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Table of Contents

April 29, 2014; vol. 111 no. 17

This Week in PNAS

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    In This Issue
    PNAS April 29, 2014 111 (17) 6117-6118; https://doi.org/10.1073/iti1714111

Letters (Online Only)

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    Evolution of social monogamy in primates is not consistently associated with male infanticide
    Dieter Lukas and Tim Clutton-Brock
    PNAS April 29, 2014 111 (17) E1674; first published March 26, 2014. https://doi.org/10.1073/pnas.1401012111
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    Reply to Lukas and Clutton-Brock: Infanticide still drives primate monogamy
    Christopher Opie, Quentin D. Atkinson, Robin I. M. Dunbar, and Susanne Shultz
    PNAS April 29, 2014 111 (17) E1675; first published March 26, 2014. https://doi.org/10.1073/pnas.1403165111

    See companion article:

    • Infanticide leads to monogamy in primates
      - Jul 29, 2013
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    Rates of upslope shifts for tropical species depend on life history and dispersal mode
    Evan M. Rehm
    PNAS April 29, 2014 111 (17) E1676; first published March 21, 2014. https://doi.org/10.1073/pnas.1403417111
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    Reply to Rehm: Why rates of upslope shifts in tropical species vary is an open question
    Benjamin G. Freeman and Alexandra M. Class Freeman
    PNAS April 29, 2014 111 (17) E1677; first published March 21, 2014. https://doi.org/10.1073/pnas.1403753111

    See companion article:

    • Rapid upslope shifts in tropical montane species
      - Feb 18, 2014

Opinion

Leading scientists discuss current issues.
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    The forgotten half of scientific thinking
    • Front Matter
    Marten Scheffer
    PNAS April 29, 2014 111 (17) 6119; https://doi.org/10.1073/pnas.1404649111

Commentaries

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    Induction of multiciliated cells from induced pluripotent stem cells
    Brigitte N. Gomperts
    PNAS April 29, 2014 111 (17) 6120-6121; first published April 16, 2014. https://doi.org/10.1073/pnas.1404414111

    See companion article:

    • Ciliated epithelial cells from iPSCs
      - Mar 24, 2014
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    Practical bound for dimensionality in high-dimensional entanglement
    Jacquiline Romero and Miles Padgett
    PNAS April 29, 2014 111 (17) 6122-6123; first published April 15, 2014. https://doi.org/10.1073/pnas.1404903111

    See companion article:

    • (100 × 100)-dimensional entangled quantum system
      - Mar 27, 2014
  • You have access
    Designed IgM from glycoengineering
    Andrew Hiatt
    PNAS April 29, 2014 111 (17) 6124-6125; first published April 15, 2014. https://doi.org/10.1073/pnas.1404904111

    See companion article:

    • Different IgM glycoforms from plants
      - Mar 31, 2014
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    Plant salt stress status is transmitted systemically via propagating calcium waves
    Aaron B. Stephan and Julian I. Schroeder
    PNAS April 29, 2014 111 (17) 6126-6127; first published April 15, 2014. https://doi.org/10.1073/pnas.1404895111

    See companion article:

    • Salt stress-induced Ca2+ waves
      - Mar 24, 2014

PNAS Plus Significance Statements

Brief statements written by the authors about the significance of their papers.
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    PNAS Plus Significance Statements
    PNAS April 29, 2014 111 (17) 6128-6130; https://doi.org/10.1073/pnas.ss11117

Perspective

  • Open Access
    Defining functional DNA elements in the human genome
    Manolis Kellis, Barbara Wold, Michael P. Snyder, Bradley E. Bernstein, Anshul Kundaje, Georgi K. Marinov, Lucas D. Ward, Ewan Birney, Gregory E. Crawford, Job Dekker, Ian Dunham, Laura L. Elnitski, Peggy J. Farnham, Elise A. Feingold, Mark Gerstein, Morgan C. Giddings, David M. Gilbert, Thomas R. Gingeras, Eric D. Green, Roderic Guigo, Tim Hubbard, Jim Kent, Jason D. Lieb, Richard M. Myers, Michael J. Pazin, Bing Ren, John A. Stamatoyannopoulos, Zhiping Weng, Kevin P. White, and Ross C. Hardison
    PNAS April 29, 2014 111 (17) 6131-6138; first published April 21, 2014. https://doi.org/10.1073/pnas.1318948111

    See companion article:

    • Both SE and CR elements can impact human disease
      - Aug 08, 2014

The Modern View Of Domestication Special Feature (Free Online)

  • Introduction

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      Current perspectives and the future of domestication studies
      • From the Cover
      Greger Larson, Dolores R. Piperno, Robin G. Allaby, Michael D. Purugganan, Leif Andersson, Manuel Arroyo-Kalin, Loukas Barton, Cynthia Climer Vigueira, Tim Denham, Keith Dobney, Andrew N. Doust, Paul Gepts, M. Thomas P. Gilbert, Kristen J. Gremillion, Leilani Lucas, Lewis Lukens, Fiona B. Marshall, Kenneth M. Olsen, J. Chris Pires, Peter J. Richerson, Rafael Rubio de Casas, Oris I. Sanjur, Mark G. Thomas, and Dorian Q. Fuller
      PNAS April 29, 2014 111 (17) 6139-6146; first published April 22, 2014. https://doi.org/10.1073/pnas.1323964111
  • Perspectives

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      Evaluating the roles of directed breeding and gene flow in animal domestication
      Fiona B. Marshall, Keith Dobney, Tim Denham, and José M. Capriles
      PNAS April 29, 2014 111 (17) 6153-6158; first published April 21, 2014. https://doi.org/10.1073/pnas.1312984110
    • You have access
      Particularism and the retreat from theory in the archaeology of agricultural origins
      Kristen J. Gremillion, Loukas Barton, and Dolores R. Piperno
      PNAS April 29, 2014 111 (17) 6171-6177; first published April 21, 2014. https://doi.org/10.1073/pnas.1308938110

