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Table of Contents

July 22, 2014; vol. 111 no. 29

This Week in PNAS

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    In This Issue
    PNAS July 22, 2014 111 (29) 10391-10392; https://doi.org/10.1073/iti2914111

Letters (Online Only)

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    Are viral small RNA regulating Dengue virus replication beyond serotype 2?
    Esteban Finol
    PNAS July 22, 2014 111 (29) E2915-E2916; first published July 14, 2014. https://doi.org/10.1073/pnas.1409972111
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    Reply to Finol: Viral small RNA from Dengue virus and its regulatory role in different serotypes
    Mazhar Hussain and Sassan Asgari
    PNAS July 22, 2014 111 (29) E2917; first published July 14, 2014. https://doi.org/10.1073/pnas.1410765111

    See companion article:

    • Dengue virus 2 encodes a functional small RNA
      - Feb 03, 2014

Science and Culture

How science intersects with culture.
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    Science and Culture: Hunting fractals in the music of J. S. Bach
    • Front Matter
    Stephen Ornes
    PNAS July 22, 2014 111 (29) 10393; https://doi.org/10.1073/pnas.1410330111

QnAs

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    QnAs with Thomas Jessell
    Prashant Nair
    PNAS July 22, 2014 111 (29) 10394-10395; first published June 9, 2014. https://doi.org/10.1073/pnas.1409335111

Commentaries

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    Identifying the components of the elusive mitochondrial permeability transition pore
    Jason Karch and Jeffery D. Molkentin
    PNAS July 22, 2014 111 (29) 10396-10397; first published July 7, 2014. https://doi.org/10.1073/pnas.1410104111

    See companion article:

    • C-subunit channel is the mPTP
      - Jun 16, 2014
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    Diverse forms of selection in evolution and computer science
    Nicholas H. Barton, Sebastian Novak, and Tiago Paixão
    PNAS July 22, 2014 111 (29) 10398-10399; first published July 9, 2014. https://doi.org/10.1073/pnas.1410107111

    See companion article:

    • Algorithms, games, and evolution
      - Jun 16, 2014
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    Pleistocene range dynamics and episodic rarity in an extinct bird
    A. Townsend Peterson
    PNAS July 22, 2014 111 (29) 10400-10401; first published June 30, 2014. https://doi.org/10.1073/pnas.1410111111

    See companion article:

    • Passenger pigeon was not always super abundant
      - Jun 16, 2014

PNAS Plus Significance Statements

Brief statements written by the authors about the significance of their papers.
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    PNAS Plus Significance Statements
    PNAS July 22, 2014 111 (29) 10402-10403; https://doi.org/10.1073/pnas.ss11129

Physical Sciences

  • Applied Mathematics

    • You have access
      A simple generative model of collective online behavior
      James P. Gleeson, Davide Cellai, Jukka-Pekka Onnela, Mason A. Porter, and Felix Reed-Tsochas
      PNAS July 22, 2014 111 (29) 10411-10415; first published July 7, 2014. https://doi.org/10.1073/pnas.1313895111
    • Open Access
      The role of older children and adults in wild poliovirus transmission
      • From the Cover
      Isobel M. Blake, Rebecca Martin, Ajay Goel, Nino Khetsuriani, Johannes Everts, Christopher Wolff, Steven Wassilak, R. Bruce Aylward, and Nicholas C. Grassly
      PNAS July 22, 2014 111 (29) 10604-10609; first published July 7, 2014. https://doi.org/10.1073/pnas.1323688111
  • Applied Physical Sciences

    • You have access
      SERS and MD simulation studies of a kinase inhibitor demonstrate the emergence of a potential drug discovery tool
      Dhanasekaran Karthigeyan, Soumik Siddhanta, Annavarapu Hari Kishore, Sathya S. R. R. Perumal, Hans Ågren, Surabhi Sudevan, Akshay V. Bhat, Karanam Balasubramanyam, Rangappa Kanchugarakoppal Subbegowda, Tapas K. Kundu, and Chandrabhas Narayana
      PNAS July 22, 2014 111 (29) 10416-10421; first published June 27, 2014. https://doi.org/10.1073/pnas.1402695111
    • You have access
      Role of projection in the control of bird flocks
      Daniel J. G. Pearce, Adam M. Miller, George Rowlands, and Matthew S. Turner
      PNAS July 22, 2014 111 (29) 10422-10426; first published July 7, 2014. https://doi.org/10.1073/pnas.1402202111
    • You have access
      Collective spin 1 singlet phase in high-pressure oxygen
      Yanier Crespo, Michele Fabrizio, Sandro Scandolo, and Erio Tosatti
      PNAS July 22, 2014 111 (29) 10427-10432; first published July 7, 2014. https://doi.org/10.1073/pnas.1404590111
    • You have access
      The magnetoelectrochemical switch
      Petru Lunca Popa, Neil T. Kemp, Hicham Majjad, Guillaume Dalmas, Vina Faramarzi, Christian Andreas, Riccardo Hertel, and Bernard Doudin
      PNAS July 22, 2014 111 (29) 10433-10437; first published July 9, 2014. https://doi.org/10.1073/pnas.1322828111
  • Chemistry

