactr4 is a tumor suppressor
      - Jan 14, 2013
    • AKIP1 in cardiac injury
      - Jan 14, 2013

Feature Article

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    NONO couples the circadian clock to the cell cycle
    • From the Cover
    Elzbieta Kowalska, Juergen A. Ripperger, Dominik C. Hoegger, Pascal Bruegger, Thorsten Buch, Thomas Birchler, Anke Mueller, Urs Albrecht, Claudio Contaldo, and Steven A. Brown
    PNAS January 29, 2013 110 (5) 1592-1599; https://doi.org/10.1073/pnas.1213317110

    See companion article:

    • A NONO-gate times the cell cycle
      - Jan 16, 2013

Physical Sciences

  • Applied Physical Sciences

    • Open Access
      Calling patterns in human communication dynamics
      Zhi-Qiang Jiang, Wen-Jie Xie, Ming-Xia Li, Boris Podobnik, Wei-Xing Zhou, and H. Eugene Stanley
      PNAS January 29, 2013 110 (5) 1600-1605; https://doi.org/10.1073/pnas.1220433110
  • Chemistry

    • You have access
      High-pressure NMR reveals close similarity between cold and alcohol protein denaturation in ubiquitin
      Navratna Vajpai, Lydia Nisius, Maciej Wiktor, and Stephan Grzesiek
      PNAS January 29, 2013 110 (5) E368-E376; https://doi.org/10.1073/pnas.1212222110
    • You have access
      Snapshots of a protein folding intermediate
      Seiji Yamada, Nicole D. Bouley Ford, Gretchen E. Keller, William C. Ford, Harry B. Gray, and Jay R. Winkler
      PNAS January 29, 2013 110 (5) 1606-1610; https://doi.org/10.1073/pnas.1221832110
    • You have access
      Ambient mass spectrometry for the intraoperative molecular diagnosis of human brain tumors
      Livia S. Eberlin, Isaiah Norton, Daniel Orringer, Ian F. Dunn, Xiaohui Liu, Jennifer L. Ide, Alan K. Jarmusch, Keith L. Ligon, Ferenc A. Jolesz, Alexandra J. Golby, Sandro Santagata, Nathalie Y. R. Agar, and R. Graham Cooks
      PNAS January 29, 2013 110 (5) 1611-1616; https://doi.org/10.1073/pnas.1215687110

      See companion article:

      • In This Issue
        - Jan 29, 2013
    • You have access
      Long-range protein–water dynamics in hyperactive insect antifreeze proteins
      Konrad Meister, Simon Ebbinghaus, Yao Xu, John G. Duman, Arthur DeVries, Martin Gruebele, David M. Leitner, and Martina Havenith
      PNAS January 29, 2013 110 (5) 1617-1622; https://doi.org/10.1073/pnas.1214911110
    • You have access
      Explaining why Gleevec is a specific and potent inhibitor of Abl kinase
      Yen-Lin Lin, Yilin Meng, Wei Jiang, and Benoît Roux
      PNAS January 29, 2013 110 (5) 1664-1669; https://doi.org/10.1073/pnas.1214330110
  • Computer Sciences

    • Open Access
      Reference-assisted chromosome assembly
      Jaebum Kim, Denis M. Larkin, Qingle Cai, Asan, Yongfen Zhang, Ri-Li Ge, Loretta Auvil, Boris Capitanu, Guojie Zhang, Harris A. Lewin, and Jian Ma
      PNAS January 29, 2013 110 (5) 1785-1790; https://doi.org/10.1073/pnas.1220349110
  • Physics

    • You have access
      Propulsion of microorganisms by a helical flagellum
      Bruce Rodenborn, Chih-Hung Chen, Harry L. Swinney, Bin Liu, and H. P. Zhang
      PNAS January 29, 2013 110 (5) E338-E347; https://doi.org/10.1073/pnas.1219831110
    • You have access
      Quantum phase transition from triangular to stripe charge order in NbSe2
      Anjan Soumyanarayanan, Michael M. Yee, Yang He, Jasper van Wezel, Dirk J. Rahn, Kai Rossnagel, E. W. Hudson, Michael R. Norman, and Jennifer E. Hoffman
      PNAS January 29, 2013 110 (5) 1623-1627; https://doi.org/10.1073/pnas.1211387110

Social Sciences

  • Psychological and Cognitive Sciences

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      Using model-based functional MRI to locate working memory updates and declarative memory retrievals in the fronto-parietal network
      Jelmer P. Borst and John R. Anderson
      PNAS January 29, 2013 110 (5) 1628-1633; https://doi.org/10.1073/pnas.1221572110
    • Open Access
      Physical activity and obesity mediate the association between childhood motor function and adolescents’ academic achievement
      Marko T. Kantomaa, Emmanuel Stamatakis, Anna Kankaanpää, Marika Kaakinen, Alina Rodriguez, Anja Taanila, Timo Ahonen, Marjo-Riitta Järvelin, and Tuija Tammelin
      PNAS January 29, 2013 110 (5) 1917-1922; https://doi.org/10.1073/pnas.1214574110