      See companion article:

      • Models, hypotheses, and theoretical frameworks
        - Jun 16, 2014
      • Maintaining a diverse toolkit
        - Jun 19, 2014
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      Archaeological and genetic insights into the origins of domesticated rice
      Briana L. Gross and Zhijun Zhao
      PNAS April 29, 2014 111 (17) 6190-6197; first published April 21, 2014. https://doi.org/10.1073/pnas.1308942110
  • Research Articles

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      Convergent evolution and parallelism in plant domestication revealed by an expanding archaeological record
      Dorian Q Fuller, Tim Denham, Manuel Arroyo-Kalin, Leilani Lucas, Chris J. Stevens, Ling Qin, Robin G. Allaby, and Michael D. Purugganan
      PNAS April 29, 2014 111 (17) 6147-6152; first published April 21, 2014. https://doi.org/10.1073/pnas.1308937110
    • You have access
      Storytelling and story testing in domestication
      Pascale Gerbault, Robin G. Allaby, Nicole Boivin, Anna Rudzinski, Ilaria M. Grimaldi, J. Chris Pires, Cynthia Climer Vigueira, Keith Dobney, Kristen J. Gremillion, Loukas Barton, Manuel Arroyo-Kalin, Michael D. Purugganan, Rafael Rubio de Casas, Ruth Bollongino, Joachim Burger, Dorian Q. Fuller, Daniel G. Bradley, David J. Balding, Peter J. Richerson, M. Thomas P. Gilbert, Greger Larson, and Mark G. Thomas
      PNAS April 29, 2014 111 (17) 6159-6164; first published April 21, 2014. https://doi.org/10.1073/pnas.1400425111
    • You have access
      Multiple lines of evidence for the origin of domesticated chili pepper, Capsicum annuum, in Mexico
      Kraig H. Kraft, Cecil H. Brown, Gary P. Nabhan, Eike Luedeling, José de Jesús Luna Ruiz, Geo Coppens d’Eeckenbrugge, Robert J. Hijmans, and Paul Gepts
      PNAS April 29, 2014 111 (17) 6165-6170; first published April 21, 2014. https://doi.org/10.1073/pnas.1308933111
    • You have access
      Beyond the single gene: How epistasis and gene-by-environment effects influence crop domestication
      Andrew N. Doust, Lewis Lukens, Kenneth M. Olsen, Margarita Mauro-Herrera, Ann Meyer, and Kimberly Rogers
      PNAS April 29, 2014 111 (17) 6178-6183; first published April 21, 2014. https://doi.org/10.1073/pnas.1308940110
    • You have access
      Establishing the validity of domestication genes using DNA from ancient chickens
      Linus Girdland Flink, Richard Allen, Ross Barnett, Helena Malmström, Joris Peters, Jonas Eriksson, Leif Andersson, Keith Dobney, and Greger Larson
      PNAS April 29, 2014 111 (17) 6184-6189; first published April 21, 2014. https://doi.org/10.1073/pnas.1308939110

Physical Sciences

  • Applied Physical Sciences

    • Open Access
      Strong interlayer coupling in van der Waals heterostructures built from single-layer chalcogenides
      Hui Fang, Corsin Battaglia, Carlo Carraro, Slavomir Nemsak, Burak Ozdol, Jeong Seuk Kang, Hans A. Bechtel, Sujay B. Desai, Florian Kronast, Ahmet A. Unal, Giuseppina Conti, Catherine Conlon, Gunnar K. Palsson, Michael C. Martin, Andrew M. Minor, Charles S. Fadley, Eli Yablonovitch, Roya Maboudian, and Ali Javey
      PNAS April 29, 2014 111 (17) 6198-6202; first published April 14, 2014. https://doi.org/10.1073/pnas.1405435111
  • Chemistry

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      [2Fe-2S] cluster transfer in iron–sulfur protein biogenesis
      Lucia Banci, Diego Brancaccio, Simone Ciofi-Baffoni, Rebecca Del Conte, Ravisekhar Gadepalli, Maciej Mikolajczyk, Sara Neri, Mario Piccioli, and Julia Winkelmann
      PNAS April 29, 2014 111 (17) 6203-6208; first published April 14, 2014. https://doi.org/10.1073/pnas.1400102111
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      Glioblastoma cellular architectures are predicted through the characterization of two-cell interactions
      Nataly Kravchenko-Balasha, Jun Wang, Francoise Remacle, R. D. Levine, and James R. Heath
      PNAS April 29, 2014 111 (17) 6521-6526; first published April 14, 2014. https://doi.org/10.1073/pnas.1404462111
  • Earth, Atmospheric, and Planetary Sciences

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      Rapidly reversible redox transformation in nanophase manganese oxides at room temperature triggered by changes in hydration
      Nancy Birkner and Alexandra Navrotsky
      PNAS April 29, 2014 111 (17) 6209-6214; first published April 14, 2014. https://doi.org/10.1073/pnas.1320014111
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      Younger Dryas deglaciation of Scotland driven by warming summers
      Gordon R. M. Bromley, Aaron E. Putnam, Kurt M. Rademaker, Thomas V. Lowell, Joerg M. Schaefer, Brenda Hall, Gisela Winckler, Sean D. Birkel, and Harold W. Borns
      PNAS April 29, 2014 111 (17) 6215-6219; first published April 14, 2014. https://doi.org/10.1073/pnas.1321122111
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      Fundamental differences between Arctic and Antarctic ozone depletion
      Susan Solomon, Jessica Haskins, Diane J. Ivy, and Flora Min
      PNAS April 29, 2014 111 (17) 6220-6225; first published April 14, 2014. https://doi.org/10.1073/pnas.1319307111
  • Engineering