    • Open Access
      Unusual kinetics of thermal decay of dim-light photoreceptors in vertebrate vision
      Ying Guo, Sivakumar Sekharan, Jian Liu, Victor S. Batista, John C. Tully, and Elsa C. Y. Yan
      PNAS July 22, 2014 111 (29) 10438-10443; first published July 7, 2014. https://doi.org/10.1073/pnas.1410826111
    • You have access
      Detouring of cisplatin to access mitochondrial genome for overcoming resistance
      Sean Marrache, Rakesh K. Pathak, and Shanta Dhar
      PNAS July 22, 2014 111 (29) 10444-10449; first published July 7, 2014. https://doi.org/10.1073/pnas.1405244111
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      Alteration of the lipid profile in lymphomas induced by MYC overexpression
      Livia S. Eberlin, Meital Gabay, Alice C. Fan, Arvin M. Gouw, Robert J. Tibshirani, Dean W. Felsher, and Richard N. Zare
      PNAS July 22, 2014 111 (29) 10450-10455; first published July 3, 2014. https://doi.org/10.1073/pnas.1409778111
    • You have access
      Crystal structure and encapsulation dynamics of ice II-structured neon hydrate
      Xiaohui Yu, Jinlong Zhu, Shiyu Du, Hongwu Xu, Sven C. Vogel, Jiantao Han, Timothy C. Germann, Jianzhong Zhang, Changqing Jin, Joseph S. Francisco, and Yusheng Zhao
      PNAS July 22, 2014 111 (29) 10456-10461; first published July 7, 2014. https://doi.org/10.1073/pnas.1410690111
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      Testing for memory-free spectroscopic coordinates by 3D IR exchange spectroscopy
      Joanna A. Borek, Fivos Perakis, and Peter Hamm
      PNAS July 22, 2014 111 (29) 10462-10467; first published July 7, 2014. https://doi.org/10.1073/pnas.1406967111
    • Open Access
      Covalent agonists for studying G protein-coupled receptor activation
      Dietmar Weichert, Andrew C. Kruse, Aashish Manglik, Christine Hiller, Cheng Zhang, Harald Hübner, Brian K. Kobilka, and Peter Gmeiner
      PNAS July 22, 2014 111 (29) 10744-10748; first published July 8, 2014. https://doi.org/10.1073/pnas.1410415111
  • Computer Sciences

    • Open Access
      Algorithms, games, and evolution
      • From the Cover
      Erick Chastain, Adi Livnat, Christos Papadimitriou, and Umesh Vazirani
      PNAS July 22, 2014 111 (29) 10620-10623; first published June 16, 2014. https://doi.org/10.1073/pnas.1406556111

      See companion article:

      • Selection in evolution and computer science
        - Jul 09, 2014
  • Earth, Atmospheric, and Planetary Sciences

    • Open Access
      Spin crossover in ferropericlase and velocity heterogeneities in the lower mantle
      Zhongqing Wu and Renata M. Wentzcovitch
      PNAS July 22, 2014 111 (29) 10468-10472; first published July 7, 2014. https://doi.org/10.1073/pnas.1322427111
    • You have access
      Stone tools from the ancient Tongan state reveal prehistoric interaction centers in the Central Pacific
      Geoffrey R. Clark, Christian Reepmeyer, Nivaleti Melekiola, Jon Woodhead, William R. Dickinson, and Helene Martinsson-Wallin
      PNAS July 22, 2014 111 (29) 10491-10496; first published July 7, 2014. https://doi.org/10.1073/pnas.1406165111
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      Flight performance of the largest volant bird
      Daniel T. Ksepka
      PNAS July 22, 2014 111 (29) 10624-10629; first published July 7, 2014. https://doi.org/10.1073/pnas.1320297111
  • Engineering

    • Open Access
      Device design and materials optimization of conformal coating for islets of Langerhans
      • From the Cover
      Alice A. Tomei, Vita Manzoli, Christopher A. Fraker, Jaime Giraldo, Diana Velluto, Mejdi Najjar, Antonello Pileggi, R. Damaris Molano, Camillo Ricordi, Cherie L. Stabler, and Jeffrey A. Hubbell
      PNAS July 22, 2014 111 (29) 10514-10519; first published June 30, 2014. https://doi.org/10.1073/pnas.1402216111
    • Open Access
      Intratumor heterogeneity alters most effective drugs in designed combinations
      Boyang Zhao, Michael T. Hemann, and Douglas A. Lauffenburger
      PNAS July 22, 2014 111 (29) 10773-10778; first published July 7, 2014. https://doi.org/10.1073/pnas.1323934111

      See companion article:

      • Drug combinations for heterogeneous tumors
        - Sep 24, 2014
  • Environmental Sciences

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      Unspeciated organic emissions from combustion sources and their influence on the secondary organic aerosol budget in the United States
      Shantanu H. Jathar, Timothy D. Gordon, Christopher J. Hennigan, Havala O. T. Pye, George Pouliot, Peter J. Adams, Neil M. Donahue, and Allen L. Robinson
      PNAS July 22, 2014 111 (29) 10473-10478; first published July 7, 2014. https://doi.org/10.1073/pnas.1323740111
  • Physics

