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Table of Contents

August 18, 2015; vol. 112 no. 33

This Week in PNAS

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    In This Issue
    PNAS August 18, 2015 112 (33) 10069-10070; https://doi.org/10.1073/iti3315112

Letters (Online Only)

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    To prevent earthquake triggering, pressure changes due to CO2 injection need to be limited
    Mark D. Zoback and Steven M. Gorelick
    PNAS August 18, 2015 112 (33) E4510; first published August 3, 2015. https://doi.org/10.1073/pnas.1508533112
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    Reply to Zoback and Gorelick: Geologic carbon storage remains a safe strategy to significantly reduce CO2 emissions
    Victor Vilarrasa and Jesus Carrera
    PNAS August 18, 2015 112 (33) E4511; first published August 3, 2015. https://doi.org/10.1073/pnas.1511302112

    See companion article:

    • Geologic carbon storage remains a safe option
      - Apr 20, 2015

News Feature

An in-depth look at trending science issues.
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    News Feature: Intimate partnerships
    • Front Matter
    John Carey
    PNAS August 18, 2015 112 (33) 10071-10073; https://doi.org/10.1073/pnas.1514276112

QnAs

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    QnAs with Ben Barres
    Prashant Nair
    PNAS August 18, 2015 112 (33) 10074-10075; first published August 3, 2015. https://doi.org/10.1073/pnas.1512539112

    See companion article:

    • WldS axonal protection is locally mediated
      - Jul 24, 2015

Retrospective

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    Stanton J. Peale: Deciphering the motions of planets and moons
    Robin M. Canup
    PNAS August 18, 2015 112 (33) 10076-10077; first published July 20, 2015. https://doi.org/10.1073/pnas.1512536112

Commentaries

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    Disadvantage, self-control, and health
    Nancy E. Adler
    PNAS August 18, 2015 112 (33) 10078-10079; first published August 10, 2015. https://doi.org/10.1073/pnas.1512781112

    See companion article:

    • Skin-deep resilience
      - Jul 13, 2015
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    Genetic selection by high altitude: Beware of experiments at ambient conditions
    Josef T. Prchal
    PNAS August 18, 2015 112 (33) 10080-10081; first published August 10, 2015. https://doi.org/10.1073/pnas.1512899112

    See companion article:

    • Endothelin receptor B and cardiac performance
      - Aug 03, 2015
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    Swift antibodies to counter emerging viruses
    Dennis R. Burton and Erica Ollmann Saphire
    PNAS August 18, 2015 112 (33) 10082-10083; first published August 10, 2015. https://doi.org/10.1073/pnas.1513050112

    See companion article:

    • Anti-MERS coronavirus human neutralizing antibody
      - Jul 27, 2015
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    Caspary’s conductor
    Rochus Benni Franke
    PNAS August 18, 2015 112 (33) 10084-10085; first published August 18, 2015. https://doi.org/10.1073/pnas.1512640112

    See companion article:

    • MYB36 orchestrates Casparian strip formation
      - Jun 29, 2015

PNAS Plus Significance Statements

Brief statements written by the authors about the significance of their papers.
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    PNAS Plus Significance Statements
    PNAS August 18, 2015 112 (33) 10086-10088; https://doi.org/10.1073/pnas.ss11233

Perspective

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    The heterogeneity of mental representation: Ending the imagery debate
    Joel Pearson and Stephen M. Kosslyn
    PNAS August 18, 2015 112 (33) 10089-10092; first published July 14, 2015. https://doi.org/10.1073/pnas.1504933112

Symbioses Becoming Permanent: The Origins and Evolutionary Trajectories of Organelles Sackler Colloquium (Free Online)

  • Introduction

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      Symbiosis becoming permanent: Survival of the luckiest
      • From the Cover
      Patrick J. Keeling, John P. McCutcheon, and W. Ford Doolittle
      PNAS August 18, 2015 112 (33) 10101-10103; first published August 18, 2015. https://doi.org/10.1073/pnas.1513346112
  • Colloquium Papers