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      Mapping the stochastic response of nanostructures
      Subrahmanyam Pattamatta, Ryan S. Elliott, and Ellad B. Tadmor
      PNAS April 29, 2014 111 (17) E1678-E1686; first published April 14, 2014. https://doi.org/10.1073/pnas.1402029111
    • Open Access
      Acoustically trapped colloidal crystals that are reconfigurable in real time
      Mihai Caleap and Bruce W. Drinkwater
      PNAS April 29, 2014 111 (17) 6226-6230; first published April 1, 2014. https://doi.org/10.1073/pnas.1323048111
    • You have access
      (Finite) statistical size effects on compressive strength
      Jérôme Weiss, Lucas Girard, Florent Gimbert, David Amitrano, and Damien Vandembroucq
      PNAS April 29, 2014 111 (17) 6231-6236; first published April 14, 2014. https://doi.org/10.1073/pnas.1403500111
  • Environmental Sciences

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      Toward a better understanding and quantification of methane emissions from shale gas development
      Dana R. Caulton, Paul B. Shepson, Renee L. Santoro, Jed P. Sparks, Robert W. Howarth, Anthony R. Ingraffea, Maria O. L. Cambaliza, Colm Sweeney, Anna Karion, Kenneth J. Davis, Brian H. Stirm, Stephen A. Montzka, and Ben R. Miller
      PNAS April 29, 2014 111 (17) 6237-6242; first published April 14, 2014. https://doi.org/10.1073/pnas.1316546111
  • Physics

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      Generation and confirmation of a (100 × 100)-dimensional entangled quantum system
      • From the Cover
      Mario Krenn, Marcus Huber, Robert Fickler, Radek Lapkiewicz, Sven Ramelow, and Anton Zeilinger
      PNAS April 29, 2014 111 (17) 6243-6247; first published March 27, 2014. https://doi.org/10.1073/pnas.1402365111

      See companion article:

      • Range of quantum entanglement
        - Apr 15, 2014

Social Sciences

  • Anthropology

    • You have access
      Convergent evolution and parallelism in plant domestication revealed by an expanding archaeological record
      Dorian Q Fuller, Tim Denham, Manuel Arroyo-Kalin, Leilani Lucas, Chris J. Stevens, Ling Qin, Robin G. Allaby, and Michael D. Purugganan
      PNAS April 29, 2014 111 (17) 6147-6152; first published April 21, 2014. https://doi.org/10.1073/pnas.1308937110
    • You have access
      Multiple lines of evidence for the origin of domesticated chili pepper, Capsicum annuum, in Mexico
      Kraig H. Kraft, Cecil H. Brown, Gary P. Nabhan, Eike Luedeling, José de Jesús Luna Ruiz, Geo Coppens d’Eeckenbrugge, Robert J. Hijmans, and Paul Gepts
      PNAS April 29, 2014 111 (17) 6165-6170; first published April 21, 2014. https://doi.org/10.1073/pnas.1308933111
  • Economic Sciences

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      Implementing the optimal provision of ecosystem services
      Stephen Polasky, David J. Lewis, Andrew J. Plantinga, and Erik Nelson
      PNAS April 29, 2014 111 (17) 6248-6253; first published April 10, 2014. https://doi.org/10.1073/pnas.1404484111
  • Psychological and Cognitive Sciences

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      Low glucose relates to greater aggression in married couples
      Brad J. Bushman, C. Nathan DeWall, Richard S. Pond Jr., and Michael D. Hanus
      PNAS April 29, 2014 111 (17) 6254-6257; first published April 14, 2014. https://doi.org/10.1073/pnas.1400619111
    • You have access
      Far transfer to language and math of a short software-based gaming intervention
      Andrea Paula Goldin, María Julia Hermida, Diego E. Shalom, Martín Elias Costa, Matías Lopez-Rosenfeld, María Soledad Segretin, Diego Fernández-Slezak, Sebastián J. Lipina, and Mariano Sigman
      PNAS April 29, 2014 111 (17) 6443-6448; first published April 7, 2014. https://doi.org/10.1073/pnas.1320217111

Biological Sciences

  • Agricultural Sciences

    • You have access
      Multiple lines of evidence for the origin of domesticated chili pepper, Capsicum annuum, in Mexico
      Kraig H. Kraft, Cecil H. Brown, Gary P. Nabhan, Eike Luedeling, José de Jesús Luna Ruiz, Geo Coppens d’Eeckenbrugge, Robert J. Hijmans, and Paul Gepts
      PNAS April 29, 2014 111 (17) 6165-6170; first published April 21, 2014. https://doi.org/10.1073/pnas.1308933111
    • Open Access
      Bayesian inference for an emerging arboreal epidemic in the presence of control
      Matthew Parry, Gavin J. Gibson, Stephen Parnell, Tim R. Gottwald, Michael S. Irey, Timothy C. Gast, and Christopher A. Gilligan
      PNAS April 29, 2014 111 (17) 6258-6262; first published April 7, 2014. https://doi.org/10.1073/pnas.1310997111
  • Anthropology

    • You have access
      Establishing the validity of domestication genes using DNA from ancient chickens
      Linus Girdland Flink, Richard Allen, Ross Barnett, Helena Malmström, Joris Peters, Jonas Eriksson, Leif Andersson, Keith Dobney, and Greger Larson
      PNAS April 29, 2014 111 (17) 6184-6189; first published April 21, 2014. https://doi.org/10.1073/pnas.1308939110
  • Applied Biological Sciences