    • Open Access
      4D multiple-cathode ultrafast electron microscopy
      John Spencer Baskin, Haihua Liu, and Ahmed H. Zewail
      PNAS July 22, 2014 111 (29) 10479-10484; first published July 8, 2014. https://doi.org/10.1073/pnas.1411650111
    • You have access
      Giant vacuum forces via transmission lines
      Ephraim Shahmoon, Igor Mazets, and Gershon Kurizki
      PNAS July 22, 2014 111 (29) 10485-10490; first published July 7, 2014. https://doi.org/10.1073/pnas.1401346111

Social Sciences

  • Anthropology

    • You have access
      Stone tools from the ancient Tongan state reveal prehistoric interaction centers in the Central Pacific
      Geoffrey R. Clark, Christian Reepmeyer, Nivaleti Melekiola, Jon Woodhead, William R. Dickinson, and Helene Martinsson-Wallin
      PNAS July 22, 2014 111 (29) 10491-10496; first published July 7, 2014. https://doi.org/10.1073/pnas.1406165111
    • You have access
      Environmental impact of geometric earthwork construction in pre-Columbian Amazonia
      John Francis Carson, Bronwen S. Whitney, Francis E. Mayle, José Iriarte, Heiko Prümers, J. Daniel Soto, and Jennifer Watling
      PNAS July 22, 2014 111 (29) 10497-10502; first published July 7, 2014. https://doi.org/10.1073/pnas.1321770111

      See companion article:

      • Reply to Silva: South American ecotonal dynamics
        - Aug 26, 2014
  • Economic Sciences

    • Open Access
      Irrational exuberance and neural crash warning signals during endogenous experimental market bubbles
      Alec Smith, Terry Lohrenz, Justin King, P. Read Montague, and Colin F. Camerer
      PNAS July 22, 2014 111 (29) 10503-10508; first published July 7, 2014. https://doi.org/10.1073/pnas.1318416111
  • Social Sciences

    • You have access
      A simple generative model of collective online behavior
      James P. Gleeson, Davide Cellai, Jukka-Pekka Onnela, Mason A. Porter, and Felix Reed-Tsochas
      PNAS July 22, 2014 111 (29) 10411-10415; first published July 7, 2014. https://doi.org/10.1073/pnas.1313895111

Biological Sciences

  • Anthropology

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      Temporal labyrinths of eastern Eurasian Pleistocene humans
      Xiu-Jie Wu, Isabelle Crevecoeur, Wu Liu, Song Xing, and Erik Trinkaus
      PNAS July 22, 2014 111 (29) 10509-10513; first published July 7, 2014. https://doi.org/10.1073/pnas.1410735111
  • Applied Biological Sciences

    • Open Access
      Device design and materials optimization of conformal coating for islets of Langerhans
      • From the Cover
      Alice A. Tomei, Vita Manzoli, Christopher A. Fraker, Jaime Giraldo, Diana Velluto, Mejdi Najjar, Antonello Pileggi, R. Damaris Molano, Camillo Ricordi, Cherie L. Stabler, and Jeffrey A. Hubbell
      PNAS July 22, 2014 111 (29) 10514-10519; first published June 30, 2014. https://doi.org/10.1073/pnas.1402216111
  • Biochemistry

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      Phosphoproteomic analysis identifies the tumor suppressor PDCD4 as a RSK substrate negatively regulated by 14-3-3
      Jacob A. Galan, Kathryn M. Geraghty, Geneviève Lavoie, Evgeny Kanshin, Joseph Tcherkezian, Viviane Calabrese, Grace R. Jeschke, Benjamin E. Turk, Bryan A. Ballif, John Blenis, Pierre Thibault, and Philippe P. Roux
      PNAS July 22, 2014 111 (29) E2918-E2927; first published July 7, 2014. https://doi.org/10.1073/pnas.1405601111
    • You have access
      DEAD-box protein CYT-19 is activated by exposed helices in a group I intron RNA
      Inga Jarmoskaite, Hari Bhaskaran, Soenke Seifert, and Rick Russell
      PNAS July 22, 2014 111 (29) E2928-E2936; first published July 7, 2014. https://doi.org/10.1073/pnas.1404307111
    • You have access
      Molecular mechanisms for the regulation of histone mRNA stem-loop–binding protein by phosphorylation
      Jun Zhang, Dazhi Tan, Eugene F. DeRose, Lalith Perera, Zbigniew Dominski, William F. Marzluff, Liang Tong, and Traci M. Tanaka Hall
      PNAS July 22, 2014 111 (29) E2937-E2946; first published July 7, 2014. https://doi.org/10.1073/pnas.1406381111
    • You have access
      Structure of a new DNA-binding domain which regulates pathogenesis in a wide variety of fungi
      • Inaugural Article
      Matthew B. Lohse, Oren S. Rosenberg, Jeffery S. Cox, Robert M. Stroud, Janet S. Finer-Moore, and Alexander D. Johnson
      PNAS July 22, 2014 111 (29) 10404-10410; first published July 3, 2014. https://doi.org/10.1073/pnas.1410110111

      See companion article:

      • Profile of Alexander D. Johnson
        - Aug 11, 2014
    • You have access
      Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea
      Yuchen Liu, Akiyoshi Nakamura, Yuto Nakazawa, Nozomi Asano, Kara A. Ford, Michael J. Hohn, Isao Tanaka, Min Yao, and Dieter Söll
      PNAS July 22, 2014 111 (29) 10520-10525; first published July 7, 2014. https://doi.org/10.1073/pnas.1411267111
    • You have access
      Crystal structure of mammalian selenocysteine-dependent iodothyronine deiodinase suggests a peroxiredoxin-like catalytic mechanism
      Ulrich Schweizer, Christine Schlicker, Doreen Braun, Josef Köhrle, and Clemens Steegborn
      PNAS July 22, 2014 111 (29) 10526-10531; first published July 7, 2014. https://doi.org/10.1073/pnas.1323873111
    • You have access
      Identification of a two-component fatty acid kinase responsible for host fatty acid incorporation by Staphylococcus aureus
      Joshua B. Parsons, Tyler C. Broussard, Jeffrey L. Bose, Jason W. Rosch, Pamela Jackson, Chitra Subramanian, and Charles O. Rock
      PNAS July 22, 2014 111 (29) 10532-10537; first published July 7, 2014. https://doi.org/10.1073/pnas.1408797111
    • You have access
      The Legionella effector SidC defines a unique family of ubiquitin ligases important for bacterial phagosomal remodeling
      FoSheng Hsu, Xi Luo, Jiazhang Qiu, Yan-Bin Teng, Jianping Jin, Marcus B. Smolka, Zhao-Qing Luo, and Yuxin Mao
      PNAS July 22, 2014 111 (29) 10538-10543; first published July 8, 2014. https://doi.org/10.1073/pnas.1402605111
    • You have access
      Allosteric regulation of γ-secretase activity by a phenylimidazole-type γ-secretase modulator
      Koji Takeo, Shun Tanimura, Takehiro Shinoda, Satoko Osawa, Ivan Krasmirov Zahariev, Naoki Takegami, Yoshiko Ishizuka-Katsura, Naoko Shinya, Shizuka Takagi-Niidome, Aya Tominaga, Noboru Ohsawa, Tomomi Kimura-Someya, Mikako Shirouzu, Satoshi Yokoshima, Shigeyuki Yokoyama, Tohru Fukuyama, Taisuke Tomita, and Takeshi Iwatsubo
      PNAS July 22, 2014 111 (29) 10544-10549; first published July 9, 2014. https://doi.org/10.1073/pnas.1402171111
  • Biophysics and Computational Biology

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      Catalytic strategy used by the myosin motor to hydrolyze ATP
      Farooq Ahmad Kiani and Stefan Fischer
      PNAS July 22, 2014 111 (29) E2947-E2956; first published July 8, 2014. https://doi.org/10.1073/pnas.1401862111
    • You have access
      SERS and MD simulation studies of a kinase inhibitor demonstrate the emergence of a potential drug discovery tool
      Dhanasekaran Karthigeyan, Soumik Siddhanta, Annavarapu Hari Kishore, Sathya S. R. R. Perumal, Hans Ågren, Surabhi Sudevan, Akshay V. Bhat, Karanam Balasubramanyam, Rangappa Kanchugarakoppal Subbegowda, Tapas K. Kundu, and Chandrabhas Narayana
      PNAS July 22, 2014 111 (29) 10416-10421; first published June 27, 2014. https://doi.org/10.1073/pnas.1402695111
    • Open Access
      Unusual kinetics of thermal decay of dim-light photoreceptors in vertebrate vision
      Ying Guo, Sivakumar Sekharan, Jian Liu, Victor S. Batista, John C. Tully, and Elsa C. Y. Yan
      PNAS July 22, 2014 111 (29) 10438-10443; first published July 7, 2014. https://doi.org/10.1073/pnas.1410826111
    • Open Access
      Energy landscape views for interplays among folding, binding, and allostery of calmodulin domains
      Wenfei Li, Wei Wang, and Shoji Takada
      PNAS July 22, 2014 111 (29) 10550-10555; first published July 7, 2014. https://doi.org/10.1073/pnas.1402768111
    • Open Access
      Simple chained guide trees give high-quality protein multiple sequence alignments
      Kieran Boyce, Fabian Sievers, and Desmond G. Higgins
      PNAS July 22, 2014 111 (29) 10556-10561; first published July 7, 2014. https://doi.org/10.1073/pnas.1405628111

      See companion article:

      • Real and simulated proteins in MSAs
        - Jan 06, 2015
    • You have access
      Modulation of frustration in folding by sequence permutation
      R. Paul Nobrega, Karunesh Arora, Sagar V. Kathuria, Rita Graceffa, Raul A. Barrea, Liang Guo, Srinivas Chakravarthy, Osman Bilsel, Thomas C. Irving, Charles L. Brooks III, and C. Robert Matthews
      PNAS July 22, 2014 111 (29) 10562-10567; first published July 7, 2014. https://doi.org/10.1073/pnas.1324230111
  • Cell Biology