      See companion article:

      • In This Issue
        - Jan 29, 2013
  • Social Sciences

    • Open Access
      Calling patterns in human communication dynamics
      Zhi-Qiang Jiang, Wen-Jie Xie, Ming-Xia Li, Boris Podobnik, Wei-Xing Zhou, and H. Eugene Stanley
      PNAS January 29, 2013 110 (5) 1600-1605; https://doi.org/10.1073/pnas.1220433110

Biological Sciences

  • Anthropology

    • Open Access
      The characteristics and chronology of the earliest Acheulean at Konso, Ethiopia
      • Inaugural Article
      Yonas Beyene, Shigehiro Katoh, Giday WoldeGabriel, William K. Hart, Kozo Uto, Masafumi Sudo, Megumi Kondo, Masayuki Hyodo, Paul R. Renne, Gen Suwa, and Berhane Asfaw
      PNAS January 29, 2013 110 (5) 1584-1591; https://doi.org/10.1073/pnas.1221285110
  • Applied Biological Sciences

    • You have access
      Impact of seawater acidification on pH at the tissue–skeleton interface and calcification in reef corals
      • From the Cover
      Alexander A. Venn, Eric Tambutté, Michael Holcomb, Julien Laurent, Denis Allemand, and Sylvie Tambutté
      PNAS January 29, 2013 110 (5) 1634-1639; https://doi.org/10.1073/pnas.1216153110

      See companion article:

      • Coral Calcification feels the acid
        - Jan 17, 2013
    • You have access
      Generation of functional eggs and sperm from cryopreserved whole testes
      Seungki Lee, Yoshiko Iwasaki, Shinya Shikina, and Goro Yoshizaki
      PNAS January 29, 2013 110 (5) 1640-1645; https://doi.org/10.1073/pnas.1218468110
  • Biochemistry

    • Open Access
      NTP-mediated nucleotide excision activity of hepatitis C virus RNA-dependent RNA polymerase
      Zhinan Jin, Vincent Leveque, Han Ma, Kenneth A. Johnson, and Klaus Klumpp
      PNAS January 29, 2013 110 (5) E348-E357; https://doi.org/10.1073/pnas.1214924110
    • You have access
      Two-gate mechanism for phospholipid selection and transport by type IV P-type ATPases
      Ryan D. Baldridge and Todd R. Graham
      PNAS January 29, 2013 110 (5) E358-E367; https://doi.org/10.1073/pnas.1216948110
    • You have access
      Transmembrane helix orientation influences membrane binding of the intracellular juxtamembrane domain in Neu receptor peptides
      Chihiro Matsushita, Hiroko Tamagaki, Yudai Miyazawa, Saburo Aimoto, Steven O. Smith, and Takeshi Sato
      PNAS January 29, 2013 110 (5) 1646-1651; https://doi.org/10.1073/pnas.1215207110
    • You have access
      Structural basis for cytosolic double-stranded RNA surveillance by human oligoadenylate synthetase 1
      Jesse Donovan, Matthew Dufner, and Alexei Korennykh
      PNAS January 29, 2013 110 (5) 1652-1657; https://doi.org/10.1073/pnas.1218528110
    • Open Access
      Role of poly(ADP-ribose) polymerase-1 in the removal of UV-induced DNA lesions by nucleotide excision repair
      Mihaela Robu, Rashmi G. Shah, Nancy Petitclerc, Julie Brind’Amour, Febitha Kandan-Kulangara, and Girish M. Shah
      PNAS January 29, 2013 110 (5) 1658-1663; https://doi.org/10.1073/pnas.1209507110
  • Biophysics and Computational Biology

