Edited by Charles Gross, Princeton University, Princeton, NJ, and approved November 1, 2013 (received for review September 9, 2013)
Sex differences are of high scientific and societal interest because of their prominence in behavior of humans and nonhuman species. This work is highly significant because it studies a very large population of 949 youths (8–22 y, 428 males and 521 females) using the diffusion-based structural connectome of the brain, identifying novel sex differences. The results establish that male brains are optimized for intrahemispheric and female brains for interhemispheric communication. The developmental trajectories of males and females separate at a young age, demonstrating wide differences during adolescence and adulthood. The observations suggest that male brains are structured to facilitate connectivity between perception and coordinated action, whereas female brains are designed to facilitate communication between analytical and intuitive processing modes.
Sex differences in human behavior show adaptive complementarity: Males have better motor and spatial abilities, whereas females have superior memory and social cognition skills. Studies also show sex differences in human brains but do not explain this complementarity. In this work, we modeled the structural connectome using diffusion tensor imaging in a sample of 949 youths (aged 8–22 y, 428 males and 521 females) and discovered unique sex differences in brain connectivity during the course of development. Connection-wise statistical analysis, as well as analysis of regional and global network measures, presented a comprehensive description of network characteristics. In all supratentorial regions, males had greater within-hemispheric connectivity, as well as enhanced modularity and transitivity, whereas between-hemispheric connectivity and cross-module participation predominated in females. However, this effect was reversed in the cerebellar connections. Analysis of these changes developmentally demonstrated differences in trajectory between males and females mainly in adolescence and in adulthood. Overall, the results suggest that male brains are structured to facilitate connectivity between perception and coordinated action, whereas female brains are designed to facilitate communication between analytical and intuitive processing modes.
Sex differences are of enduring scientific and societal interest because of their prominence in the behavior of humans and nonhuman species (1). Behavioral differences may stem from complementary roles in procreation and social structure; examples include enhanced motor and spatial skills and greater proclivity for physical aggression in males and enhanced verbally mediated memory and social cognition in females (2, 3). With the advent of neuroimaging, multiple studies have found sex differences in the brain (4) that could underlie the behavioral differences. Males have larger crania, proportionate to their larger body size, and a higher percentage of white matter (WM), which contains myelinated axonal fibers, and cerebrospinal fluid (5), whereas women demonstrate a higher percentage of gray matter after correcting for intracranial volume effect (6). Sex differences in the relative size and shape of specific brain structures have also been reported (7), including the hippocampus, amygdala (8, 9), and corpus callosum (CC) (10). Furthermore, developmental differences in tissue growth suggest that there is an anatomical sex difference during maturation (11, 12), although links to observed behavioral differences have not been established.
Recent studies have used diffusion tensor imaging (DTI) to characterize WM architecture and underlying fiber tracts by exploiting the anisotropic water diffusion in WM (13⇓–15). Examination of DTI-based scalar measures (16) of fractional anisotropy (FA) and mean diffusivity (MD) has demonstrated diverse outcomes that include increased FA and decreased MD in males in major WM regions (17⇓–19), higher CC-specific FA in females (20, 21), and lower axial and radial diffusivity measures (22) in males. Throughout the developmental period, females displayed higher FA and lower MD in the midadolescent age (12–14 y) (23), and this result was established on a larger sample size (114 subjects) as well (24). On the other hand, sex differences on the entire age range (childhood to old age) demonstrated higher FA and lower MD in males (19, 25, 26). Similar findings of higher FA in males were obtained with tractography on major WM tracts (27, 28).
Rather than investigating individual regions or tracts in isolation, the brain can be analyzed on the whole as a large and complex network known as the human connectome (29). This connectome has the capability to provide fundamental insights into the organization and integration of brain networks (30). Advances in fiber tractography with diffusion imaging can be used to understand complex interactions among brain regions and to compute a structural connectome (SC) (31). Similar functional connectomes (FCs) can be computed using modalities like functional MRI, magnetoencephalography, and EEG. Differences in FCs have revealed sex differences and sex-by-hemispheric interactions (32), with higher local functional connectivity in females than in males (33). Although SCs of genders have displayed small-world architecture with broad-scale characteristics (34, 35), sex differences in network efficiency have been reported (36), with women having greater overall cortical connectivity (37). Insignificant differences between the genders were observed in a recent study on SCs of 439 subjects ranging in age from 12–30 y (38). However, detailed analysis on a very large sample is needed to elucidate sex differences in networks reliably, as is provided in this study. Using connection-wise regional and lobar analyses of DTI-based SCs of 949 healthy young individuals, we present a comprehensive study of developmental sex differences in brain connectivity.