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      Ras transformation uncouples the kinesin-coordinated cellular nutrient response
      Elma Zaganjor, Lauren M. Weil, Joshua X. Gonzales, John D. Minna, and Melanie H. Cobb
      PNAS July 22, 2014 111 (29) 10568-10573; first published July 7, 2014. https://doi.org/10.1073/pnas.1411016111
    • You have access
      Metformin and phenformin deplete tricarboxylic acid cycle and glycolytic intermediates during cell transformation and NTPs in cancer stem cells
      Andreas Janzer, Natalie J. German, Karina N. Gonzalez-Herrera, John M. Asara, Marcia C. Haigis, and Kevin Struhl
      PNAS July 22, 2014 111 (29) 10574-10579; first published July 7, 2014. https://doi.org/10.1073/pnas.1409844111
    • Open Access
      An uncoupling channel within the c-subunit ring of the F1FO ATP synthase is the mitochondrial permeability transition pore
      • From the Cover
      Kambiz N. Alavian, Gisela Beutner, Emma Lazrove, Silvio Sacchetti, Han-A Park, Pawel Licznerski, Hongmei Li, Panah Nabili, Kathryn Hockensmith, Morven Graham, George A. Porter Jr., and Elizabeth A. Jonas
      PNAS July 22, 2014 111 (29) 10580-10585; first published June 16, 2014. https://doi.org/10.1073/pnas.1401591111

      See companion article:

      • Mitochondrial pore rediscovered
        - Jul 07, 2014
    • You have access
      TOR complex 2-Ypk1 signaling is an essential positive regulator of the general amino acid control response and autophagy
      Ariadne Vlahakis, Martin Graef, Jodi Nunnari, and Ted Powers
      PNAS July 22, 2014 111 (29) 10586-10591; first published July 7, 2014. https://doi.org/10.1073/pnas.1406305111
    • You have access
      Tif1γ regulates the TGF-β1 receptor and promotes physiological aging of hematopoietic stem cells
      Ronan Quéré, Laetitia Saint-Paul, Virginie Carmignac, Romain Z. Martin, Marie-Lorraine Chrétien, Anne Largeot, Arlette Hammann, Jean-Paul Pais de Barros, Jean-Noël Bastie, and Laurent Delva
      PNAS July 22, 2014 111 (29) 10592-10597; first published July 7, 2014. https://doi.org/10.1073/pnas.1405546111
  • Developmental Biology

    • Open Access
      Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos
      Jacques P. Bothma, Hernan G. Garcia, Emilia Esposito, Gavin Schlissel, Thomas Gregor, and Michael Levine
      PNAS July 22, 2014 111 (29) 10598-10603; first published July 3, 2014. https://doi.org/10.1073/pnas.1410022111
  • Ecology

    • You have access
      Role of projection in the control of bird flocks
      Daniel J. G. Pearce, Adam M. Miller, George Rowlands, and Matthew S. Turner
      PNAS July 22, 2014 111 (29) 10422-10426; first published July 7, 2014. https://doi.org/10.1073/pnas.1402202111
    • You have access
      Environmental impact of geometric earthwork construction in pre-Columbian Amazonia
      John Francis Carson, Bronwen S. Whitney, Francis E. Mayle, José Iriarte, Heiko Prümers, J. Daniel Soto, and Jennifer Watling
      PNAS July 22, 2014 111 (29) 10497-10502; first published July 7, 2014. https://doi.org/10.1073/pnas.1321770111

      See companion article:

      • Reply to Silva: South American ecotonal dynamics
        - Aug 26, 2014
    • Open Access
      The role of older children and adults in wild poliovirus transmission
      • From the Cover
      Isobel M. Blake, Rebecca Martin, Ajay Goel, Nino Khetsuriani, Johannes Everts, Christopher Wolff, Steven Wassilak, R. Bruce Aylward, and Nicholas C. Grassly
      PNAS July 22, 2014 111 (29) 10604-10609; first published July 7, 2014. https://doi.org/10.1073/pnas.1323688111
    • You have access
      Invasive plants have broader physiological niches
      Steven I. Higgins and David M. Richardson
      PNAS July 22, 2014 111 (29) 10610-10614; first published July 2, 2014. https://doi.org/10.1073/pnas.1406075111
  • Environmental Sciences

    • You have access
      Herbarium specimens show contrasting phenological responses to Himalayan climate
      Robbie Hart, Jan Salick, Sailesh Ranjitkar, and Jianchu Xu
      PNAS July 22, 2014 111 (29) 10615-10619; first published July 7, 2014. https://doi.org/10.1073/pnas.1403376111
  • Evolution

    • Open Access
      The fossilized birth–death process for coherent calibration of divergence-time estimates
      Tracy A. Heath, John P. Huelsenbeck, and Tanja Stadler
      PNAS July 22, 2014 111 (29) E2957-E2966; first published July 9, 2014. https://doi.org/10.1073/pnas.1319091111
    • Open Access
      Algorithms, games, and evolution
      • From the Cover
      Erick Chastain, Adi Livnat, Christos Papadimitriou, and Umesh Vazirani
      PNAS July 22, 2014 111 (29) 10620-10623; first published June 16, 2014. https://doi.org/10.1073/pnas.1406556111