    • You have access
      Propulsion of microorganisms by a helical flagellum
      Bruce Rodenborn, Chih-Hung Chen, Harry L. Swinney, Bin Liu, and H. P. Zhang
      PNAS January 29, 2013 110 (5) E338-E347; https://doi.org/10.1073/pnas.1219831110
    • You have access
      High-pressure NMR reveals close similarity between cold and alcohol protein denaturation in ubiquitin
      Navratna Vajpai, Lydia Nisius, Maciej Wiktor, and Stephan Grzesiek
      PNAS January 29, 2013 110 (5) E368-E376; https://doi.org/10.1073/pnas.1212222110
    • You have access
      Snapshots of a protein folding intermediate
      Seiji Yamada, Nicole D. Bouley Ford, Gretchen E. Keller, William C. Ford, Harry B. Gray, and Jay R. Winkler
      PNAS January 29, 2013 110 (5) 1606-1610; https://doi.org/10.1073/pnas.1221832110
    • You have access
      Explaining why Gleevec is a specific and potent inhibitor of Abl kinase
      Yen-Lin Lin, Yilin Meng, Wei Jiang, and Benoît Roux
      PNAS January 29, 2013 110 (5) 1664-1669; https://doi.org/10.1073/pnas.1214330110
    • You have access
      Properties of hydrophobic free energy found by gas–liquid transfer
      Robert L. Baldwin
      PNAS January 29, 2013 110 (5) 1670-1673; https://doi.org/10.1073/pnas.1220825110
    • You have access
      Caulobacter chromosome in vivo configuration matches model predictions for a supercoiled polymer in a cell-like confinement
      Sun-Hae Hong, Esteban Toro, Kim I. Mortensen, Mario A. Díaz de la Rosa, Sebastian Doniach, Lucy Shapiro, Andrew J. Spakowitz, and Harley H. McAdams
      PNAS January 29, 2013 110 (5) 1674-1679; https://doi.org/10.1073/pnas.1220824110
    • You have access
      Frustration in the energy landscapes of multidomain protein misfolding
      Weihua Zheng, Nicholas P. Schafer, and Peter G. Wolynes
      PNAS January 29, 2013 110 (5) 1680-1685; https://doi.org/10.1073/pnas.1222130110
    • Open Access
      Minimization of thermodynamic costs in cancer cell invasion
      Liyu Liu, Guillaume Duclos, Bo Sun, Jeongseog Lee, Amy Wu, Yoonseok Kam, Eduardo D. Sontag, Howard A. Stone, James C. Sturm, Robert A. Gatenby, and Robert H. Austin
      PNAS January 29, 2013 110 (5) 1686-1691; https://doi.org/10.1073/pnas.1221147110
    • You have access
      Buried lysine, but not arginine, titrates and alters transmembrane helix tilt
      Nicholas J. Gleason, Vitaly V. Vostrikov, Denise V. Greathouse, and Roger E. Koeppe II
      PNAS January 29, 2013 110 (5) 1692-1695; https://doi.org/10.1073/pnas.1215400110
    • You have access
      Crystal structure of glycoprotein C from Rift Valley fever virus
      Moshe Dessau and Yorgo Modis
      PNAS January 29, 2013 110 (5) 1696-1701; https://doi.org/10.1073/pnas.1217780110
    • You have access
      Single-particle EM reveals extensive conformational variability of the Ltn1 E3 ligase
      Dmitry Lyumkis, Selom K. Doamekpor, Mario H. Bengtson, Joong-Won Lee, Tasha B. Toro, Matthew D. Petroski, Christopher D. Lima, Clinton S. Potter, Bridget Carragher, and Claudio A. P. Joazeiro
      PNAS January 29, 2013 110 (5) 1702-1707; https://doi.org/10.1073/pnas.1210041110
  • Cell Biology

    • Open Access
      A kinase interacting protein (AKIP1) is a key regulator of cardiac stress
      Mira Sastri, Kristofer J. Haushalter, Mathivadhani Panneerselvam, Philip Chang, Heidi Fridolfsson, J. Cameron Finley, Daniel Ng, Jan M. Schilling, Atsushi Miyanohara, Michele E. Day, Hiro Hakozaki, Susanna Petrosyan, Antonius Koller, Charles C. King, Manjula Darshi, Donald K. Blumenthal, Sameh Saad Ali, David M. Roth, Hemal H. Patel, and Susan S. Taylor
      PNAS January 29, 2013 110 (5) E387-E396; https://doi.org/10.1073/pnas.1221670110

      See companion article:

      • PNAS Plus Significance Statements
        - Jan 29, 2013
    • You have access
      Activation of NF-κB signalling by fusicoccin-induced dimerization
      Malgorzata Skwarczynska, Manuela Molzan, and Christian Ottmann
      PNAS January 29, 2013 110 (5) E377-E386; https://doi.org/10.1073/pnas.1212990110
    • You have access
      NONO couples the circadian clock to the cell cycle
      • From the Cover
      Elzbieta Kowalska, Juergen A. Ripperger, Dominik C. Hoegger, Pascal Bruegger, Thorsten Buch, Thomas Birchler, Anke Mueller, Urs Albrecht, Claudio Contaldo, and Steven A. Brown
      PNAS January 29, 2013 110 (5) 1592-1599; https://doi.org/10.1073/pnas.1213317110

      See companion article:

      • A NONO-gate times the cell cycle
        - Jan 16, 2013
    • You have access
      H1 linker histone promotes epigenetic silencing by regulating both DNA methylation and histone H3 methylation
      Seung-Min Yang, Byung Ju Kim, Laura Norwood Toro, and Arthur I. Skoultchi
      PNAS January 29, 2013 110 (5) 1708-1713; https://doi.org/10.1073/pnas.1213266110
    • You have access
      High throughput kinase inhibitor screens reveal TRB3 and MAPK-ERK/TGFβ pathways as fundamental Notch regulators in breast cancer
      Julia Izrailit, Hal K. Berman, Alessandro Datti, Jeffrey L. Wrana, and Michael Reedijk
      PNAS January 29, 2013 110 (5) 1714-1719; https://doi.org/10.1073/pnas.1214014110
    • You have access
      RNF2/Ring1b negatively regulates p53 expression in selective cancer cell types to promote tumor development
      Wen-jing Su, Jun-shun Fang, Feng Cheng, Chao Liu, Fang Zhou, and Jian Zhang
      PNAS January 29, 2013 110 (5) 1720-1725; https://doi.org/10.1073/pnas.1211604110
    • You have access
      Critical roles of type III phosphatidylinositol phosphate kinase in murine embryonic visceral endoderm and adult intestine
      Shunsuke Takasuga, Yasuo Horie, Junko Sasaki, Ge-Hong Sun-Wada, Nobuyuki Kawamura, Ryota Iizuka, Katsunori Mizuno, Satoshi Eguchi, Satoshi Kofuji, Hirotaka Kimura, Masakazu Yamazaki, Chihoko Horie, Eri Odanaga, Yoshiko Sato, Shinsuke Chida, Kenji Kontani, Akihiro Harada, Toshiaki Katada, Akira Suzuki, Yoh Wada, Hirohide Ohnishi, and Takehiko Sasaki
      PNAS January 29, 2013 110 (5) 1726-1731; https://doi.org/10.1073/pnas.1213212110
  • Developmental Biology

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      Reprogramming of adult rod photoreceptors prevents retinal degeneration
      Cynthia L. Montana, Alexander V. Kolesnikov, Susan Q. Shen, Connie A. Myers, Vladimir J. Kefalov, and Joseph C. Corbo
      PNAS January 29, 2013 110 (5) 1732-1737; https://doi.org/10.1073/pnas.1214387110
    • You have access
      Brg1 governs distinct pathways to direct multiple aspects of mammalian neural crest cell development
      Wei Li, Yiqin Xiong, Ching Shang, Karen Y. Twu, Calvin T. Hang, Jin Yang, Pei Han, Chieh-Yu Lin, Chien-Jung Lin, Feng-Chiao Tsai, Kryn Stankunas, Tobias Meyer, Daniel Bernstein, Minggui Pan, and Ching-Pin Chang
      PNAS January 29, 2013 110 (5) 1738-1743; https://doi.org/10.1073/pnas.1218072110
  • Ecology

    • Open Access
      Plant invasions and extinction debts
      Benjamin Gilbert and Jonathan M. Levine
      PNAS January 29, 2013 110 (5) 1744-1749; https://doi.org/10.1073/pnas.1212375110
    • You have access
      Centennial-scale fluctuations and regional complexity characterize Pacific salmon population dynamics over the past five centuries
      Lauren A. Rogers, Daniel E. Schindler, Peter J. Lisi, Gordon W. Holtgrieve, Peter R. Leavitt, Lynda Bunting, Bruce P. Finney, Daniel T. Selbie, Guangjie Chen, Irene Gregory-Eaves, Mark J. Lisac, and Patrick B. Walsh
      PNAS January 29, 2013 110 (5) 1750-1755; https://doi.org/10.1073/pnas.1212858110
  • Environmental Sciences

    • Open Access
      Biogeochemistry of beetle-killed forests: Explaining a weak nitrate response
      Charles C. Rhoades, James H. McCutchan Jr., Leigh A. Cooper, David Clow, Thomas M. Detmer, Jennifer S. Briggs, John D. Stednick, Thomas T. Veblen, Rachel M. Ertz, Gene E. Likens, and William M. Lewis Jr.
      PNAS January 29, 2013 110 (5) 1756-1760; https://doi.org/10.1073/pnas.1221029110
    • Open Access
      Legacy of a half century of Athabasca oil sands development recorded by lake ecosystems
      • From the Cover
      Joshua Kurek, Jane L. Kirk, Derek C. G. Muir, Xiaowa Wang, Marlene S. Evans, and John P. Smol
      PNAS January 29, 2013 110 (5) 1761-1766; https://doi.org/10.1073/pnas.1217675110

      See companion article:

      • History of oil sands contamination
        - Jan 11, 2013
      • In This Issue
        - Jan 29, 2013

      See companion article:

      • Kurek et al. reply to Hrudey
        - May 29, 2013
    • You have access
      SLC4 family transporters in a marine diatom directly pump bicarbonate from seawater
      Kensuke Nakajima, Atsuko Tanaka, and Yusuke Matsuda
      PNAS January 29, 2013 110 (5) 1767-1772; https://doi.org/10.1073/pnas.1216234110
    • Open Access
      Filling the Eastern European gap in millennium-long temperature reconstructions
      Ulf Büntgen, Tomáš Kyncl, Christian Ginzler, David S. Jacks, Jan Esper, Willy Tegel, Karl-Uwe Heussner, and Josef Kyncl
      PNAS January 29, 2013 110 (5) 1773-1778; https://doi.org/10.1073/pnas.1211485110
    • You have access
      Frequency and intensity of productivity regime shifts in marine fish stocks
      Katyana A. Vert-pre, Ricardo O. Amoroso, Olaf P. Jensen, and Ray Hilborn
      PNAS January 29, 2013 110 (5) 1779-1784; https://doi.org/10.1073/pnas.1214879110

      See companion article:

      • Robust policies needed
        - Mar 27, 2013
  • Evolution

    • Open Access
      Reference-assisted chromosome assembly
      Jaebum Kim, Denis M. Larkin, Qingle Cai, Asan, Yongfen Zhang, Ri-Li Ge, Loretta Auvil, Boris Capitanu, Guojie Zhang, Harris A. Lewin, and Jian Ma
      PNAS January 29, 2013 110 (5) 1785-1790; https://doi.org/10.1073/pnas.1220349110
    • Open Access
      Evolution of multicellularity coincided with increased diversification of cyanobacteria and the Great Oxidation Event
      Bettina E. Schirrmeister, Jurriaan M. de Vos, Alexandre Antonelli, and Homayoun C. Bagheri
      PNAS January 29, 2013 110 (5) 1791-1796; https://doi.org/10.1073/pnas.1209927110
    • You have access
      Gene body methylation is conserved between plant orthologs and is of evolutionary consequence
      Shohei Takuno and Brandon S. Gaut
      PNAS January 29, 2013 110 (5) 1797-1802; https://doi.org/10.1073/pnas.1215380110
  • Genetics

    • You have access
      STOP gene Phactr4 is a tumor suppressor
      Nicole L. Solimini, Anthony C. Liang, Chunxiao Xu, Natalya N. Pavlova, Qikai Xu, Teresa Davoli, Mamie Z. Li, Kwok-Kin Wong, and Stephen J. Elledge
      PNAS January 29, 2013 110 (5) E407-E414; https://doi.org/10.1073/pnas.1221385110

      See companion article:

      • PNAS Plus Significance Statements
        - Jan 29, 2013
    • You have access
      Coiled-coil protein Scy is a key component of a multiprotein assembly controlling polarized growth in Streptomyces
      Neil A. Holmes, John Walshaw, Richard M. Leggett, Annabelle Thibessard, Kate A. Dalton, Michael D. Gillespie, Andrew M. Hemmings, Bertolt Gust, and Gabriella H. Kelemen
      PNAS January 29, 2013 110 (5) E397-E406; https://doi.org/10.1073/pnas.1210657110
    • You have access
      Genome-wide data substantiate Holocene gene flow from India to Australia
      Irina Pugach, Frederick Delfin, Ellen Gunnarsdóttir, Manfred Kayser, and Mark Stoneking
      PNAS January 29, 2013 110 (5) 1803-1808; https://doi.org/10.1073/pnas.1211927110

      See companion article:

      • Indian genes and Australian archaeological record
        - Jun 10, 2013
  • Immunology

    • You have access
      Role of the inflammasome in defense against venoms
      • From the Cover
      Noah W. Palm and Ruslan Medzhitov
      PNAS January 29, 2013 110 (5) 1809-1814; https://doi.org/10.1073/pnas.1221476110