    • Open Access
      Expression and glycoengineering of functionally active heteromultimeric IgM in plants
      • From the Cover
      Andreas Loos, Clemens Gruber, Friedrich Altmann, Ulrich Mehofer, Frank Hensel, Melanie Grandits, Chris Oostenbrink, Gerhard Stadlmayr, Paul G. Furtmüller, and Herta Steinkellner
      PNAS April 29, 2014 111 (17) 6263-6268; first published March 31, 2014. https://doi.org/10.1073/pnas.1320544111

      See companion article:

      • Designed IgM from glycoengineering
        - Apr 15, 2014
  • Biochemistry

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      Architecture and assembly of the archaeal Cdc48⋅20S proteasome
      Dominik Barthelme, James Z. Chen, Jonathan Grabenstatter, Tania A. Baker, and Robert T. Sauer
      PNAS April 29, 2014 111 (17) E1687-E1694; first published April 7, 2014. https://doi.org/10.1073/pnas.1404823111
    • You have access
      Conserved electron donor complex Dre2–Tah18 is required for ribonucleotide reductase metallocofactor assembly and DNA synthesis
      Yan Zhang, Haoran Li, Caiguo Zhang, Xiuxiang An, Lili Liu, JoAnne Stubbe, and Mingxia Huang
      PNAS April 29, 2014 111 (17) E1695-E1704; first published April 14, 2014. https://doi.org/10.1073/pnas.1405204111
    • You have access
      Selective inhibition of the function of tyrosine-phosphorylated STAT3 with a phosphorylation site-specific intrabody
      Mi Young Koo, Jiyoung Park, Jung Mi Lim, Sei Yoon Joo, Seung-Pil Shin, Hyun Bo Shim, Junho Chung, Dongmin Kang, Hyun Ae Woo, and Sue Goo Rhee
      PNAS April 29, 2014 111 (17) 6269-6274; first published April 14, 2014. https://doi.org/10.1073/pnas.1316815111
    • You have access
      Molecular recognition and modification of the 30S ribosome by the aminoglycoside-resistance methyltransferase NpmA
      Jack A. Dunkle, Kellie Vinal, Pooja M. Desai, Natalia Zelinskaya, Miloje Savic, Dayne M. West, Graeme L. Conn, and Christine M. Dunham
      PNAS April 29, 2014 111 (17) 6275-6280; first published April 9, 2014. https://doi.org/10.1073/pnas.1402789111
    • You have access
      Structure of the Toll-Spätzle complex, a molecular hub in Drosophila development and innate immunity
      Christoph Parthier, Marco Stelter, Christian Ursel, Uwe Fandrich, Hauke Lilie, Constanze Breithaupt, and Milton T. Stubbs
      PNAS April 29, 2014 111 (17) 6281-6286; first published April 14, 2014. https://doi.org/10.1073/pnas.1320678111
    • You have access
      Discovery of LPMO activity on hemicelluloses shows the importance of oxidative processes in plant cell wall degradation
      Jane W. Agger, Trine Isaksen, Anikó Várnai, Silvia Vidal-Melgosa, William G. T. Willats, Roland Ludwig, Svein J. Horn, Vincent G. H. Eijsink, and Bjørge Westereng
      PNAS April 29, 2014 111 (17) 6287-6292; first published April 14, 2014. https://doi.org/10.1073/pnas.1323629111
  • Biophysics and Computational Biology

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      Measurement of histidine pKa values and tautomer populations in invisible protein states
      Alexandar L. Hansen and Lewis E. Kay
      PNAS April 29, 2014 111 (17) E1705-E1712; first published April 14, 2014. https://doi.org/10.1073/pnas.1400577111
    • You have access
      Initial steps of inactivation at the K+ channel selectivity filter
      Andrew S. Thomson, Florian T. Heer, Frank J. Smith, Eunan Hendron, Simon Bernèche, and Brad S. Rothberg
      PNAS April 29, 2014 111 (17) E1713-E1722; first published April 14, 2014. https://doi.org/10.1073/pnas.1317573111
    • Open Access
      Training-free atomistic prediction of nucleosome occupancy
      Peter Minary and Michael Levitt
      PNAS April 29, 2014 111 (17) 6293-6298; first published April 14, 2014. https://doi.org/10.1073/pnas.1404475111
    • Open Access
      Mobile hydrogen carbonate acts as proton acceptor in photosynthetic water oxidation
      Sergey Koroidov, Dmitriy Shevela, Tatiana Shutova, Göran Samuelsson, and Johannes Messinger
      PNAS April 29, 2014 111 (17) 6299-6304; first published April 7, 2014. https://doi.org/10.1073/pnas.1323277111
    • You have access
      X-ray structure of human aquaporin 2 and its implications for nephrogenic diabetes insipidus and trafficking
      Anna Frick, Urszula Kosinska Eriksson, Fabrizio de Mattia, Fredrik Öberg, Kristina Hedfalk, Richard Neutze, Willem J. de Grip, Peter M. T. Deen, and Susanna Törnroth-Horsefield
      PNAS April 29, 2014 111 (17) 6305-6310; first published April 14, 2014. https://doi.org/10.1073/pnas.1321406111
    • You have access
      Tau mutants bind tubulin heterodimers with enhanced affinity
      Shana Elbaum-Garfinkle, Garrett Cobb, Jocelyn T. Compton, Xiao-Han Li, and Elizabeth Rhoades
      PNAS April 29, 2014 111 (17) 6311-6316; first published April 14, 2014. https://doi.org/10.1073/pnas.1315983111
  • Cell Biology