      See companion article:

      • Selection in evolution and computer science
        - Jul 09, 2014
    • You have access
      Flight performance of the largest volant bird
      Daniel T. Ksepka
      PNAS July 22, 2014 111 (29) 10624-10629; first published July 7, 2014. https://doi.org/10.1073/pnas.1320297111
    • You have access
      Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel
      Young Bun Kim, Jung Hun Oh, Lauren J. McIver, Eugenia Rashkovetsky, Katarzyna Michalak, Harold R. Garner, Lin Kang, Eviatar Nevo, Abraham B. Korol, and Pawel Michalak
      PNAS July 22, 2014 111 (29) 10630-10635; first published July 8, 2014. https://doi.org/10.1073/pnas.1410372111
    • You have access
      Drastic population fluctuations explain the rapid extinction of the passenger pigeon
      • From the Cover
      Chih-Ming Hung, Pei-Jen L. Shaner, Robert M. Zink, Wei-Chung Liu, Te-Chin Chu, Wen-San Huang, and Shou-Hsien Li
      PNAS July 22, 2014 111 (29) 10636-10641; first published June 16, 2014. https://doi.org/10.1073/pnas.1401526111

      See companion article:

      • Range and population in an extinct bird
        - Jun 30, 2014
  • Genetics

    • Open Access
      Optimized CRISPR/Cas tools for efficient germline and somatic genome engineering in Drosophila
      Fillip Port, Hui-Min Chen, Tzumin Lee, and Simon L. Bullock
      PNAS July 22, 2014 111 (29) E2967-E2976; first published July 7, 2014. https://doi.org/10.1073/pnas.1405500111
    • Open Access
      Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality
      Lanjuan Hu, Ning Li, Chunming Xu, Silin Zhong, Xiuyun Lin, Jingjing Yang, Tianqi Zhou, Anzhi Yuliang, Ying Wu, Yun-Ru Chen, Xiaofeng Cao, Assaf Zemach, Sachin Rustgi, Diter von Wettstein, and Bao Liu
      PNAS July 22, 2014 111 (29) 10642-10647; first published July 7, 2014. https://doi.org/10.1073/pnas.1410761111
    • You have access
      FGF5 is a crucial regulator of hair length in humans
      Claire A. Higgins, Lynn Petukhova, Sivan Harel, Yuan Y. Ho, Esther Drill, Lawrence Shapiro, Muhammad Wajid, and Angela M. Christiano
      PNAS July 22, 2014 111 (29) 10648-10653; first published July 2, 2014. https://doi.org/10.1073/pnas.1402862111
    • You have access
      Extensive pathogenicity of mitochondrial heteroplasmy in healthy human individuals
      Kaixiong Ye, Jian Lu, Fei Ma, Alon Keinan, and Zhenglong Gu
      PNAS July 22, 2014 111 (29) 10654-10659; first published July 7, 2014. https://doi.org/10.1073/pnas.1403521111

      See companion article:

      • MPS and mitochondrial heteroplasmy
        - Oct 15, 2014
  • Immunology and Inflammation

    • You have access
      Adaptive immunity to murine skin commensals
      Wei Shen, Wenqing Li, Julie A. Hixon, Nicolas Bouladoux, Yasmine Belkaid, Amiran Dzutzev, and Scott K. Durum
      PNAS July 22, 2014 111 (29) E2977-E2986; first published July 7, 2014. https://doi.org/10.1073/pnas.1401820111
    • You have access
      Bioengineering T cells to target carbohydrate to treat opportunistic fungal infection
      Pappanaicken R. Kumaresan, Pallavi R. Manuri, Nathaniel D. Albert, Sourindra Maiti, Harjeet Singh, Tiejuan Mi, Jason Roszik, Brian Rabinovich, Simon Olivares, Janani Krishnamurthy, Ling Zhang, Amer M. Najjar, M. Helen Huls, Dean A. Lee, Richard E. Champlin, Dimitrios P. Kontoyiannis, and Laurence J. N. Cooper
      PNAS July 22, 2014 111 (29) 10660-10665; first published July 7, 2014. https://doi.org/10.1073/pnas.1312789111
    • You have access
      25-Hydroxycholesterol acts as an amplifier of inflammatory signaling
      Elizabeth S. Gold, Alan H. Diercks, Irina Podolsky, Rebecca L. Podyminogin, Peter S. Askovich, Piper M. Treuting, and Alan Aderem
      PNAS July 22, 2014 111 (29) 10666-10671; first published July 3, 2014. https://doi.org/10.1073/pnas.1404271111
    • You have access
      Commensal microbes drive intestinal inflammation by IL-17–producing CD4+ T cells through ICOSL and OX40L costimulation in the absence of B7-1 and B7-2
      Lijun Xin, Tony T. Jiang, Vandana Chaturvedi, Jeremy M. Kinder, James M. Ertelt, Jared H. Rowe, Kris A. Steinbrecher, and Sing Sing Way
      PNAS July 22, 2014 111 (29) 10672-10677; first published July 7, 2014. https://doi.org/10.1073/pnas.1402336111
  • Medical Sciences