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      • In This Issue
        - Jan 29, 2013
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      Inhibition of triple-negative breast cancer models by combinations of antibodies to EGFR
      Daniela A. Ferraro, Nadège Gaborit, Ruth Maron, Hadas Cohen-Dvashi, Ziv Porat, Fresia Pareja, Sara Lavi, Moshit Lindzen, Nir Ben-Chetrit, Michael Sela, and Yosef Yarden
      PNAS January 29, 2013 110 (5) 1815-1820; https://doi.org/10.1073/pnas.1220763110
    • You have access
      Analysis of naïve lung CD4 T cells provides evidence of functional lung to lymph node migration
      Stephane M. Caucheteux, Parizad Torabi-Parizi, and William E. Paul
      PNAS January 29, 2013 110 (5) 1821-1826; https://doi.org/10.1073/pnas.1221306110
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      Recognition of microbial and mammalian phospholipid antigens by NKT cells with diverse TCRs
      Raju V. V. Tatituri, Gerald F. M. Watts, Veemal Bhowruth, Nathaniel Barton, Alissa Rothchild, Fong-Fu Hsu, Catarina F. Almeida, Liam R. Cox, Lothar Eggeling, Susanna Cardell, Jamie Rossjohn, Dale I. Godfrey, Samuel M. Behar, Gurdyal S. Besra, Michael B. Brenner, and Manfred Brigl
      PNAS January 29, 2013 110 (5) 1827-1832; https://doi.org/10.1073/pnas.1220601110
    • You have access
      Aire’s plant homeodomain(PHD)-2 is critical for induction of immunological tolerance
      Siyoung Yang, Kushagra Bansal, Jared Lopes, Christophe Benoist, and Diane Mathis
      PNAS January 29, 2013 110 (5) 1833-1838; https://doi.org/10.1073/pnas.1222023110
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      Ecological analysis of antigen-specific CTL repertoires defines the relationship between naïve and immune T-cell populations
      Paul G. Thomas, Andreas Handel, Peter C. Doherty, and Nicole L. La Gruta
      PNAS January 29, 2013 110 (5) 1839-1844; https://doi.org/10.1073/pnas.1222149110
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      Splicing factor SF2/ASF rescues IL-2 production in T cells from systemic lupus erythematosus patients by activating IL-2 transcription
      Vaishali R. Moulton, Alexandros P. Grammatikos, Lisa M. Fitzgerald, and George C. Tsokos
      PNAS January 29, 2013 110 (5) 1845-1850; https://doi.org/10.1073/pnas.1214207110
    • Open Access
      Caspase-11 stimulates rapid flagellin-independent pyroptosis in response to Legionella pneumophila
      Christopher L. Case, Lara J. Kohler, Jonilson B. Lima, Till Strowig, Marcel R. de Zoete, Richard A. Flavell, Dario S. Zamboni, and Craig R. Roy
      PNAS January 29, 2013 110 (5) 1851-1856; https://doi.org/10.1073/pnas.1211521110
  • Medical Sciences

    • You have access
      Changes in the local tumor microenvironment in recurrent cancers may explain the failure of vaccines after surgery
      Jarrod Predina, Evgeniy Eruslanov, Brendan Judy, Veena Kapoor, Guanjun Cheng, Liang-Chuan Wang, Jing Sun, Edmund K. Moon, Zvi Gregorio Fridlender, Steven Albelda, and Sunil Singhal
      PNAS January 29, 2013 110 (5) E415-E424; https://doi.org/10.1073/pnas.1211850110
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      Ambient mass spectrometry for the intraoperative molecular diagnosis of human brain tumors
      Livia S. Eberlin, Isaiah Norton, Daniel Orringer, Ian F. Dunn, Xiaohui Liu, Jennifer L. Ide, Alan K. Jarmusch, Keith L. Ligon, Ferenc A. Jolesz, Alexandra J. Golby, Sandro Santagata, Nathalie Y. R. Agar, and R. Graham Cooks
      PNAS January 29, 2013 110 (5) 1611-1616; https://doi.org/10.1073/pnas.1215687110

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      • In This Issue
        - Jan 29, 2013
    • Open Access
      Long-term in vivo monitoring of mouse and human hematopoietic stem cell engraftment with a human positron emission tomography reporter gene
      Melissa N. McCracken, Eric H. Gschweng, Evan Nair-Gill, Jami McLaughlin, Aaron R. Cooper, Mireille Riedinger, Donghui Cheng, Christopher Nosala, Donald B. Kohn, and Owen N. Witte
      PNAS January 29, 2013 110 (5) 1857-1862; https://doi.org/10.1073/pnas.1221840110
    • Open Access
      Antitumor activity of a pyrrole-imidazole polyamide
      Fei Yang, Nicholas G. Nickols, Benjamin C. Li, Georgi K. Marinov, Jonathan W. Said, and Peter B. Dervan
      PNAS January 29, 2013 110 (5) 1863-1868; https://doi.org/10.1073/pnas.1222035110
    • Open Access
      CGI-58 knockdown sequesters diacylglycerols in lipid droplets/ER-preventing diacylglycerol-mediated hepatic insulin resistance
      Jennifer L. Cantley, Toru Yoshimura, Joao Paulo G. Camporez, Dongyan Zhang, Francois R. Jornayvaz, Naoki Kumashiro, Fitsum Guebre-Egziabher, Michael J. Jurczak, Mario Kahn, Blas A. Guigni, Julie Serr, Joseph Hankin, Robert C. Murphy, Gary W. Cline, Sanjay Bhanot, Vara Prasad Manchem, J. Mark Brown, Varman T. Samuel, and Gerald I. Shulman
      PNAS January 29, 2013 110 (5) 1869-1874; https://doi.org/10.1073/pnas.1219456110
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      Notch signaling in chondrocytes modulates endochondral ossification and osteoarthritis development
      Yoko Hosaka, Taku Saito, Shurei Sugita, Tomohiro Hikata, Hiroshi Kobayashi, Atsushi Fukai, Yuki Taniguchi, Makoto Hirata, Haruhiko Akiyama, Ung-il Chung, and Hiroshi Kawaguchi
      PNAS January 29, 2013 110 (5) 1875-1880; https://doi.org/10.1073/pnas.1207458110
  • Microbiology