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      Toward major evolutionary transitions theory 2.0
      Eörs Szathmáry
      PNAS August 18, 2015 112 (33) 10104-10111; first published April 2, 2015. https://doi.org/10.1073/pnas.1421398112
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      Major evolutionary transitions in individuality
      Stuart A. West, Roberta M. Fisher, Andy Gardner, and E. Toby Kiers
      PNAS August 18, 2015 112 (33) 10112-10119; first published May 11, 2015. https://doi.org/10.1073/pnas.1421402112
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      Reproduction, symbiosis, and the eukaryotic cell
      Peter Godfrey-Smith
      PNAS August 18, 2015 112 (33) 10120-10125; first published April 14, 2015. https://doi.org/10.1073/pnas.1421378112
    • You have access
      Rethinking evolutionary individuality
      Marc Ereshefsky and Makmiller Pedroso
      PNAS August 18, 2015 112 (33) 10126-10132; first published May 26, 2015. https://doi.org/10.1073/pnas.1421377112
    • You have access
      Mosaic nature of the mitochondrial proteome: Implications for the origin and evolution of mitochondria
      Michael W. Gray
      PNAS August 18, 2015 112 (33) 10133-10138; first published April 6, 2015. https://doi.org/10.1073/pnas.1421379112
    • You have access
      Endosymbiotic gene transfer from prokaryotic pangenomes: Inherited chimerism in eukaryotes
      Chuan Ku, Shijulal Nelson-Sathi, Mayo Roettger, Sriram Garg, Einat Hazkani-Covo, and William F. Martin
      PNAS August 18, 2015 112 (33) 10139-10146; first published March 2, 2015. https://doi.org/10.1073/pnas.1421385112
    • You have access
      Genomic perspectives on the birth and spread of plastids
      John M. Archibald
      PNAS August 18, 2015 112 (33) 10147-10153; first published April 20, 2015. https://doi.org/10.1073/pnas.1421374112
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      Mitochondrial genomes are retained by selective constraints on protein targeting
      Patrik Björkholm, Ajith Harish, Erik Hagström, Andreas M. Ernst, and Siv G. E. Andersson
      PNAS August 18, 2015 112 (33) 10154-10161; first published July 20, 2015. https://doi.org/10.1073/pnas.1421372112
    • You have access
      Maternal transmission, sex ratio distortion, and mitochondria
      Steve J. Perlman, Christina N. Hodson, Phineas T. Hamilton, George P. Opit, and Brent E. Gowen
      PNAS August 18, 2015 112 (33) 10162-10168; first published April 13, 2015. https://doi.org/10.1073/pnas.1421391112
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      Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole
      Gordon M. Bennett and Nancy A. Moran
      PNAS August 18, 2015 112 (33) 10169-10176; first published February 23, 2015. https://doi.org/10.1073/pnas.1421388112
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      Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes
      David Roy Smith and Patrick J. Keeling
      PNAS August 18, 2015 112 (33) 10177-10184; first published March 26, 2015. https://doi.org/10.1073/pnas.1422049112
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      The massive mitochondrial genome of the angiosperm Silene noctiflora is evolving by gain or loss of entire chromosomes
      Zhiqiang Wu, Jocelyn M. Cuthbert, Douglas R. Taylor, and Daniel B. Sloan
      PNAS August 18, 2015 112 (33) 10185-10191; first published May 5, 2015. https://doi.org/10.1073/pnas.1421397112
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      Genome expansion via lineage splitting and genome reduction in the cicada endosymbiont Hodgkinia
      Matthew A. Campbell, James T. Van Leuven, Russell C. Meister, Kaitlin M. Carey, Chris Simon, and John P. McCutcheon
      PNAS August 18, 2015 112 (33) 10192-10199; first published May 18, 2015. https://doi.org/10.1073/pnas.1421386112
    • You have access
      Factors mediating plastid dependency and the origins of parasitism in apicomplexans and their close relatives
      Jan Janouškovec, Denis V. Tikhonenkov, Fabien Burki, Alexis T. Howe, Martin Kolísko, Alexander P. Mylnikov, and Patrick J. Keeling
      PNAS August 18, 2015 112 (33) 10200-10207; first published February 25, 2015. https://doi.org/10.1073/pnas.1423790112
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      Metabolic connectivity as a driver of host and endosymbiont integration
      Slim Karkar, Fabio Facchinelli, Dana C. Price, Andreas P. M. Weber, and Debashish Bhattacharya
      PNAS August 18, 2015 112 (33) 10208-10215; first published March 30, 2015. https://doi.org/10.1073/pnas.1421375112
    • You have access
      Mitochondrial ATP synthase is dispensable in blood-stage Plasmodium berghei rodent malaria but essential in the mosquito phase
      Angelika Sturm, Vanessa Mollard, Anton Cozijnsen, Christopher D. Goodman, and Geoffrey I. McFadden
      PNAS August 18, 2015 112 (33) 10216-10223; first published March 23, 2015. https://doi.org/10.1073/pnas.1423959112
    • You have access
      Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist
      Moriya Ohkuma, Satoko Noda, Satoshi Hattori, Toshiya Iida, Masahiro Yuki, David Starns, Jun-ichi Inoue, Alistair C. Darby, and Yuichi Hongoh
      PNAS August 18, 2015 112 (33) 10224-10230; first published May 15, 2015. https://doi.org/10.1073/pnas.1423979112
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      Why chloroplasts and mitochondria retain their own genomes and genetic systems: Colocation for redox regulation of gene expression
      John F. Allen
      PNAS August 18, 2015 112 (33) 10231-10238; first published May 18, 2015. https://doi.org/10.1073/pnas.1500012112
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      An ancestral bacterial division system is widespread in eukaryotic mitochondria
      Michelle M. Leger, Markéta Petrů, Vojtěch Žárský, Laura Eme, Čestmír Vlček, Tommy Harding, B. Franz Lang, Marek Eliáš, Pavel Doležal, and Andrew J. Roger
      PNAS August 18, 2015 112 (33) 10239-10246; first published March 23, 2015. https://doi.org/10.1073/pnas.1421392112
    • You have access
      Integration of plastids with their hosts: Lessons learned from dinoflagellates
      Richard G. Dorrell and Christopher J. Howe
      PNAS August 18, 2015 112 (33) 10247-10254; first published May 20, 2015. https://doi.org/10.1073/pnas.1421380112
    • You have access
      Signatures of host/symbiont genome coevolution in insect nutritional endosymbioses
      Alex C. C. Wilson and Rebecca P. Duncan
      PNAS August 18, 2015 112 (33) 10255-10261; first published May 26, 2015. https://doi.org/10.1073/pnas.1423305112
    • You have access
      Evolutionary signals of symbiotic persistence in the legume–rhizobia mutualism
      Gijsbert D. A. Werner, William K. Cornwell, Johannes H. C. Cornelissen, and E. Toby Kiers
      PNAS August 18, 2015 112 (33) 10262-10269; first published June 3, 2015. https://doi.org/10.1073/pnas.1424030112
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      Endosymbiosis and its implications for evolutionary theory
      Maureen A. O’Malley
      PNAS August 18, 2015 112 (33) 10270-10277; first published April 16, 2015. https://doi.org/10.1073/pnas.1421389112
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      Eukaryogenesis, how special really?
      Austin Booth and W. Ford Doolittle
      PNAS August 18, 2015 112 (33) 10278-10285; first published April 16, 2015. https://doi.org/10.1073/pnas.1421376112

      See companion article:

      • Eukaryotes: Being and becoming
        - Aug 17, 2015

Physical Sciences

  • Applied Mathematics

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      Iterative phasing for fluctuation X-ray scattering
      Jeffrey J. Donatelli, Peter H. Zwart, and James A. Sethian
      PNAS August 18, 2015 112 (33) 10286-10291; first published August 3, 2015. https://doi.org/10.1073/pnas.1513738112
  • Chemistry