We present results from a cohort of 949 healthy subjects aged 8–22 y (mean ± SD = 15.11 ± 3.50 y), including 428 males (mean ± SD = 14.94 ± 3.54 y) and 521 females (mean ± SD = 15.25 ± 3.47 y) (demographic details are provided in Table 1). The DTI for creating SCs was performed at a b value of 1,000 s/mm2 with 64 gradient directions on a Siemens 3T Verio scanner. Creating the SCs involved parcellating the brain into 95 regions (68 cortical and 27 subcortical) using a high-resolution T1 image, followed by interregional probabilistic fiber tractography, which provides the connection probability between regions, leading to the construction of the 95 × 95 network matrix called the SC of the brain (schematic in Fig. 1). Connection-wise analysis of these SC network matrices, followed by an examination of network properties using global, lobar, and regional measures, was performed. Because the age range in this population is large, to examine developmental sex differences, the population was divided into three groups, such that they have balanced sample sizes: group 1 (8–13.3 y, 158 females and 156 males), group 2 (13.4–17 y, 180 females and 131 males), and group 3 (17.1–22 y, 183 females and 141 males). These groups correspond roughly to the developmental stages of childhood, adolescence, and young adulthood. Connection-wise and global analyses were performed in each group. Details are given in Materials and Methods.
Subject demographics
Schematic of the pipeline for creating the SC.
Linear regression was applied to each of the connections in the SC matrix on sex, age, and age–sex interaction. Permutation testing (20,000 permutations over all the edges in the network taken together) was used to address the problem of multiple comparisons in the connection-based network analysis. This analysis revealed conspicuous and significant sex differences that suggest fundamentally different connectivity patterns in males and females (Fig. 2). Most supratentorial connections that were stronger in males than females were intrahemispheric (permutation-tested P < 0.05). In contrast, most supratentorial connections that were stronger in females were interhemispheric. However, in the cerebellum, the opposite pattern prevailed, with males showing stronger connections between the left cerebellar hemisphere and the contralateral cortex.
Connection-wise analysis. (A) Brain networks show increased connectivity in males (Upper) and females (Lower). Analysis on the child (B), adolescent (C), and young adult (D) groups is shown. Intrahemispheric connections are shown in blue, and interhemispheric connections are shown in orange. The depicted edges are those that survived permutation testing at P = 0.05. Node color representations are as follows: light blue, frontal; cyan, temporal; green, parietal; red, occipital; white, subcortical. GM, gray matter.
Developmental differences were studied based on the three groups described above. Connection-based analysis revealed a progression of sex differences. The youngest group (aged 8–13.3 y) demonstrated a few increased intrahemispheric connections in males and increased interhemispheric connections in females, suggesting the beginning of a divergence in developmental trajectory (Fig. 2B). This was supported by the results from the adolescent group (aged 13.4–17 y), as well as from the young adult group, where sex differences were more pronounced, with increased interhemispheric and intrahemispheric connectivity in females and males, respectively. However, in the adolescent group, the significant interhemispheric connections displayed by the females were concentrated in the frontal lobe, whereas during adulthood, females showed fewer significant edges that were dispersed across all the lobes.
The connection-wise analysis of the SCs can be quantified at the lobar level by the hemispheric connectivity ratio (HCR). The HCR is computed for each lobe and quantifies the dominance of intra- or interhemispheric connections in the network matrices, with a higher lobar HCR indicating an increased connection of that lobe within the hemisphere. We found significantly higher HCRs in males in the left frontal (P < 0.0001, T = 4.85), right frontal (P < 0.0001, T = 5.33), left temporal (P < 0.0001, T = 4.56), right temporal (P < 0.0001, T = 4.63), left parietal (P < 0.0001, T = 4.31), and right parietal (P < 0.0001, T = 4.59) lobes, indicating that males had stronger intrahemispheric connections bilaterally.
We also computed the magnitude of connectivity using the lobar connectivity weight (LCW). The LCW quantifies the connection weight between any two lobes. Consistent with the network differences observed in Fig. 2A and the HCR results, interlobar LCW in the same hemisphere was stronger in males, whereas left-to-right frontal lobe connectivity was higher in females (Table 2).