    • You have access
      Detouring of cisplatin to access mitochondrial genome for overcoming resistance
      Sean Marrache, Rakesh K. Pathak, and Shanta Dhar
      PNAS July 22, 2014 111 (29) 10444-10449; first published July 7, 2014. https://doi.org/10.1073/pnas.1405244111
    • Open Access
      Efficient germ-line transmission obtained with transgene-free induced pluripotent stem cells
      Sen Wu, Yuanyuan Wu, Xi Zhang, and Mario R. Capecchi
      PNAS July 22, 2014 111 (29) 10678-10683; first published July 7, 2014. https://doi.org/10.1073/pnas.1409933111
    • You have access
      Tumor suppressor p53 cooperates with SIRT6 to regulate gluconeogenesis by promoting FoxO1 nuclear exclusion
      Ping Zhang, Bo Tu, Hua Wang, Ziyang Cao, Ming Tang, Chaohua Zhang, Bo Gu, Zhiming Li, Lina Wang, Yang Yang, Ying Zhao, Haiying Wang, Jianyuan Luo, Chu-Xia Deng, Bin Gao, Robert G. Roeder, and Wei-Guo Zhu
      PNAS July 22, 2014 111 (29) 10684-10689; first published July 9, 2014. https://doi.org/10.1073/pnas.1411026111

      See companion article:

      • Focus on PCK
        - Sep 26, 2014
    • Open Access
      Discrete conformations of epitope II on the hepatitis C virus E2 protein for antibody-mediated neutralization and nonneutralization
      Lu Deng, Li Ma, Maria Luisa Virata-Theimer, Lilin Zhong, Hailing Yan, Zhong Zhao, Evi Struble, Stephen Feinstone, Harvey Alter, and Pei Zhang
      PNAS July 22, 2014 111 (29) 10690-10695; first published July 7, 2014. https://doi.org/10.1073/pnas.1411317111
    • You have access
      G-CSF Induces Membrane Expression of a Myeloperoxidase Glycovariant that Operates as an E-selectin Ligand on Human Myeloid Cells
      Cristina I. Silvescu and Robert Sackstein
      PNAS July 22, 2014 111 (29) 10696-10701; first published July 7, 2014. https://doi.org/10.1073/pnas.1320833111
  • Microbiology

    • You have access
      Rhizobial homologs of the fatty acid transporter FadL facilitate perception of long-chain acyl-homoserine lactone signals
      Elizaveta Krol and Anke Becker
      PNAS July 22, 2014 111 (29) 10702-10707; first published July 7, 2014. https://doi.org/10.1073/pnas.1404929111
    • You have access
      Enhancement of protein expression by alphavirus replicons by designing self-replicating subgenomic RNAs
      Dal Young Kim, Svetlana Atasheva, Alexander J. McAuley, Jessica A. Plante, Elena I. Frolova, David W. C. Beasley, and Ilya Frolov
      PNAS July 22, 2014 111 (29) 10708-10713; first published July 7, 2014. https://doi.org/10.1073/pnas.1408677111
    • Open Access
      Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses
      Bonnie L. Hurwitz, Anton H. Westveld, Jennifer R. Brum, and Matthew B. Sullivan
      PNAS July 22, 2014 111 (29) 10714-10719; first published July 7, 2014. https://doi.org/10.1073/pnas.1319778111
  • Neuroscience

    • You have access
      Astrocyte activation is suppressed in both normal and injured brain by FGF signaling
      Wenfei Kang, Francesca Balordi, Nan Su, Lin Chen, Gordon Fishell, and Jean M. Hébert
      PNAS July 22, 2014 111 (29) E2987-E2995; first published July 7, 2014. https://doi.org/10.1073/pnas.1320401111
    • Open Access
      Genetic evidence that Celsr3 and Celsr2, together with Fzd3, regulate forebrain wiring in a Vangl-independent manner
      Yibo Qu, Yuhua Huang, Jia Feng, Gonzalo Alvarez-Bolado, Elizabeth A. Grove, Yingzi Yang, Fadel Tissir, Libing Zhou, and Andre M. Goffinet
      PNAS July 22, 2014 111 (29) E2996-E3004; first published July 7, 2014. https://doi.org/10.1073/pnas.1402105111

      See companion article:

      • Frizzled3 in axon growth and guidance
        - May 05, 2014
    • You have access
      Frizzled3 is required for the development of multiple axon tracts in the mouse central nervous system
      Zhong L. Hua, Sangmin Jeon, Michael J. Caterina, and Jeremy Nathans
      PNAS July 22, 2014 111 (29) E3005-E3014; first published May 5, 2014. https://doi.org/10.1073/pnas.1406399111

      See companion article:

      • Celsr and forebrain wiring
        - Jul 07, 2014
    • Open Access
      Irrational exuberance and neural crash warning signals during endogenous experimental market bubbles
      Alec Smith, Terry Lohrenz, Justin King, P. Read Montague, and Colin F. Camerer
      PNAS July 22, 2014 111 (29) 10503-10508; first published July 7, 2014. https://doi.org/10.1073/pnas.1318416111
    • Open Access
      CA3 size predicts the precision of memory recall
      Martin J. Chadwick, Heidi M. Bonnici, and Eleanor A. Maguire
      PNAS July 22, 2014 111 (29) 10720-10725; first published July 7, 2014. https://doi.org/10.1073/pnas.1319641111
    • You have access
      The transcription factor Fezf2 directs the differentiation of neural stem cells in the subventricular zone toward a cortical phenotype
      Annalisa Zuccotti, Corentin Le Magueresse, Min Chen, Angela Neitz, and Hannah Monyer
      PNAS July 22, 2014 111 (29) 10726-10731; first published July 7, 2014. https://doi.org/10.1073/pnas.1320290111
    • You have access
      Intramuscular injection of α-synuclein induces CNS α-synuclein pathology and a rapid-onset motor phenotype in transgenic mice
      Amanda N. Sacino, Mieu Brooks, Michael A. Thomas, Alex B. McKinney, Sooyeon Lee, Robert W. Regenhardt, Nicholas H. McGarvey, Jacob I. Ayers, Lucia Notterpek, David R. Borchelt, Todd E. Golde, and Benoit I. Giasson
      PNAS July 22, 2014 111 (29) 10732-10737; first published July 7, 2014. https://doi.org/10.1073/pnas.1321785111
    • You have access
      Neural correlates of auditory streaming in an objective behavioral task
      Naoya Itatani and Georg M. Klump
      PNAS July 22, 2014 111 (29) 10738-10743; first published July 7, 2014. https://doi.org/10.1073/pnas.1321487111
  • Pharmacology

    • Open Access
      Covalent agonists for studying G protein-coupled receptor activation
      Dietmar Weichert, Andrew C. Kruse, Aashish Manglik, Christine Hiller, Cheng Zhang, Harald Hübner, Brian K. Kobilka, and Peter Gmeiner
      PNAS July 22, 2014 111 (29) 10744-10748; first published July 8, 2014. https://doi.org/10.1073/pnas.1410415111
    • You have access
      Structural basis for cooperative interactions of substituted 2-aminopyrimidines with the acetylcholine binding protein
      Katarzyna Kaczanowska, Michal Harel, Zoran Radić, Jean-Pierre Changeux, M. G. Finn, and Palmer Taylor
      PNAS July 22, 2014 111 (29) 10749-10754; first published July 8, 2014. https://doi.org/10.1073/pnas.1410992111
    • You have access
      Mechanisms underlying the activation of G-protein–gated inwardly rectifying K+ (GIRK) channels by the novel anxiolytic drug, ML297
      Nicole Wydeven, Ezequiel Marron Fernandez de Velasco, Yu Du, Michael A. Benneyworth, Matthew C. Hearing, Rachel A. Fischer, Mark John Thomas, C. David Weaver, and Kevin Wickman
      PNAS July 22, 2014 111 (29) 10755-10760; first published July 7, 2014. https://doi.org/10.1073/pnas.1405190111
  • Physiology

    • Open Access
      Effect of sleep deprivation on the human metabolome
      Sarah K. Davies, Joo Ern Ang, Victoria L. Revell, Ben Holmes, Anuska Mann, Francesca P. Robertson, Nanyi Cui, Benita Middleton, Katrin Ackermann, Manfred Kayser, Alfred E. Thumser, Florence I. Raynaud, and Debra J. Skene
      PNAS July 22, 2014 111 (29) 10761-10766; first published July 7, 2014. https://doi.org/10.1073/pnas.1402663111
  • Plant Biology

    • You have access
      Auxin inhibits stomatal development through MONOPTEROS repression of a mobile peptide gene STOMAGEN in mesophyll
      Jing-Yi Zhang, Sheng-Bo He, Ling Li, and Hong-Quan Yang
      PNAS July 22, 2014 111 (29) E3015-E3023; first published July 7, 2014. https://doi.org/10.1073/pnas.1400542111
  • Population Biology

    • Open Access
      Contact between bird species of different lifespans can promote the emergence of highly pathogenic avian influenza strains
      Paul S. Wikramaratna, Oliver G. Pybus, and Sunetra Gupta
      PNAS July 22, 2014 111 (29) 10767-10772; first published June 23, 2014. https://doi.org/10.1073/pnas.1401849111
  • Systems Biology

    • Open Access
      Intratumor heterogeneity alters most effective drugs in designed combinations
      Boyang Zhao, Michael T. Hemann, and Douglas A. Lauffenburger
      PNAS July 22, 2014 111 (29) 10773-10778; first published July 7, 2014. https://doi.org/10.1073/pnas.1323934111

      See companion article:

      • Drug combinations for heterogeneous tumors
        - Sep 24, 2014

Corrections

  • You have access
    Editorial Expression of Concern: Experimental evidence of massivescale emotional contagion through social networks
    PNAS July 22, 2014 111 (29) 10779; first published July 3, 2014. https://doi.org/10.1073/pnas.1412469111
  • You have access
    Correction for Kramer et al., Experimental evidence of massive-scale emotional contagion through social networks
    PNAS July 22, 2014 111 (29) 10779; first published July 3, 2014. https://doi.org/10.1073/pnas.1412583111
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Proceedings of the National Academy of Sciences: 111 (29)
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