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      Defect tolerance and the effect of structural inhomogeneity in plasmonic DNA-nanoparticle superlattices
      Michael B. Ross, Jessie C. Ku, Martin G. Blaber, Chad A. Mirkin, and George C. Schatz
      PNAS August 18, 2015 112 (33) 10292-10297; first published August 3, 2015. https://doi.org/10.1073/pnas.1513058112
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      Siderocalin-mediated recognition, sensitization, and cellular uptake of actinides
      Benjamin E. Allred, Peter B. Rupert, Stacey S. Gauny, Dahlia D. An, Corie Y. Ralston, Manuel Sturzbecher-Hoehne, Roland K. Strong, and Rebecca J. Abergel
      PNAS August 18, 2015 112 (33) 10342-10347; first published August 3, 2015. https://doi.org/10.1073/pnas.1508902112
  • Earth, Atmospheric, and Planetary Sciences

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      Flourishing ocean drives the end-Permian marine mass extinction
      Martin Schobben, Alan Stebbins, Abbas Ghaderi, Harald Strauss, Dieter Korn, and Christoph Korte
      PNAS August 18, 2015 112 (33) 10298-10303; first published August 3, 2015. https://doi.org/10.1073/pnas.1503755112
  • Engineering

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      Flow perfusion effects on three-dimensional culture and drug sensitivity of Ewing sarcoma
      Marco Santoro, Salah-Eddine Lamhamedi-Cherradi, Brian A. Menegaz, Joseph A. Ludwig, and Antonios G. Mikos
      PNAS August 18, 2015 112 (33) 10304-10309; first published August 3, 2015. https://doi.org/10.1073/pnas.1506684112
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      Switching of perpendicularly polarized nanomagnets with spin orbit torque without an external magnetic field by engineering a tilted anisotropy
      Long You, OukJae Lee, Debanjan Bhowmik, Dominic Labanowski, Jeongmin Hong, Jeffrey Bokor, and Sayeef Salahuddin
      PNAS August 18, 2015 112 (33) 10310-10315; first published August 3, 2015. https://doi.org/10.1073/pnas.1507474112
  • Physics

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      Spin-liquid polymorphism in a correlated electron system on the threshold of superconductivity
      Igor Zaliznyak, Andrei T. Savici, Mark Lumsden, Alexei Tsvelik, Rongwei Hu, and Cedomir Petrovic
      PNAS August 18, 2015 112 (33) 10316-10320; first published August 3, 2015. https://doi.org/10.1073/pnas.1503559112
    • Open Access
      Critical waves and the length problem of biology
      Robert B. Laughlin
      PNAS August 18, 2015 112 (33) 10371-10376; first published August 3, 2015. https://doi.org/10.1073/pnas.1422855112
    • You have access
      Heat dissipation guides activation in signaling proteins
      Jeffrey K. Weber, Diwakar Shukla, and Vijay S. Pande
      PNAS August 18, 2015 112 (33) 10377-10382; first published August 3, 2015. https://doi.org/10.1073/pnas.1501804112
    • Open Access
      Ancient hot and cold genes and chemotherapy resistance emergence
      Amy Wu, Qiucen Zhang, Guillaume Lambert, Zayar Khin, Robert A. Gatenby, Hyunsung John Kim, Nader Pourmand, Kimberly Bussey, Paul C. W. Davies, James C. Sturm, and Robert H. Austin
      PNAS August 18, 2015 112 (33) 10467-10472; first published August 3, 2015. https://doi.org/10.1073/pnas.1512396112
    • Open Access
      Complex dynamics of synergistic coinfections on realistically clustered networks
      Laurent Hébert-Dufresne and Benjamin M. Althouse
      PNAS August 18, 2015 112 (33) 10551-10556; first published July 20, 2015. https://doi.org/10.1073/pnas.1507820112

Social Sciences

  • Psychological and Cognitive Sciences

    • Open Access
      The search engine manipulation effect (SEME) and its possible impact on the outcomes of elections
      Robert Epstein and Ronald E. Robertson
      PNAS August 18, 2015 112 (33) E4512-E4521; first published August 4, 2015. https://doi.org/10.1073/pnas.1419828112
    • You have access
      Countering antivaccination attitudes
      Zachary Horne, Derek Powell, John E. Hummel, and Keith J. Holyoak
      PNAS August 18, 2015 112 (33) 10321-10324; first published August 3, 2015. https://doi.org/10.1073/pnas.1504019112

      See companion article:

      • Vaccine attitude change: What works, what doesn't
        - Nov 23, 2015
    • You have access
      Self-control forecasts better psychosocial outcomes but faster epigenetic aging in low-SES youth
      • From the Cover
      Gregory E. Miller, Tianyi Yu, Edith Chen, and Gene H. Brody
      PNAS August 18, 2015 112 (33) 10325-10330; first published July 13, 2015. https://doi.org/10.1073/pnas.1505063112

      See companion article:

      • Disadvantage, self-control, and health
        - Aug 10, 2015
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      Expressing our internal states and understanding those of others
      Giuseppe Di Cesare, Cinzia Di Dio, Massimo Marchi, and Giacomo Rizzolatti
      PNAS August 18, 2015 112 (33) 10331-10335; first published August 4, 2015. https://doi.org/10.1073/pnas.1512133112
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      Large-scale evidence of dependency length minimization in 37 languages
      Richard Futrell, Kyle Mahowald, and Edward Gibson
      PNAS August 18, 2015 112 (33) 10336-10341; first published August 3, 2015. https://doi.org/10.1073/pnas.1502134112
  • Sustainability Science

    • Open Access
      Systematic review of current efforts to quantify the impacts of climate change on undernutrition
      Revati K. Phalkey, Clara Aranda-Jan, Sabrina Marx, Bernhard Höfle, and Rainer Sauerborn
      PNAS August 18, 2015 112 (33) E4522-E4529; first published July 27, 2015. https://doi.org/10.1073/pnas.1409769112