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      Competing and noncompeting activities of miR-122 and the 5′ exonuclease Xrn1 in regulation of hepatitis C virus replication
      • From the Cover
      You Li, Takahiro Masaki, Daisuke Yamane, David R. McGivern, and Stanley M. Lemon
      PNAS January 29, 2013 110 (5) 1881-1886; https://doi.org/10.1073/pnas.1213515110

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      • Hepatitis C virus and miR-122
        - Jan 16, 2013
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      Acidocalcisomes of Trypanosoma brucei have an inositol 1,4,5-trisphosphate receptor that is required for growth and infectivity
      Guozhong Huang, Paula J. Bartlett, Andrew P. Thomas, Silvia N. J. Moreno, and Roberto Docampo
      PNAS January 29, 2013 110 (5) 1887-1892; https://doi.org/10.1073/pnas.1216955110
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      Antibodies are necessary for rVSV/ZEBOV-GP–mediated protection against lethal Ebola virus challenge in nonhuman primates
      Andrea Marzi, Flora Engelmann, Friederike Feldmann, Kristen Haberthur, W. Lesley Shupert, Douglas Brining, Dana P. Scott, Thomas W. Geisbert, Yoshihiro Kawaoka, Michael G. Katze, Heinz Feldmann, and Ilhem Messaoudi
      PNAS January 29, 2013 110 (5) 1893-1898; https://doi.org/10.1073/pnas.1209591110
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      Borna disease virus-induced neuronal degeneration dependent on host genetic background and prevented by soluble factors
      Yuan-Ju Wu, Herbert Schulz, Chia-Ching Lin, Kathrin Saar, Giannino Patone, Heike Fischer, Norbert Hübner, Bernd Heimrich, and Martin Schwemmle
      PNAS January 29, 2013 110 (5) 1899-1904; https://doi.org/10.1073/pnas.1214939110
    • Open Access
      Structure of the trypanosome haptoglobin–hemoglobin receptor and implications for nutrient uptake and innate immunity
      Matthew K. Higgins, Olga Tkachenko, Alan Brown, Jenny Reed, Jayne Raper, and Mark Carrington
      PNAS January 29, 2013 110 (5) 1905-1910; https://doi.org/10.1073/pnas.1214943110
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      An immunoreceptor tyrosine-based inhibition motif in varicella-zoster virus glycoprotein B regulates cell fusion and skin pathogenesis
      Stefan L. Oliver, Jennifer J. Brady, Marvin H. Sommer, Mike Reichelt, Phillip Sung, Helen M. Blau, and Ann M. Arvin
      PNAS January 29, 2013 110 (5) 1911-1916; https://doi.org/10.1073/pnas.1216985110
  • Neuroscience

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      Using model-based functional MRI to locate working memory updates and declarative memory retrievals in the fronto-parietal network
      Jelmer P. Borst and John R. Anderson
      PNAS January 29, 2013 110 (5) 1628-1633; https://doi.org/10.1073/pnas.1221572110
    • Open Access
      Physical activity and obesity mediate the association between childhood motor function and adolescents’ academic achievement
      Marko T. Kantomaa, Emmanuel Stamatakis, Anna Kankaanpää, Marika Kaakinen, Alina Rodriguez, Anja Taanila, Timo Ahonen, Marjo-Riitta Järvelin, and Tuija Tammelin
      PNAS January 29, 2013 110 (5) 1917-1922; https://doi.org/10.1073/pnas.1214574110

