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Research Article

Microspatial gene expression patterns in the Amazon River Plume

Brandon M. Satinsky, Byron C. Crump, Christa B. Smith, Shalabh Sharma, Brian L. Zielinski, Mary Doherty, Jun Meng, Shulei Sun, Patricia M. Medeiros, John H. Paul, Victoria J. Coles, Patricia L. Yager, and Mary Ann Moran
  1. Departments of aMicrobiology and
  2. cMarine Sciences, University of Georgia, Athens, GA 30602;
  3. bCollege of Earth, Ocean, and Atmospheric Science, Oregon State University, Corvallis, OR 97331;
  4. dCollege of Marine Science, University of South Florida, St. Petersburg, FL 33701;
  5. eHorn Point Laboratory, University of Maryland Center for Environmental Science, Cambridge, MD 21613; and
  6. fCenter for Research in Biological Systems, University of California, San Diego, La Jolla, CA 92093

See allHide authors and affiliations

PNAS July 29, 2014 111 (30) 11085-11090; first published July 14, 2014; https://doi.org/10.1073/pnas.1402782111
Brandon M. Satinsky
Departments of aMicrobiology and
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Byron C. Crump
bCollege of Earth, Ocean, and Atmospheric Science, Oregon State University, Corvallis, OR 97331;
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Christa B. Smith
cMarine Sciences, University of Georgia, Athens, GA 30602;
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Shalabh Sharma
cMarine Sciences, University of Georgia, Athens, GA 30602;
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Brian L. Zielinski
dCollege of Marine Science, University of South Florida, St. Petersburg, FL 33701;
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Mary Doherty
eHorn Point Laboratory, University of Maryland Center for Environmental Science, Cambridge, MD 21613; and
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Jun Meng
cMarine Sciences, University of Georgia, Athens, GA 30602;
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Shulei Sun
fCenter for Research in Biological Systems, University of California, San Diego, La Jolla, CA 92093
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Patricia M. Medeiros
cMarine Sciences, University of Georgia, Athens, GA 30602;
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John H. Paul
dCollege of Marine Science, University of South Florida, St. Petersburg, FL 33701;
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Victoria J. Coles
eHorn Point Laboratory, University of Maryland Center for Environmental Science, Cambridge, MD 21613; and
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Patricia L. Yager
cMarine Sciences, University of Georgia, Athens, GA 30602;
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Mary Ann Moran
cMarine Sciences, University of Georgia, Athens, GA 30602;
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  • For correspondence: mmoran@uga.edu
  1. Edited by Edward F. DeLong, Massachusetts Institute of Technology, Cambridge, MA, and approved June 23, 2014 (received for review February 14, 2014)

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Article Information

vol. 111 no. 30 11085-11090
DOI: 
https://doi.org/10.1073/pnas.1402782111
PubMed: 
25024226

Published By: 
National Academy of Sciences
Print ISSN: 
0027-8424
Online ISSN: 
1091-6490
History: 
  • Published in issue July 29, 2014.
  • Published first July 14, 2014.


Author Information

  1. Brandon M. Satinskya,
  2. Byron C. Crumpb,
  3. Christa B. Smithc,
  4. Shalabh Sharmac,
  5. Brian L. Zielinskid,
  6. Mary Dohertye,
  7. Jun Mengc,
  8. Shulei Sunf,
  9. Patricia M. Medeirosc,
  10. John H. Pauld,
  11. Victoria J. Colese,
  12. Patricia L. Yagerc, and
  13. Mary Ann Moranc,1
  1. Departments of aMicrobiology and
  2. cMarine Sciences, University of Georgia, Athens, GA 30602;
  3. bCollege of Earth, Ocean, and Atmospheric Science, Oregon State University, Corvallis, OR 97331;
  4. dCollege of Marine Science, University of South Florida, St. Petersburg, FL 33701;
  5. eHorn Point Laboratory, University of Maryland Center for Environmental Science, Cambridge, MD 21613; and
  6. fCenter for Research in Biological Systems, University of California, San Diego, La Jolla, CA 92093
  1. Edited by Edward F. DeLong, Massachusetts Institute of Technology, Cambridge, MA, and approved June 23, 2014 (received for review February 14, 2014)