    • You have access
      Generation of multiciliated cells in functional airway epithelia from human induced pluripotent stem cells
      Amy L. Firth, Carl T. Dargitz, Susan J. Qualls, Tushar Menon, Rebecca Wright, Oded Singer, Fred H. Gage, Ajai Khanna, and Inder M. Verma
      PNAS April 29, 2014 111 (17) E1723-E1730; first published March 24, 2014. https://doi.org/10.1073/pnas.1403470111

      See companion article:

      • Making proximal airway epithelium from stem cells
        - Apr 16, 2014
    • You have access
      Cellular heterogeneity profiling by hyaluronan probes reveals an invasive but slow-growing breast tumor subset
      Mandana Veiseh, Daniel H. Kwon, Alexander D. Borowsky, Cornelia Tolg, Hon S. Leong, John D. Lewis, Eva A. Turley, and Mina J. Bissell
      PNAS April 29, 2014 111 (17) E1731-E1739; first published April 14, 2014. https://doi.org/10.1073/pnas.1402383111
    • You have access
      Sea star tenacity mediated by a protein that fragments, then aggregates
      Elise Hennebert, Ruddy Wattiez, Mélanie Demeuldre, Peter Ladurner, Dong Soo Hwang, J. Herbert Waite, and Patrick Flammang
      PNAS April 29, 2014 111 (17) 6317-6322; first published April 14, 2014. https://doi.org/10.1073/pnas.1400089111
    • Open Access
      Tumor microenvironment-based feed-forward regulation of NOS2 in breast cancer progression
      Julie L. Heinecke, Lisa A. Ridnour, Robert Y. S. Cheng, Christopher H. Switzer, Michael M. Lizardo, Chand Khanna, Sharon A. Glynn, S. Perwez Hussain, Howard A. Young, Stefan Ambs, and David A. Wink
      PNAS April 29, 2014 111 (17) 6323-6328; first published April 14, 2014. https://doi.org/10.1073/pnas.1401799111
  • Developmental Biology

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      Brf1 posttranscriptionally regulates pluripotency and differentiation responses downstream of Erk MAP kinase
      Frederick E. Tan and Michael B. Elowitz
      PNAS April 29, 2014 111 (17) E1740-E1748; first published April 14, 2014. https://doi.org/10.1073/pnas.1320873111
    • You have access
      Sp8 regulates inner ear development
      Hyeyoung A. Chung, Sofia Medina-Ruiz, and Richard M. Harland
      PNAS April 29, 2014 111 (17) 6329-6334; first published April 10, 2014. https://doi.org/10.1073/pnas.1319301111
    • You have access
      MicroRNAs are critical regulators of tuberous sclerosis complex and mTORC1 activity in the size control of the Xenopus kidney
      Daniel Romaker, Vikash Kumar, Débora M. Cerqueira, Ryan M. Cox, and Oliver Wessely
      PNAS April 29, 2014 111 (17) 6335-6340; first published April 14, 2014. https://doi.org/10.1073/pnas.1320577111
  • Ecology

    • You have access
      Endemism and functional convergence across the North American soil mycobiome
      Jennifer M. Talbot, Thomas D. Bruns, John W. Taylor, Dylan P. Smith, Sara Branco, Sydney I. Glassman, Sonya Erlandson, Rytas Vilgalys, Hui-Ling Liao, Matthew E. Smith, and Kabir G. Peay
      PNAS April 29, 2014 111 (17) 6341-6346; first published April 14, 2014. https://doi.org/10.1073/pnas.1402584111
  • Environmental Sciences

    • Open Access
      Abrupt increases in Amazonian tree mortality due to drought–fire interactions
      Paulo Monteiro Brando, Jennifer K. Balch, Daniel C. Nepstad, Douglas C. Morton, Francis E. Putz, Michael T. Coe, Divino Silvério, Marcia N. Macedo, Eric A. Davidson, Caroline C. Nóbrega, Ane Alencar, and Britaldo S. Soares-Filho
      PNAS April 29, 2014 111 (17) 6347-6352; first published April 14, 2014. https://doi.org/10.1073/pnas.1305499111
  • Evolution

    • You have access
      Storytelling and story testing in domestication
      Pascale Gerbault, Robin G. Allaby, Nicole Boivin, Anna Rudzinski, Ilaria M. Grimaldi, J. Chris Pires, Cynthia Climer Vigueira, Keith Dobney, Kristen J. Gremillion, Loukas Barton, Manuel Arroyo-Kalin, Michael D. Purugganan, Rafael Rubio de Casas, Ruth Bollongino, Joachim Burger, Dorian Q. Fuller, Daniel G. Bradley, David J. Balding, Peter J. Richerson, M. Thomas P. Gilbert, Greger Larson, and Mark G. Thomas
      PNAS April 29, 2014 111 (17) 6159-6164; first published April 21, 2014. https://doi.org/10.1073/pnas.1400425111
    • You have access
      Beyond the single gene: How epistasis and gene-by-environment effects influence crop domestication
      Andrew N. Doust, Lewis Lukens, Kenneth M. Olsen, Margarita Mauro-Herrera, Ann Meyer, and Kimberly Rogers
      PNAS April 29, 2014 111 (17) 6178-6183; first published April 21, 2014. https://doi.org/10.1073/pnas.1308940110
    • Open Access
      Enhanced evolution by stochastically variable modification of epigenetic marks in the early embryo
      Sergio Branciamore, Andrei S. Rodin, Arthur D. Riggs, and Sergei N. Rodin
      PNAS April 29, 2014 111 (17) 6353-6358; first published April 14, 2014. https://doi.org/10.1073/pnas.1402585111
    • You have access
      Partner choice and fidelity stabilize coevolution in a Cretaceous-age defensive symbiosis
      Martin Kaltenpoth, Kerstin Roeser-Mueller, Sabrina Koehler, Ashley Peterson, Taras Y. Nechitaylo, J. William Stubblefield, Gudrun Herzner, Jon Seger, and Erhard Strohm
      PNAS April 29, 2014 111 (17) 6359-6364; first published April 14, 2014. https://doi.org/10.1073/pnas.1400457111
  • Genetics