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      • In This Issue
        - Jan 29, 2013
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      ∆FosB differentially modulates nucleus accumbens direct and indirect pathway function
      Brad A. Grueter, Alfred J. Robison, Rachael L. Neve, Eric J. Nestler, and Robert C. Malenka
      PNAS January 29, 2013 110 (5) 1923-1928; https://doi.org/10.1073/pnas.1221742110
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      Coupling of functional connectivity and regional cerebral blood flow reveals a physiological basis for network hubs of the human brain
      Xia Liang, Qihong Zou, Yong He, and Yihong Yang
      PNAS January 29, 2013 110 (5) 1929-1934; https://doi.org/10.1073/pnas.1214900110
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      Nerve growth factor scales endocannabinoid signaling by regulating monoacylglycerol lipase turnover in developing cholinergic neurons
      Erik Keimpema, Giuseppe Tortoriello, Alán Alpár, Simona Capsoni, Ivan Arisi, Daniela Calvigioni, Sherry Shu-Jung Hu, Antonino Cattaneo, Patrick Doherty, Kenneth Mackie, and Tibor Harkany
      PNAS January 29, 2013 110 (5) 1935-1940; https://doi.org/10.1073/pnas.1212563110
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      Toll-like receptor 4 stimulation with the detoxified ligand monophosphoryl lipid A improves Alzheimer’s disease-related pathology
      Jean-Philippe Michaud, Maxime Hallé, Antoine Lampron, Peter Thériault, Paul Préfontaine, Mohammed Filali, Pascale Tribout-Jover, Anne-Marie Lanteigne, Rachel Jodoin, Christopher Cluff, Vincent Brichard, Rémi Palmantier, Anthony Pilorget, Daniel Larocque, and Serge Rivest
      PNAS January 29, 2013 110 (5) 1941-1946; https://doi.org/10.1073/pnas.1215165110
  • Plant Biology

    • You have access
      Transcriptional responses of Pseudomonas syringae to growth in epiphytic versus apoplastic leaf sites
      Xilan Yu, Steven P. Lund, Russell A. Scott, Jessica W. Greenwald, Angela H. Records, Dan Nettleton, Steven E. Lindow, Dennis C. Gross, and Gwyn A. Beattie
      PNAS January 29, 2013 110 (5) E425-E434; https://doi.org/10.1073/pnas.1221892110

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      • PNAS Plus Significance Statements
        - Jan 29, 2013
    • Open Access
      Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed
      Mark F. Belmonte, Ryan C. Kirkbride, Sandra L. Stone, Julie M. Pelletier, Anhthu Q. Bui, Edward C. Yeung, Meryl Hashimoto, Jiong Fei, Corey M. Harada, Matthew D. Munoz, Brandon H. Le, Gary N. Drews, Siobhan M. Brady, Robert B. Goldberg, and John J. Harada
      PNAS January 29, 2013 110 (5) E435-E444; https://doi.org/10.1073/pnas.1222061110

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      • PNAS Plus Significance Statements
        - Jan 29, 2013
    • You have access
      CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice
      Hiroshi Magome, Takahito Nomura, Atsushi Hanada, Noriko Takeda-Kamiya, Toshiyuki Ohnishi, Yuko Shinma, Takumi Katsumata, Hiroshi Kawaide, Yuji Kamiya, and Shinjiro Yamaguchi
      PNAS January 29, 2013 110 (5) 1947-1952; https://doi.org/10.1073/pnas.1215788110
    • Open Access
      Control of transposon activity by a histone H3K4 demethylase in rice
      Xiekui Cui, Ping Jin, Xia Cui, Lianfeng Gu, Zhike Lu, Yongming Xue, Liya Wei, Jianfei Qi, Xianwei Song, Ming Luo, Gynheung An, and Xiaofeng Cao
      PNAS January 29, 2013 110 (5) 1953-1958; https://doi.org/10.1073/pnas.1217020110
  • Psychological and Cognitive Sciences

    • You have access
      Monkeys are perceptually tuned to facial expressions that exhibit a theta-like speech rhythm
      Asif A. Ghazanfar, Ryan J. Morrill, and Christoph Kayser
      PNAS January 29, 2013 110 (5) 1959-1963; https://doi.org/10.1073/pnas.1214956110
  • Systems Biology

    • Open Access
      Incoherent feed-forward regulatory logic underpinning glucocorticoid receptor action
      Sheng-hong Chen, Kiriko Masuno, Samantha B. Cooper, and Keith R. Yamamoto
      PNAS January 29, 2013 110 (5) 1964-1969; https://doi.org/10.1073/pnas.1216108110

Corrections

  • You have access
    Correction for Bernard, The science in social science
    PNAS January 29, 2013 110 (5) 1970; https://doi.org/10.1073/pnas.1221822110
  • You have access
    Correction for Omsland et al., Developmental stage-specific metabolic and transcriptional activity of Chlamydia trachomatis in an axenic medium
    PNAS January 29, 2013 110 (5) 1970; https://doi.org/10.1073/pnas.1222800110
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Proceedings of the National Academy of Sciences: 110 (5)
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