LCW differences between genders
Of the several indices of network integrity (39), two measures of segregation, modularity and transitivity, are particularly well suited for describing differences in network organization. Modularity describes how well a complex neural system can be delineated into coherent building blocks (subnetworks). Transitivity characterizes the connectivity of a given region to its neighbors. Higher transitivity indicates a greater tendency for nodes to form numerous strongly connected communities. Both modularity and transitivity were globally higher in males (T statistic = 6.1 and 5.9, P < 0.0001, respectively), consistent with stronger intrahemispheric connectivity. Global transitivity was higher in males among all three groups (children: T = 3.1, P = 0.003; adolescents: T = 4.9, P < 0.0001; young adults: T = 3.7, P = 0.0003), whereas global modularity was significantly higher in adolescents and young adult males (T = 5.1, P < 0.0001 and T = 2.7, P = 0.005, respectively). Transitivity was also computed at the lobar level for the entire population to quantify the density of the clustered brain networks in each lobe. Local transitivity was higher in males [significant in frontal lobe, T = (left) 3.97, (right) 4.13; significant in temporal lobe, T = (left) 4.96, (right) 4.09; all P < 0.0001] suggesting stronger intralobar connectivity.
Finally, we examined the participation coefficient (PC) of each individual regional node of the SC. The PC is close to one if its connections are uniformly distributed among all the lobes, and it is zero if all links connect within its own lobe. We found that numerous regions in the frontal, parietal, and temporal lobes had significantly higher PCs in females than in males (Fig. 3 and Table 3), whereas the cerebellum was the only region that displayed higher PCs in males.
Representative regions of the brain that have a higher PC at a significance level of P < 0.001. The regions have been projected onto the surface of the brain for better visualization. Red indicates a higher PC in the females, and blue indicates a higher PC in males (mainly localized to the cerebellum). Representative regions and their corresponding T values are shown in the figures. The other regions that show significant differences (with their respective T values; negative values indicate females > males) are listed in Table 3. These tests revealed that although multiple regions have higher PCs in females, the cerebellum has a higher PC in males. L, left; R, right.
Sex differences in PCs
The study examined sex differences in a large population of 949 youths by comprehensively analyzing the diffusion-based SCs of the brain. Because the population has a large age range (8–22 y), we also examined the sex differences during the course of development. Our analysis resulted in several findings, some confirming earlier hypotheses and some providing unique insight into sex differences that were not possible with alternate modalities and forms of analysis.
The myelinated axons of WM facilitate distant signal conduction. Previous data from structural imaging showed a higher proportion of cortical WM in the males, except in the CC (40, 41). A higher proportion of myelinated fibers within hemispheres in males compared with an equal or larger volume of WM in the callosum suggests that male brains are optimized for communicating within the hemispheres, whereas female brains are optimized for interhemispheric communication. Our analysis overwhelmingly supported this hypothesis at every level (global, lobar, and regional) and also revealed unique sex and developmental differences in the SC. Centered on connection-based analysis, we established that male brains are indeed structured to facilitate intrahemispheric cortical connectivity, although the opposite was observed in the cerebellum (Fig. 2A). In contrast, female brains displayed higher interhemispheric connectivity. The results of connection-based analysis are supported by the values of the HCR and LCW computed for the connectomes. Males had a higher HCR in the frontal, temporal, and parietal lobes bilaterally, indicating a higher connection within the hemisphere and within lobes. The LCW quantifies the relationship between lobes, with the males having higher within-hemisphere and across-lobe connections. In females, both of the values indicated across-hemispheric lobar connections.
With the aim of identifying at what stage of development these sex differences manifest themselves, we analyzed the population in three groups that align with childhood, adolescence, and young adulthood. The connectivity profiles showed an early separation (Fig. 2B) between the developmental trajectories of the two genders, with adolescent (Fig. 2C) and young adult (Fig. 2D) males displaying higher intrahemispheric connectivity and females of the same age displaying higher interhemispheric connectivity. Although the dominance of intrahemispheric connectivity in males was established early on and preserved throughout the course of development, interhemispheric connectivity dominance in females was seen mainly in the frontal lobe during adolescence but was more dispersed across the lobes during adulthood. Also, the gradual decrease of the dominance of interhemispheric connectivity in adulthood is most likely due to the fact that the interhemispheric connections are of lower strength than the intrahemispheric connections. The lack of a significant age-by-sex interaction in the connection-based analysis suggests that although there are not statistically significant differences in the trajectory of developmental effects between males and females, analyses of age groups allows the description of the magnitude of the sex difference during the stages of development.
In addition to the connection-wise analysis, we investigated two complementary network measures, modularity and transitivity, at the global level and found these to be higher in males than in females. These measures quantify the sparsity of the connectome, that is, how easily it can be divided into subnetworks. A high lobar-level transitivity points to a region’s neighbors being more strongly connected to each other within each lobe. A higher lobar transitivity showed that local clustering into subnetworks was high in males, resulting in an increased global modularity. This is indicative again of the enhanced local, short range within lobe connectivity in males compared with females. Analysis of the three age-related groups demonstrated males having a higher global transitivity at all age ranges, with the high global modularity in the later years past the age of 13.1 y. This suggests that the preadolescent male brains are potentially beginning to reorganize and optimize certain subnetworks, displaying significant enhancement in modularity only in adolescence. Dense networks are thus observed in adolescence that continue to optimize into adulthood. On the contrary, females begin to develop higher long-range connectivity (mainly interhemispheric).