Biological Sciences

  • Biochemistry

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      Creative template-dependent synthesis by human polymerase mu
      Andrea F. Moon, Rajendrakumar A. Gosavi, Thomas A. Kunkel, Lars C. Pedersen, and Katarzyna Bebenek
      PNAS August 18, 2015 112 (33) E4530-E4536; first published August 3, 2015. https://doi.org/10.1073/pnas.1505798112

      See companion article:

      • Polymerases in nonhomologous end joining
        - Aug 03, 2015
    • You have access
      Essential role for polymerase specialization in cellular nonhomologous end joining
      John M. Pryor, Crystal A. Waters, Ana Aza, Kenjiro Asagoshi, Christina Strom, Piotr A. Mieczkowski, Luis Blanco, and Dale A. Ramsden
      PNAS August 18, 2015 112 (33) E4537-E4545; first published August 3, 2015. https://doi.org/10.1073/pnas.1505805112

      See companion article:

      • 2-nt gap synthesis by human polymerase mu
        - Aug 03, 2015
    • You have access
      Siderocalin-mediated recognition, sensitization, and cellular uptake of actinides
      Benjamin E. Allred, Peter B. Rupert, Stacey S. Gauny, Dahlia D. An, Corie Y. Ralston, Manuel Sturzbecher-Hoehne, Roland K. Strong, and Rebecca J. Abergel
      PNAS August 18, 2015 112 (33) 10342-10347; first published August 3, 2015. https://doi.org/10.1073/pnas.1508902112
    • You have access
      SufB intein of Mycobacterium tuberculosis as a sensor for oxidative and nitrosative stresses
      Natalya I. Topilina, Cathleen M. Green, Pradeepa Jayachandran, Danielle S. Kelley, Matthew J. Stanger, Carol Lyn Piazza, Sasmita Nayak, and Marlene Belfort
      PNAS August 18, 2015 112 (33) 10348-10353; first published August 3, 2015. https://doi.org/10.1073/pnas.1512777112
    • You have access
      Consecutive radical S-adenosylmethionine methylations form the ethyl side chain in thienamycin biosynthesis
      Daniel R. Marous, Evan P. Lloyd, Andrew R. Buller, Kristos A. Moshos, Tyler L. Grove, Anthony J. Blaszczyk, Squire J. Booker, and Craig A. Townsend
      PNAS August 18, 2015 112 (33) 10354-10358; first published August 3, 2015. https://doi.org/10.1073/pnas.1508615112
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      C-S bond cleavage by a polyketide synthase domain
      Ming Ma, Jeremy R. Lohman, Tao Liu, and Ben Shen
      PNAS August 18, 2015 112 (33) 10359-10364; first published August 3, 2015. https://doi.org/10.1073/pnas.1508437112
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      Identification of a functional hotspot on ubiquitin required for stimulation of methyltransferase activity on chromatin
      Matthew T. Holt, Yael David, Sam Pollock, Zhanyun Tang, Jongcheol Jeon, Jaehoon Kim, Robert G. Roeder, and Tom W. Muir
      PNAS August 18, 2015 112 (33) 10365-10370; first published August 3, 2015. https://doi.org/10.1073/pnas.1504483112
  • Biophysics and Computational Biology

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      Iterative phasing for fluctuation X-ray scattering
      Jeffrey J. Donatelli, Peter H. Zwart, and James A. Sethian
      PNAS August 18, 2015 112 (33) 10286-10291; first published August 3, 2015. https://doi.org/10.1073/pnas.1513738112
    • Open Access
      Critical waves and the length problem of biology
      Robert B. Laughlin
      PNAS August 18, 2015 112 (33) 10371-10376; first published August 3, 2015. https://doi.org/10.1073/pnas.1422855112
    • You have access
      Heat dissipation guides activation in signaling proteins
      Jeffrey K. Weber, Diwakar Shukla, and Vijay S. Pande
      PNAS August 18, 2015 112 (33) 10377-10382; first published August 3, 2015. https://doi.org/10.1073/pnas.1501804112
    • Open Access
      How amide hydrogens exchange in native proteins
      Filip Persson and Bertil Halle
      PNAS August 18, 2015 112 (33) 10383-10388; first published July 20, 2015. https://doi.org/10.1073/pnas.1506079112
    • You have access
      Nucleotides regulate the mechanical hierarchy between subdomains of the nucleotide binding domain of the Hsp70 chaperone DnaK
      Daniela Bauer, Dale R. Merz, Benjamin Pelz, Kelly E. Theisen, Gail Yacyshyn, Dejana Mokranjac, Ruxandra I. Dima, Matthias Rief, and Gabriel Žoldák
      PNAS August 18, 2015 112 (33) 10389-10394; first published August 3, 2015. https://doi.org/10.1073/pnas.1504625112
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      Mapping the conformation of a client protein through the Hsp70 functional cycle
      Ashok Sekhar, Rina Rosenzweig, Guillaume Bouvignies, and Lewis E. Kay
      PNAS August 18, 2015 112 (33) 10395-10400; first published August 3, 2015. https://doi.org/10.1073/pnas.1508504112
  • Cell Biology