    • Open Access
      Methylation protects microRNAs from an AGO1-associated activity that uridylates 5′ RNA fragments generated by AGO1 cleavage
      Guodong Ren, Meng Xie, Shuxin Zhang, Carissa Vinovskis, Xuemei Chen, and Bin Yu
      PNAS April 29, 2014 111 (17) 6365-6370; first published April 14, 2014. https://doi.org/10.1073/pnas.1405083111
  • Immunology

    • You have access
      Optogenetic control of chemokine receptor signal and T-cell migration
      Yuexin Xu, Young-Min Hyun, Kihong Lim, Hyunwook Lee, Ryan J. Cummings, Scott A. Gerber, Seyeon Bae, Thomas Yoonsang Cho, Edith M. Lord, and Minsoo Kim
      PNAS April 29, 2014 111 (17) 6371-6376; first published April 14, 2014. https://doi.org/10.1073/pnas.1319296111
    • Open Access
      Stretched cell cycle model for proliferating lymphocytes
      Mark R. Dowling, Andrey Kan, Susanne Heinzel, Jie H. S. Zhou, Julia M. Marchingo, Cameron J. Wellard, John F. Markham, and Philip D. Hodgkin
      PNAS April 29, 2014 111 (17) 6377-6382; first published April 14, 2014. https://doi.org/10.1073/pnas.1322420111
  • Medical Sciences

    • You have access
      Humoral response to a viral glycan correlates with survival on PROSTVAC-VF
      Christopher T. Campbell, James L. Gulley, Oyindasola Oyelaran, James W. Hodge, Jeffrey Schlom, and Jeffrey C. Gildersleeve
      PNAS April 29, 2014 111 (17) E1749-E1758; first published April 14, 2014. https://doi.org/10.1073/pnas.1314722111
    • Open Access
      PDGFRβ reverses EphB4 signaling in alveolar rhabdomyosarcoma
      M. Imran Aslam, Jinu Abraham, Atiya Mansoor, Brian J. Druker, Jeffrey W. Tyner, and Charles Keller
      PNAS April 29, 2014 111 (17) 6383-6388; first published April 14, 2014. https://doi.org/10.1073/pnas.1403608111
    • You have access
      Essential role for TrpC5-containing extracellular vesicles in breast cancer with chemotherapeutic resistance
      Xin Ma, Zhen Chen, Dong Hua, Dongxu He, Linjun Wang, Peng Zhang, Junqi Wang, Yanfei Cai, Caiji Gao, Xiaodong Zhang, Fangfang Zhang, Teng Wang, Tingting Hong, Linfang Jin, Xiaowei Qi, Shuxian Chen, Xiaoting Gu, Dangtong Yang, Qiongxi Pan, Yifei Zhu, Yun Chen, Daozhen Chen, Liwen Jiang, Xiaofeng Han, Yanyun Zhang, Jian Jin, and Xiaoqiang Yao
      PNAS April 29, 2014 111 (17) 6389-6394; first published April 14, 2014. https://doi.org/10.1073/pnas.1400272111
    • You have access
      PI3K isoform dependence of PTEN-deficient tumors can be altered by the genetic context
      Fabienne Schmit, Tamara Utermark, Sen Zhang, Qi Wang, Thanh Von, Thomas M. Roberts, and Jean J. Zhao
      PNAS April 29, 2014 111 (17) 6395-6400; first published April 15, 2014. https://doi.org/10.1073/pnas.1323004111
  • Microbiology