Our observations of increased participation coefficients in females is consistent with global measures of modularity, transitivity, HCR, and LCW (Table 2), all of which indicated increased intrahemispheric connectivity in males and interhemispheric connectivity in females. For example, lower modularity in females was corroborated by an increased regional participation coefficient (Fig. 3 and Table 3), which indicated that certain regions (frontal, temporal, and parietal lobes) had greater across-lobe connectivity in females; notably, this was mainly between lobes in different hemispheres as shown via the HCR. Conversely, the cerebellum, which exerts its influence on ipsilateral motor behavior through connectivity to contralateral supratentorial areas, was the only structure with the opposite pattern. This was confirmed via connection-based analysis (Fig. 2A), which showed the left cerebellum to be connected significantly to the lobes contralaterally in males, as well as through the participation coefficient of the cerebellum, which was significantly higher in males.
Taken together, these results reveal fundamental sex differences in the structural architecture of the human brain. Male brains during development are structured to facilitate within-lobe and within-hemisphere connectivity, with networks that are transitive, modular, and discrete, whereas female brains have greater interhemispheric connectivity and greater cross-hemispheric participation. Within-hemispheric cortical processing along the posterior-anterior dimension involves the linking of perception to action, and motor action is mediated ipsilaterally by the cerebellum. Greater within-hemispheric supratentorial connectivity combined with greater cross-hemispheric cerebellar connectivity would confer an efficient system for coordinated action in males. Greater interhemispheric connectivity in females would facilitate integration of the analytical and sequential reasoning modes of the left hemisphere with the spatial, intuitive processing of information of the right hemisphere. A behavioral study on the entire sample, of which this imaging study is a subset, demonstrated pronounced sex differences, with the females outperforming males on attention, word and face memory, and social cognition tests and males performing better on spatial processing and motor and sensorimotor speed (2). These differences were mainly observed in midadolescent age (12–14 y), where males performed significantly faster on motor tasks and more accurately on spatial memory tasks. Other behavioral studies have found similar sex differences (41, 42). These behavioral studies are carried out at a denser age sampling, which is not possible for the imaging studies because the sample size in the subgroups will be too small to identify meaningful differences.
In addition to the consistency with the behavioral tasks, our findings on anatomical connectivity obtained with diffusion imaging are consistent with previous data from T1 structural imaging, showing a higher proportion of cortical WM in males (5), except for the CC (43). They are also consistent with activation studies using functional MRI, which have reported greater interhemispheric activation in females on a language task, in which they excelled (44), and greater focal intrahemispheric activation in males on a spatial task, in which they excelled (45). With respect to development, DTI studies (23, 24) have shown higher FA and lower MD in the CC in females during midadolescence, confirming a similar trend in our data. Although FA and MD provide measures of WM integrity, connectomic studies like ours are required to complete the picture of connection-wise systems.
Thus, the current study presents unique insights into sex differences using structural connectivity and measures defined on the connectome. Results are lent credence by supporting behavioral and functional studies. Our findings support the notion that the behavioral complementarity between the sexes has developmental neural substrates that could contribute toward improved understanding of this complementarity.
Institutional Review Board approval was obtained from the University of Pennsylvania and the Children’s Hospital of Philadelphia. The study includes 949 subjects (Table 1). For each subject, DTI [repetition time (TR)/echo time (TE) = 8,100/82 ms, resolution = 1.9 × 1.9 × 2 mm, 64 diffusion directions with b = 1,000 s/mm2 and 7 b = 0 images] and T1-weighted (TR/TE = 1,810/3.51 ms) MRI scans were acquired on the same Siemens 3T Verio scanner using a 32-channel head coil. Diffusion tensors were fitted to the DTI data (13⇓–15), and FA maps were computed.