    • You have access
      Dynamic localization of Mps1 kinase to kinetochores is essential for accurate spindle microtubule attachment
      Zhen Dou, Xing Liu, Wenwen Wang, Tongge Zhu, Xinghui Wang, Leilei Xu, Ariane Abrieu, Chuanhai Fu, Donald L. Hill, and Xuebiao Yao
      PNAS August 18, 2015 112 (33) E4546-E4555; first published August 3, 2015. https://doi.org/10.1073/pnas.1508791112
    • You have access
      Mitochondrial ATP synthase is dispensable in blood-stage Plasmodium berghei rodent malaria but essential in the mosquito phase
      Angelika Sturm, Vanessa Mollard, Anton Cozijnsen, Christopher D. Goodman, and Geoffrey I. McFadden
      PNAS August 18, 2015 112 (33) 10216-10223; first published March 23, 2015. https://doi.org/10.1073/pnas.1423959112
    • You have access
      An ancestral bacterial division system is widespread in eukaryotic mitochondria
      Michelle M. Leger, Markéta Petrů, Vojtěch Žárský, Laura Eme, Čestmír Vlček, Tommy Harding, B. Franz Lang, Marek Eliáš, Pavel Doležal, and Andrew J. Roger
      PNAS August 18, 2015 112 (33) 10239-10246; first published March 23, 2015. https://doi.org/10.1073/pnas.1421392112
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      Nuclear receptor RORα regulates pathologic retinal angiogenesis by modulating SOCS3-dependent inflammation
      Ye Sun, Chi-Hsiu Liu, John Paul SanGiovanni, Lucy P. Evans, Katherine T. Tian, Bing Zhang, Andreas Stahl, William T. Pu, Theodore M. Kamenecka, Laura A. Solt, and Jing Chen
      PNAS August 18, 2015 112 (33) 10401-10406; first published August 4, 2015. https://doi.org/10.1073/pnas.1504387112
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      Pleiotropic age-dependent effects of mitochondrial dysfunction on epidermal stem cells
      Michael C. Velarde, Marco Demaria, Simon Melov, and Judith Campisi
      PNAS August 18, 2015 112 (33) 10407-10412; first published August 3, 2015. https://doi.org/10.1073/pnas.1505675112
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      Synthetic physical interactions map kinetochore regulators and regions sensitive to constitutive Cdc14 localization
      Guðjón Ólafsson and Peter H. Thorpe
      PNAS August 18, 2015 112 (33) 10413-10418; first published August 3, 2015. https://doi.org/10.1073/pnas.1506101112
  • Environmental Sciences

    • Open Access
      Linking fecal bacteria in rivers to landscape, geochemical, and hydrologic factors and sources at the basin scale
      Marc P. Verhougstraete, Sherry L. Martin, Anthony D. Kendall, David W. Hyndman, and Joan B. Rose
      PNAS August 18, 2015 112 (33) 10419-10424; first published August 3, 2015. https://doi.org/10.1073/pnas.1415836112
  • Evolution

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      Toward major evolutionary transitions theory 2.0
      Eörs Szathmáry
      PNAS August 18, 2015 112 (33) 10104-10111; first published April 2, 2015. https://doi.org/10.1073/pnas.1421398112
    • You have access
      Major evolutionary transitions in individuality
      Stuart A. West, Roberta M. Fisher, Andy Gardner, and E. Toby Kiers
      PNAS August 18, 2015 112 (33) 10112-10119; first published May 11, 2015. https://doi.org/10.1073/pnas.1421402112
    • You have access
      Reproduction, symbiosis, and the eukaryotic cell
      Peter Godfrey-Smith
      PNAS August 18, 2015 112 (33) 10120-10125; first published April 14, 2015. https://doi.org/10.1073/pnas.1421378112
    • You have access
      Rethinking evolutionary individuality
      Marc Ereshefsky and Makmiller Pedroso
      PNAS August 18, 2015 112 (33) 10126-10132; first published May 26, 2015. https://doi.org/10.1073/pnas.1421377112
    • You have access
      Mosaic nature of the mitochondrial proteome: Implications for the origin and evolution of mitochondria
      Michael W. Gray
      PNAS August 18, 2015 112 (33) 10133-10138; first published April 6, 2015. https://doi.org/10.1073/pnas.1421379112
    • You have access
      Endosymbiotic gene transfer from prokaryotic pangenomes: Inherited chimerism in eukaryotes
      Chuan Ku, Shijulal Nelson-Sathi, Mayo Roettger, Sriram Garg, Einat Hazkani-Covo, and William F. Martin
      PNAS August 18, 2015 112 (33) 10139-10146; first published March 2, 2015. https://doi.org/10.1073/pnas.1421385112
    • You have access
      Genomic perspectives on the birth and spread of plastids
      John M. Archibald
      PNAS August 18, 2015 112 (33) 10147-10153; first published April 20, 2015. https://doi.org/10.1073/pnas.1421374112
    • You have access
      Mitochondrial genomes are retained by selective constraints on protein targeting
      Patrik Björkholm, Ajith Harish, Erik Hagström, Andreas M. Ernst, and Siv G. E. Andersson
      PNAS August 18, 2015 112 (33) 10154-10161; first published July 20, 2015. https://doi.org/10.1073/pnas.1421372112
    • You have access
      Maternal transmission, sex ratio distortion, and mitochondria
      Steve J. Perlman, Christina N. Hodson, Phineas T. Hamilton, George P. Opit, and Brent E. Gowen
      PNAS August 18, 2015 112 (33) 10162-10168; first published April 13, 2015. https://doi.org/10.1073/pnas.1421391112
    • You have access
      Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole
      Gordon M. Bennett and Nancy A. Moran
      PNAS August 18, 2015 112 (33) 10169-10176; first published February 23, 2015. https://doi.org/10.1073/pnas.1421388112
    • You have access
      Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes
      David Roy Smith and Patrick J. Keeling
      PNAS August 18, 2015 112 (33) 10177-10184; first published March 26, 2015. https://doi.org/10.1073/pnas.1422049112
    • You have access
      The massive mitochondrial genome of the angiosperm Silene noctiflora is evolving by gain or loss of entire chromosomes
      Zhiqiang Wu, Jocelyn M. Cuthbert, Douglas R. Taylor, and Daniel B. Sloan
      PNAS August 18, 2015 112 (33) 10185-10191; first published May 5, 2015. https://doi.org/10.1073/pnas.1421397112
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      Genome expansion via lineage splitting and genome reduction in the cicada endosymbiont Hodgkinia
      Matthew A. Campbell, James T. Van Leuven, Russell C. Meister, Kaitlin M. Carey, Chris Simon, and John P. McCutcheon
      PNAS August 18, 2015 112 (33) 10192-10199; first published May 18, 2015. https://doi.org/10.1073/pnas.1421386112
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      Factors mediating plastid dependency and the origins of parasitism in apicomplexans and their close relatives
      Jan Janouškovec, Denis V. Tikhonenkov, Fabien Burki, Alexis T. Howe, Martin Kolísko, Alexander P. Mylnikov, and Patrick J. Keeling
      PNAS August 18, 2015 112 (33) 10200-10207; first published February 25, 2015. https://doi.org/10.1073/pnas.1423790112
    • You have access
      Metabolic connectivity as a driver of host and endosymbiont integration
      Slim Karkar, Fabio Facchinelli, Dana C. Price, Andreas P. M. Weber, and Debashish Bhattacharya
      PNAS August 18, 2015 112 (33) 10208-10215; first published March 30, 2015. https://doi.org/10.1073/pnas.1421375112
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      Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist
      Moriya Ohkuma, Satoko Noda, Satoshi Hattori, Toshiya Iida, Masahiro Yuki, David Starns, Jun-ichi Inoue, Alistair C. Darby, and Yuichi Hongoh
      PNAS August 18, 2015 112 (33) 10224-10230; first published May 15, 2015. https://doi.org/10.1073/pnas.1423979112
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      Why chloroplasts and mitochondria retain their own genomes and genetic systems: Colocation for redox regulation of gene expression
      John F. Allen
      PNAS August 18, 2015 112 (33) 10231-10238; first published May 18, 2015. https://doi.org/10.1073/pnas.1500012112
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      Integration of plastids with their hosts: Lessons learned from dinoflagellates
      Richard G. Dorrell and Christopher J. Howe
      PNAS August 18, 2015 112 (33) 10247-10254; first published May 20, 2015. https://doi.org/10.1073/pnas.1421380112
    • You have access
      Signatures of host/symbiont genome coevolution in insect nutritional endosymbioses
      Alex C. C. Wilson and Rebecca P. Duncan
      PNAS August 18, 2015 112 (33) 10255-10261; first published May 26, 2015. https://doi.org/10.1073/pnas.1423305112
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      Evolutionary signals of symbiotic persistence in the legume–rhizobia mutualism
      Gijsbert D. A. Werner, William K. Cornwell, Johannes H. C. Cornelissen, and E. Toby Kiers
      PNAS August 18, 2015 112 (33) 10262-10269; first published June 3, 2015. https://doi.org/10.1073/pnas.1424030112
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      Endosymbiosis and its implications for evolutionary theory
      Maureen A. O’Malley
      PNAS August 18, 2015 112 (33) 10270-10277; first published April 16, 2015. https://doi.org/10.1073/pnas.1421389112
    • You have access
      Eukaryogenesis, how special really?
      Austin Booth and W. Ford Doolittle
      PNAS August 18, 2015 112 (33) 10278-10285; first published April 16, 2015. https://doi.org/10.1073/pnas.1421376112