    • You have access
      Diverse mutational pathways converge on saturable chloroquine transport via the malaria parasite’s chloroquine resistance transporter
      Robert L. Summers, Anurag Dave, Tegan J. Dolstra, Sebastiano Bellanca, Rosa V. Marchetti, Megan N. Nash, Sashika N. Richards, Valerie Goh, Robyn L. Schenk, Wilfred D. Stein, Kiaran Kirk, Cecilia P. Sanchez, Michael Lanzer, and Rowena E. Martin
      PNAS April 29, 2014 111 (17) E1759-E1767; first published April 11, 2014. https://doi.org/10.1073/pnas.1322965111
    • Open Access
      Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequences
      Waleed Nasser, Stephen B. Beres, Randall J. Olsen, Melissa A. Dean, Kelsey A. Rice, S. Wesley Long, Karl G. Kristinsson, Magnus Gottfredsson, Jaana Vuopio, Kati Raisanen, Dominique A. Caugant, Martin Steinbakk, Donald E. Low, Allison McGeer, Jessica Darenberg, Birgitta Henriques-Normark, Chris A. Van Beneden, Steen Hoffmann, and James M. Musser
      PNAS April 29, 2014 111 (17) E1768-E1776; first published April 14, 2014. https://doi.org/10.1073/pnas.1403138111
    • You have access
      Prevention of influenza by targeting host receptors using engineered proteins
      Helen Connaris, Elena A. Govorkova, Yvonne Ligertwood, Bernadette M. Dutia, Lei Yang, Sandra Tauber, Margaret A. Taylor, Nadiawati Alias, Robert Hagan, Anthony A. Nash, Robert G. Webster, and Garry L. Taylor
      PNAS April 29, 2014 111 (17) 6401-6406; first published April 14, 2014. https://doi.org/10.1073/pnas.1404205111
    • You have access
      Lipopolysaccharide O antigen size distribution is determined by a chain extension complex of variable stoichiometry in Escherichia coli O9a
      Jerry D. King, Scott Berry, Bradley R. Clarke, Richard J. Morris, and Chris Whitfield
      PNAS April 29, 2014 111 (17) 6407-6412; first published April 14, 2014. https://doi.org/10.1073/pnas.1400814111
    • You have access
      Hepatitis C virus triggers mitochondrial fission and attenuates apoptosis to promote viral persistence
      Seong-Jun Kim, Gulam H. Syed, Mohsin Khan, Wei-Wei Chiu, Muhammad A. Sohail, Robert G. Gish, and Aleem Siddiqui
      PNAS April 29, 2014 111 (17) 6413-6418; first published April 14, 2014. https://doi.org/10.1073/pnas.1321114111
    • You have access
      Incomplete Wood–Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi
      Wei-Qin Zhuang, Shan Yi, Markus Bill, Vanessa L. Brisson, Xueyang Feng, Yujie Men, Mark E. Conrad, Yinjie J. Tang, and Lisa Alvarez-Cohen
      PNAS April 29, 2014 111 (17) 6419-6424; first published April 14, 2014. https://doi.org/10.1073/pnas.1321542111
    • You have access
      Tetherin antagonism by Vpu protects HIV-infected cells from antibody-dependent cell-mediated cytotoxicity
      Juan F. Arias, Lisa N. Heyer, Benjamin von Bredow, Kim L. Weisgrau, Brian Moldt, Dennis R. Burton, Eva G. Rakasz, and David T. Evans
      PNAS April 29, 2014 111 (17) 6425-6430; first published April 14, 2014. https://doi.org/10.1073/pnas.1321507111
    • You have access
      LRP1 is a receptor for Clostridium perfringens TpeL toxin indicating a two-receptor model of clostridial glycosylating toxins
      Björn Schorch, Shuo Song, Ferdy R. van Diemen, Hans H. Bock, Petra May, Joachim Herz, Thijn R. Brummelkamp, Panagiotis Papatheodorou, and Klaus Aktories
      PNAS April 29, 2014 111 (17) 6431-6436; first published April 15, 2014. https://doi.org/10.1073/pnas.1323790111
    • You have access
      Avirulent strains of Toxoplasma gondii infect macrophages by active invasion from the phagosome
      Yanlin Zhao, Andrew H. Marple, David J. P. Ferguson, David J. Bzik, and George S. Yap
      PNAS April 29, 2014 111 (17) 6437-6442; first published April 14, 2014. https://doi.org/10.1073/pnas.1316841111
  • Neuroscience

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      Transformation of the cerebellum into more ventral brainstem fates causes cerebellar agenesis in the absence of Ptf1a function
      Kathleen J. Millen, Ekaterina Y. Steshina, Igor Y. Iskusnykh, and Victor V. Chizhikov
      PNAS April 29, 2014 111 (17) E1777-E1786; first published April 14, 2014. https://doi.org/10.1073/pnas.1315024111
    • You have access
      Homeostasis of functional maps in active dendrites emerges in the absence of individual channelostasis
      Rahul Kumar Rathour and Rishikesh Narayanan
      PNAS April 29, 2014 111 (17) E1787-E1796; first published April 7, 2014. https://doi.org/10.1073/pnas.1316599111
    • You have access
      Thalamocortical rhythms during a vibrotactile detection task
      Saskia Haegens, Yuriria Vázquez, Antonio Zainos, Manuel Alvarez, Ole Jensen, and Ranulfo Romo
      PNAS April 29, 2014 111 (17) E1797-E1805; first published April 14, 2014. https://doi.org/10.1073/pnas.1405516111
    • You have access
      Far transfer to language and math of a short software-based gaming intervention
      Andrea Paula Goldin, María Julia Hermida, Diego E. Shalom, Martín Elias Costa, Matías Lopez-Rosenfeld, María Soledad Segretin, Diego Fernández-Slezak, Sebastián J. Lipina, and Mariano Sigman
      PNAS April 29, 2014 111 (17) 6443-6448; first published April 7, 2014. https://doi.org/10.1073/pnas.1320217111
    • You have access
      Defining modulatory inputs into CNS neuronal subclasses by functional pharmacological profiling
      Shrinivasan Raghuraman, Alfredo J. Garcia, Tatiana M. Anderson, Vernon D. Twede, Kigen J. Curtice, Kevin Chase, Jan-Marino Ramirez, Baldomero M. Olivera, and Russell W. Teichert
      PNAS April 29, 2014 111 (17) 6449-6454; first published April 14, 2014. https://doi.org/10.1073/pnas.1404421111
    • You have access
      Aversive behavior induced by optogenetic inactivation of ventral tegmental area dopamine neurons is mediated by dopamine D2 receptors in the nucleus accumbens
      Teruko Danjo, Kenji Yoshimi, Kazuo Funabiki, Satoshi Yawata, and Shigetada Nakanishi
      PNAS April 29, 2014 111 (17) 6455-6460; first published April 15, 2014. https://doi.org/10.1073/pnas.1404323111
    • You have access
      PAKs inhibitors ameliorate schizophrenia-associated dendritic spine deterioration in vitro and in vivo during late adolescence
      Akiko Hayashi-Takagi, Yoichi Araki, Mayumi Nakamura, Benedikt Vollrath, Sergio G. Duron, Zhen Yan, Haruo Kasai, Richard L. Huganir, David A. Campbell, and Akira Sawa
      PNAS April 29, 2014 111 (17) 6461-6466; first published April 3, 2014. https://doi.org/10.1073/pnas.1321109111
    • Open Access
      Simultaneous selection by object-based attention in visual and frontal cortex
      Arezoo Pooresmaeili, Jasper Poort, and Pieter R. Roelfsema
      PNAS April 29, 2014 111 (17) 6467-6472; first published April 7, 2014. https://doi.org/10.1073/pnas.1316181111
    • You have access
      Regional cerebral metabolic patterns demonstrate the role of anterior forebrain mesocircuit dysfunction in the severely injured brain
      Esteban A. Fridman, Bradley J. Beattie, Allegra Broft, Steven Laureys, and Nicholas D. Schiff
      PNAS April 29, 2014 111 (17) 6473-6478; first published April 14, 2014. https://doi.org/10.1073/pnas.1320969111
    • You have access
      Gq/5-HT2c receptor signals activate a local GABAergic inhibitory feedback circuit to modulate serotonergic firing and anxiety in mice
      Katharina Spoida, Olivia A. Masseck, Evan S. Deneris, and Stefan Herlitze
      PNAS April 29, 2014 111 (17) 6479-6484; first published April 14, 2014. https://doi.org/10.1073/pnas.1321576111
  • Physiology