Footnotes

  • ↵1To whom correspondence should be addressed. Email: mmoran{at}uga.edu.
  • Author contributions: B.M.S., B.C.C., J.H.P., P.L.Y., and M.A.M. designed research; B.M.S., B.C.C., C.B.S., B.L.Z., M.D., and J.M. performed research; P.M.M. and V.J.C. contributed new reagents/analytic tools; B.M.S., B.C.C., C.B.S., S. Sharma, M.D., S. Sun, P.M.M., P.L.Y., and M.A.M. analyzed data; and B.M.S. and M.A.M. wrote the paper.

  • The authors declare no conflict of interest.

  • This article is a PNAS Direct Submission.

  • Data deposition: The sequences reported in this paper have been deposited in the Sequence Read Archive, www.ncbi.nlm.nih.gov/sra [accession nos. SRP039390 (metagenomes), SRP037995 (nonselective metatranscriptomes), and SRP039544 (poly(A)-selected metatranscriptomes)].

  • This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1402782111/-/DCSupplemental.

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Article usage

Article usage: July 2014 to March 2021

AbstractFullPdf
Jul 2014438343248
Aug 2014257860106
Sep 20146714443
Oct 20146084659
Nov 20143003140
Dec 20142692030
Total 20148809244526
Jan 20152174038
Feb 20151802833
Mar 20152425957
Apr 20151703645
May 20151472629
Jun 20151321746
Jul 20151102024
Aug 20151082920
Sep 2015921727
Oct 20151441635
Nov 20151361331
Dec 20151041728
Total 20151782318413
Jan 2016801640
Feb 2016831315
Mar 2016932428
Apr 2016962134
May 2016751820
Jun 2016642632
Jul 2016541517
Aug 2016621221
Sep 2016811322
Oct 20161031925
Nov 2016651128
Dec 2016681213
Total 2016924200295
Jan 201748718
Feb 2017662129
Mar 2017721515
Apr 2017681135
May 2017711920
Jun 2017561423
Jul 2017492215
Aug 201737179
Sep 2017471116
Oct 2017451811
Nov 2017501417
Dec 2017471311
Total 2017656182219
Jan 2018581818
Feb 2018574833
Mar 2018514429
Apr 2018564921
May 2018453810
Jun 2018403011
Jul 2018363118
Aug 2018834019
Sep 2018493622
Oct 2018124919
Nov 201898231
Dec 2018125023
Total 2018508515254
Jan 2019114218
Feb 201993213
Mar 201975118
Apr 201986923
May 2019123517
Jun 201984626
Jul 2019175030
Aug 2019113824
Sep 201993113
Oct 201911259
Nov 2019112524
Dec 201952311
Total 2019119467226
Jan 2020186521
Feb 202074221
Mar 20207359
Apr 202093024
May 202092018
Jun 202094427
Jul 2020122212
Aug 202081915
Sep 2020102012
Oct 202092112
Nov 2020105911
Dec 2020122932
Total 2020120406214
Jan 2021112112
Feb 202174733
Mar 2021343
Total 2021217248
Total1293924042195
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Gene expression in the Amazon River Plume
Brandon M. Satinsky, Byron C. Crump, Christa B. Smith, Shalabh Sharma, Brian L. Zielinski, Mary Doherty, Jun Meng, Shulei Sun, Patricia M. Medeiros, John H. Paul, Victoria J. Coles, Patricia L. Yager, Mary Ann Moran
Proceedings of the National Academy of Sciences Jul 2014, 111 (30) 11085-11090; DOI: 10.1073/pnas.1402782111

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Gene expression in the Amazon River Plume
Brandon M. Satinsky, Byron C. Crump, Christa B. Smith, Shalabh Sharma, Brian L. Zielinski, Mary Doherty, Jun Meng, Shulei Sun, Patricia M. Medeiros, John H. Paul, Victoria J. Coles, Patricia L. Yager, Mary Ann Moran
Proceedings of the National Academy of Sciences Jul 2014, 111 (30) 11085-11090; DOI: 10.1073/pnas.1402782111
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Proceedings of the National Academy of Sciences: 111 (30)
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