      See companion article:

      • Eukaryotes: Being and becoming
        - Aug 17, 2015
  • Genetics

    • You have access
      Ablation of XP-V gene causes adipose tissue senescence and metabolic abnormalities
      Yih-Wen Chen, Robert A. Harris, Zafer Hatahet, and Kai-ming Chou
      PNAS August 18, 2015 112 (33) E4556-E4564; first published August 3, 2015. https://doi.org/10.1073/pnas.1506954112
    • Open Access
      Fork rotation and DNA precatenation are restricted during DNA replication to prevent chromosomal instability
      Stephanie A. Schalbetter, Sahar Mansoubi, Anna L. Chambers, Jessica A. Downs, and Jonathan Baxter
      PNAS August 18, 2015 112 (33) E4565-E4570; first published August 3, 2015. https://doi.org/10.1073/pnas.1505356112
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      Intrinsic mutagenic properties of 5-chlorocytosine: A mechanistic connection between chronic inflammation and cancer
      Bogdan I. Fedeles, Bret D. Freudenthal, Emily Yau, Vipender Singh, Shiou-chi Chang, Deyu Li, James C. Delaney, Samuel H. Wilson, and John M. Essigmann
      PNAS August 18, 2015 112 (33) E4571-E4580; first published August 4, 2015. https://doi.org/10.1073/pnas.1507709112
    • You have access
      Endothelin receptor B, a candidate gene from human studies at high altitude, improves cardiac tolerance to hypoxia in genetically engineered heterozygote mice
      • From the Cover
      Tsering Stobdan, Dan Zhou, Eilleen Ao-Ieong, Daniel Ortiz, Roy Ronen, Iain Hartley, Zhuohui Gan, Andrew D. McCulloch, Vineet Bafna, Pedro Cabrales, and Gabriel G. Haddad
      PNAS August 18, 2015 112 (33) 10425-10430; first published August 3, 2015. https://doi.org/10.1073/pnas.1507486112

      See companion article:

      • Genetic selection by high altitude
        - Aug 10, 2015
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      The genetics of human infertility by functional interrogation of SNPs in mice
      Priti Singh and John C. Schimenti
      PNAS August 18, 2015 112 (33) 10431-10436; first published August 3, 2015. https://doi.org/10.1073/pnas.1506974112
  • Immunology and Inflammation