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      Secretion of von Willebrand factor by endothelial cells links sodium to hypercoagulability and thrombosis
      Natalia I. Dmitrieva and Maurice B. Burg
      PNAS April 29, 2014 111 (17) 6485-6490; first published April 14, 2014. https://doi.org/10.1073/pnas.1404809111
    • You have access
      Stoichiometry and specific assembly of Best ion channels
      Shashank Bharill, Zhu Fu, Raz Palty, and Ehud Y. Isacoff
      PNAS April 29, 2014 111 (17) 6491-6496; first published April 18, 2014. https://doi.org/10.1073/pnas.1400248111
  • Plant Biology

    • Open Access
      Control of vacuolar dynamics and regulation of stomatal aperture by tonoplast potassium uptake
      Zaida Andrés, Javier Pérez-Hormaeche, Eduardo O. Leidi, Kathrin Schlücking, Leonie Steinhorst, Deirdre H. McLachlan, Karin Schumacher, Alistair M. Hetherington, Jörg Kudla, Beatriz Cubero, and José M. Pardo
      PNAS April 29, 2014 111 (17) E1806-E1814; first published April 14, 2014. https://doi.org/10.1073/pnas.1320421111
    • You have access
      Convergent evolution and parallelism in plant domestication revealed by an expanding archaeological record
      Dorian Q Fuller, Tim Denham, Manuel Arroyo-Kalin, Leilani Lucas, Chris J. Stevens, Ling Qin, Robin G. Allaby, and Michael D. Purugganan
      PNAS April 29, 2014 111 (17) 6147-6152; first published April 21, 2014. https://doi.org/10.1073/pnas.1308937110
    • You have access
      Salt stress-induced Ca2+ waves are associated with rapid, long-distance root-to-shoot signaling in plants
      • From the Cover
      Won-Gyu Choi, Masatsugu Toyota, Su-Hwa Kim, Richard Hilleary, and Simon Gilroy
      PNAS April 29, 2014 111 (17) 6497-6502; first published March 24, 2014. https://doi.org/10.1073/pnas.1319955111

      See companion article:

      • Plants pass the salt via calcium waves
        - Apr 15, 2014
    • You have access
      Natural variation underlies alterations in Nramp aluminum transporter (NRAT1) expression and function that play a key role in rice aluminum tolerance
      Jian-Yong Li, Jiping Liu, Dekun Dong, Xiaomin Jia, Susan R. McCouch, and Leon V. Kochian
      PNAS April 29, 2014 111 (17) 6503-6508; first published April 11, 2014. https://doi.org/10.1073/pnas.1318975111
    • You have access
      Structural basis for regulation of rhizobial nodulation and symbiosis gene expression by the regulatory protein NolR
      Soon Goo Lee, Hari B. Krishnan, and Joseph M. Jez
      PNAS April 29, 2014 111 (17) 6509-6514; first published April 14, 2014. https://doi.org/10.1073/pnas.1402243111
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      Light intensity modulates the regulatory network of the shade avoidance response in Arabidopsis
      Micha Hersch, Séverine Lorrain, Mieke de Wit, Martine Trevisan, Karin Ljung, Sven Bergmann, and Christian Fankhauser
      PNAS April 29, 2014 111 (17) 6515-6520; first published April 14, 2014. https://doi.org/10.1073/pnas.1320355111
  • Sustainability Science

    • You have access
      Implementing the optimal provision of ecosystem services
      Stephen Polasky, David J. Lewis, Andrew J. Plantinga, and Erik Nelson
      PNAS April 29, 2014 111 (17) 6248-6253; first published April 10, 2014. https://doi.org/10.1073/pnas.1404484111
  • Systems Biology

    • You have access
      Glioblastoma cellular architectures are predicted through the characterization of two-cell interactions
      Nataly Kravchenko-Balasha, Jun Wang, Francoise Remacle, R. D. Levine, and James R. Heath
      PNAS April 29, 2014 111 (17) 6521-6526; first published April 14, 2014. https://doi.org/10.1073/pnas.1404462111

Corrections

  • You have access
    Correction for Woodhouse et al., Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids
    PNAS April 29, 2014 111 (17) 6527; first published April 9, 2014. https://doi.org/10.1073/pnas.1405833111
  • You have access
    Correction for Sah et al., Ion channel-kinase TRPM7 is required for maintaining cardiac automaticity
    PNAS April 29, 2014 111 (17) 6528; first published April 9, 2014. https://doi.org/10.1073/pnas.1405727111
  • You have access
    Correction for Cardoso et al., Natural variation of rice strigolactone biosynthesis is associated with the deletion of two MAX1 orthologs
    PNAS April 29, 2014 111 (17) 6528; first published April 9, 2014. https://doi.org/10.1073/pnas.1405730111
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Proceedings of the National Academy of Sciences: 111 (17)
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