The brain of each subject was parcellated into 95 regions of interest (ROIs; 68 cortical and 27 subcortical regions) of the Desikan atlas (46) using FreeSurfer (47) to act as node labels. The quality of the parcellation was manually checked for each subject. Each node label was treated as a seed region, and fibers were tracked probabilistically (48) from it to the other ROIs. We used the default parameters of two fibers per voxel and 5,000 sample streamlines for each tract to create a 95 × 95 matrix, P, of probability values. Each matrix entry Pij represents a scaled conditional probability of a pathway between the seed ROI, i, and the target ROI, j, given by 
, where Si→j denotes the number of fibers reaching the target region j from the seed region i and Si is the number of streamlines seeded in i. We scale this ratio by the surface area Ri of the ROI, i, that accounts for different sizes of the seed region. This measure [like those found in previous studies (49⇓⇓–52)] quantifies connectivity such that Pij ≈ Pji, which, on averaging, gives an undirected weighted connectivity measure. This now creates a 95 × 95 undirected symmetrical weighted connectivity network, W, called the SC. Fig. 1 gives a schematic for the pipeline.
In comparing general connectivity between groups (here, males and females), we look for significant connection-based difference in the SC W. Each connection weight Pij was linearly regressed on age, sex, and age–sex interaction, and the resulting sex T statistic was used to construct the output T matrix (95 × 95). T was thresholded at positive and negative values to retain only those connections that are significantly stronger in either group. A positive Tij indicates higher connectivity in the males, and a negative Tij indicates higher connectivity in females.
We used a nonparametric method known as permutation testing, specifically a single-threshold test, to address the problem of multiple comparisons (53) on these high-dimensional network matrices (54). We randomized the labels (males/females) 20,000 times to create 20,000 T matrices and found the maximum T statistic of the entire network for each of the permutations to capture differences in the network. A histogram of these maximum T statistics over the entire network for each permutation was then constructed, and a threshold value was computed at a significance level of 0.05. Finally, this threshold was applied on the regression statistics performed on age, sex, and age–sex interaction. The connections with a higher T statistic value than the threshold were the ones that survived the correction. The three groups (children, adolescents, and young adults) were tested in a similar manner, again at P = 0.05 and with 10,000 permutations.
The structural network was analyzed at several levels of granularity, from connection-based measures as described above to measures of modularity and transitivity at macroscopic, lobar, and regional levels.
This quantifies the dominance of intra- or interhemispheric connections in the network matrices. It is the ratio of a lobe’s number of intrahemispheric connections to its number of interhemispheric connections.
To assess both intra- and interlobe connectivity, we define an LCW for each pair of lobes (Lx, Ly): 
, where 
is the connectivity weight between regions i and j. For each LCW (Lx, Ly), a T statistic was computed between males and females while covarying for age and race.
Modularity reflects how well the network can be delineated into groups (or communities), as defined via spectral clustering that maximizes the number of intragroup connections and minimizes the number of intergroup connections. A modularity measure is then calculated from the community structure based on the proportion of links connecting regions in different groups. The weighted modularity of a network is defined as follows: 
, where wij is the connectivity weight between the regions i and j, ki is the sum of the connection weights of i, and z is the sum of all connection weights in the network.
The transitivity of a network or subnetwork, 
, where ti is the weighted geometric mean of the triad of regions around the region I, quantifies the proportion of fully connected triads of regions whose neighbors are also immediate neighbors of each other, with high transitivity indicating increased local connectivity. Transitivity is also calculated by considering lobes as subnetworks, where the brain is divided into eight lobes: right and left temporal, right and left frontal, right and left parietal, and right and left occipital. Eight anatomically consistent lobe networks are constructed from the resulting submatrices of these.
This is a regional measure that compares the total weight of the region’s intralobar connections against the total weight of its interlobar connections. The PC of a region yi is given by 
, where M is the set of subnetworks (lobes in our case) and ki(m) is the sum of the weights of all connections between i and regions in subnetwork m. A low PC indicates reduced connectivity to other subnetworks and/or increased connectivity within its own subnetwork.
We thank Karthik Prabhakaran for help in data acquisition, and Lauren J. Harris, Stewart Anderson, and Carl-Fredrik Westin for their helpful comments and suggestions. This work was supported by National Institute of Mental Health (NIMH) Grants MH089983, MH089924, MH079938, and MH092862. T.D.S. was supported by NIMH Grant K23MH098130 and the Marc Rapport Family Investigator Grant through the Brain and Behavior Research Foundation.
↵1M.I. and A.S. contributed equally to this work.
Author contributions: M.I., T.D.S., H.H., R.E.G., R.C.G., and R.V. designed research; A.S., M.A.E., K.R., and H.H. performed research; A.S. and D.P. analyzed data; and M.I., R.E.G., R.C.G., and R.V. wrote the paper.
The authors declare no conflict of interest.
This article is a PNAS Direct Submission.
See Commentary on page 577.
Data deposition: The data reported in this paper have been deposited in the dbGaP database, www.ncbi.nlm.nih.gov/gap (accession no. phs000607.v1.p1).
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