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      RabGDIα is a negative regulator of interferon-γ–inducible GTPase-dependent cell-autonomous immunity to Toxoplasma gondii
      Jun Ohshima, Miwa Sasai, Jianfa Liu, Kazuo Yamashita, Ji Su Ma, Youngae Lee, Hironori Bando, Jonathan C. Howard, Shigeyuki Ebisu, Mikako Hayashi, Kiyoshi Takeda, Daron M. Standley, Eva-Maria Frickel, and Masahiro Yamamoto
      PNAS August 18, 2015 112 (33) E4581-E4590; first published August 3, 2015. https://doi.org/10.1073/pnas.1510031112
    • Open Access
      Generation of knock-in primary human T cells using Cas9 ribonucleoproteins
      Kathrin Schumann, Steven Lin, Eric Boyer, Dimitre R. Simeonov, Meena Subramaniam, Rachel E. Gate, Genevieve E. Haliburton, Chun J. Ye, Jeffrey A. Bluestone, Jennifer A. Doudna, and Alexander Marson
      PNAS August 18, 2015 112 (33) 10437-10442; first published July 27, 2015. https://doi.org/10.1073/pnas.1512503112
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      Roles of unphosphorylated ISGF3 in HCV infection and interferon responsiveness
      Pil Soo Sung, HyeonJoo Cheon, Chung Hwan Cho, Seon-Hui Hong, Do Youn Park, Hyung-Il Seo, Su-Hyung Park, Seung Kew Yoon, George R. Stark, and Eui-Cheol Shin
      PNAS August 18, 2015 112 (33) 10443-10448; first published July 27, 2015. https://doi.org/10.1073/pnas.1513341112
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      Ubiquitination by March-I prevents MHC class II recycling and promotes MHC class II turnover in antigen-presenting cells
      Kyung-Jin Cho, Even Walseng, Satoshi Ishido, and Paul A. Roche
      PNAS August 18, 2015 112 (33) 10449-10454; first published August 3, 2015. https://doi.org/10.1073/pnas.1507981112
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      NLRP12 provides a critical checkpoint for osteoclast differentiation
      Jennifer L. Krauss, Rong Zeng, Cynthia L. Hickman-Brecks, Justin E. Wilson, Jenny P.-Y. Ting, and Deborah V. Novack
      PNAS August 18, 2015 112 (33) 10455-10460; first published August 3, 2015. https://doi.org/10.1073/pnas.1500196112
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      MTMR3 risk allele enhances innate receptor-induced signaling and cytokines by decreasing autophagy and increasing caspase-1 activation
      Amit Lahiri, Matija Hedl, and Clara Abraham
      PNAS August 18, 2015 112 (33) 10461-10466; first published August 3, 2015. https://doi.org/10.1073/pnas.1501752112
  • Medical Sciences

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      Aldosterone-stimulating somatic gene mutations are common in normal adrenal glands
      Koshiro Nishimoto, Scott A. Tomlins, Rork Kuick, Andi K. Cani, Thomas J. Giordano, Daniel H. Hovelson, Chia-Jen Liu, Aalok R. Sanjanwala, Michael A. Edwards, Celso E. Gomez-Sanchez, Kazutaka Nanba, and William E. Rainey
      PNAS August 18, 2015 112 (33) E4591-E4599; first published August 3, 2015. https://doi.org/10.1073/pnas.1505529112
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      Chemotherapy triggers HIF-1–dependent glutathione synthesis and copper chelation that induces the breast cancer stem cell phenotype
      Haiquan Lu, Debangshu Samanta, Lisha Xiang, Huimin Zhang, Hongxia Hu, Ivan Chen, John W. Bullen, and Gregg L. Semenza
      PNAS August 18, 2015 112 (33) E4600-E4609; first published July 30, 2015. https://doi.org/10.1073/pnas.1513433112
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      Flow perfusion effects on three-dimensional culture and drug sensitivity of Ewing sarcoma
      Marco Santoro, Salah-Eddine Lamhamedi-Cherradi, Brian A. Menegaz, Joseph A. Ludwig, and Antonios G. Mikos
      PNAS August 18, 2015 112 (33) 10304-10309; first published August 3, 2015. https://doi.org/10.1073/pnas.1506684112
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      Countering antivaccination attitudes
      Zachary Horne, Derek Powell, John E. Hummel, and Keith J. Holyoak
      PNAS August 18, 2015 112 (33) 10321-10324; first published August 3, 2015. https://doi.org/10.1073/pnas.1504019112

      See companion article:

      • Vaccine attitude change: What works, what doesn't
        - Nov 23, 2015
    • Open Access
      Ancient hot and cold genes and chemotherapy resistance emergence
      Amy Wu, Qiucen Zhang, Guillaume Lambert, Zayar Khin, Robert A. Gatenby, Hyunsung John Kim, Nader Pourmand, Kimberly Bussey, Paul C. W. Davies, James C. Sturm, and Robert H. Austin
      PNAS August 18, 2015 112 (33) 10467-10472; first published August 3, 2015. https://doi.org/10.1073/pnas.1512396112
  • Microbiology

    • Open Access
      Prophylactic and postexposure efficacy of a potent human monoclonal antibody against MERS coronavirus
      • From the Cover
      Davide Corti, Jincun Zhao, Mattia Pedotti, Luca Simonelli, Sudhakar Agnihothram, Craig Fett, Blanca Fernandez-Rodriguez, Mathilde Foglierini, Gloria Agatic, Fabrizia Vanzetta, Robin Gopal, Christopher J. Langrish, Nicholas A Barrett, Federica Sallusto, Ralph S. Baric, Luca Varani, Maria Zambon, Stanley Perlman, and Antonio Lanzavecchia
      PNAS August 18, 2015 112 (33) 10473-10478; first published July 27, 2015. https://doi.org/10.1073/pnas.1510199112

      See companion article:

      • Speed antibodies to counter emerging viruses
        - Aug 10, 2015
    • Open Access
      Rhythmicity of the intestinal microbiota is regulated by gender and the host circadian clock
      Xue Liang, Frederic D. Bushman, and Garret A. FitzGerald
      PNAS August 18, 2015 112 (33) 10479-10484; first published August 3, 2015. https://doi.org/10.1073/pnas.1501305112
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      A globally distributed mobile genetic element inhibits natural transformation of Vibrio cholerae
      Ankur B. Dalia, Kimberley D. Seed, Stephen B. Calderwood, and Andrew Camilli
      PNAS August 18, 2015 112 (33) 10485-10490; first published August 3, 2015. https://doi.org/10.1073/pnas.1509097112
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      In situ proteolysis of the Vibrio cholerae matrix protein RbmA promotes biofilm recruitment
      Daniel R. Smith, Manuel Maestre-Reyna, Gloria Lee, Harry Gerard, Andrew H.-J. Wang, and Paula I. Watnick
      PNAS August 18, 2015 112 (33) 10491-10496; first published August 3, 2015. https://doi.org/10.1073/pnas.1512424112
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      Persistence of the dominant soil phylum Acidobacteria by trace gas scavenging
      Chris Greening, Carlo R. Carere, Rowena Rushton-Green, Liam K. Harold, Kiel Hards, Matthew C. Taylor, Sergio E. Morales, Matthew B. Stott, and Gregory M. Cook
      PNAS August 18, 2015 112 (33) 10497-10502; first published August 3, 2015. https://doi.org/10.1073/pnas.1508385112
  • Neuroscience

    • Open Access
      FXR1P is a GSK3β substrate regulating mood and emotion processing
      Thomas Del’Guidice, Camille Latapy, Antonio Rampino, Jivan Khlghatyan, Morgane Lemasson, Barbara Gelao, Tiziana Quarto, Giuseppe Rizzo, Annie Barbeau, Claude Lamarre, Alessandro Bertolino, Giuseppe Blasi, and Jean-Martin Beaulieu
      PNAS August 18, 2015 112 (33) E4610-E4619; first published August 3, 2015. https://doi.org/10.1073/pnas.1506491112
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      Local axonal protection by WldS as revealed by conditional regulation of protein stability
      • Inaugural Article
      Jack T. Wang, Zachary A. Medress, Mauricio E. Vargas, and Ben A. Barres
      PNAS August 18, 2015 112 (33) 10093-10100; first published July 24, 2015. https://doi.org/10.1073/pnas.1508337112

      See companion article:

      • QnAs with Ben Barres
        - Aug 03, 2015
    • Open Access
      Specific responses of human hippocampal neurons are associated with better memory
      Nanthia A. Suthana, Neelroop N. Parikshak, Arne D. Ekstrom, Matias J. Ison, Barbara J. Knowlton, Susan Y. Bookheimer, and Itzhak Fried
      PNAS August 18, 2015 112 (33) 10503-10508; first published August 3, 2015. https://doi.org/10.1073/pnas.1423036112
    • Open Access
      Astrocytes phagocytose focal dystrophies from shortening myelin segments in the optic nerve of Xenopus laevis at metamorphosis
      Elizabeth A. Mills, Chung-ha O. Davis, Eric A. Bushong, Daniela Boassa, Keun-Young Kim, Mark H. Ellisman, and Nicholas Marsh-Armstrong
      PNAS August 18, 2015 112 (33) 10509-10514; first published August 3, 2015. https://doi.org/10.1073/pnas.1506486112
    • Open Access
      In vivo imaging of axonal transport of mitochondria in the diseased and aged mammalian CNS
      Yuji Takihara, Masaru Inatani, Kei Eto, Toshihiro Inoue, Alexander Kreymerman, Seiji Miyake, Shinji Ueno, Masatoshi Nagaya, Ayami Nakanishi, Keiichiro Iwao, Yoshihiro Takamura, Hirotaka Sakamoto, Keita Satoh, Mineo Kondo, Tatsuya Sakamoto, Jeffrey L. Goldberg, Junichi Nabekura, and Hidenobu Tanihara
      PNAS August 18, 2015 112 (33) 10515-10520; first published August 3, 2015. https://doi.org/10.1073/pnas.1509879112
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      Local generation of multineuronal spike sequences in the hippocampal CA1 region
      Eran Stark, Lisa Roux, Ronny Eichler, and György Buzsáki
      PNAS August 18, 2015 112 (33) 10521-10526; first published August 3, 2015. https://doi.org/10.1073/pnas.1508785112
  • Physiology

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      Nectar vs. pollen loading affects the tradeoff between flight stability and maneuverability in bumblebees
      Andrew M. Mountcastle, Sridhar Ravi, and Stacey A. Combes
      PNAS August 18, 2015 112 (33) 10527-10532; first published August 3, 2015. https://doi.org/10.1073/pnas.1506126112
  • Plant Biology

    • Open Access
      The MYB36 transcription factor orchestrates Casparian strip formation
      Takehiro Kamiya, Monica Borghi, Peng Wang, John M. C. Danku, Lothar Kalmbach, Prashant S. Hosmani, Sadaf Naseer, Toru Fujiwara, Niko Geldner, and David E. Salt
      PNAS August 18, 2015 112 (33) 10533-10538; first published June 29, 2015. https://doi.org/10.1073/pnas.1507691112

      See companion article:

      • Controlling barrier formation
        - Aug 18, 2015
    • Open Access
      Heterochrony underpins natural variation in Cardamine hirsuta leaf form
      Maria Cartolano, Bjorn Pieper, Janne Lempe, Alex Tattersall, Peter Huijser, Achim Tresch, Peter R. Darrah, Angela Hay, and Miltos Tsiantis
      PNAS August 18, 2015 112 (33) 10539-10544; first published August 4, 2015. https://doi.org/10.1073/pnas.1419791112
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      At14a-Like1 participates in membrane-associated mechanisms promoting growth during drought in Arabidopsis thaliana
      M. Nagaraj Kumar, Yi-Fang Hsieh, and Paul E. Verslues
      PNAS August 18, 2015 112 (33) 10545-10550; first published August 3, 2015. https://doi.org/10.1073/pnas.1510140112
  • Population Biology

    • Open Access
      Complex dynamics of synergistic coinfections on realistically clustered networks
      Laurent Hébert-Dufresne and Benjamin M. Althouse
      PNAS August 18, 2015 112 (33) 10551-10556; first published July 20, 2015. https://doi.org/10.1073/pnas.1507820112
    • You have access
      Three types of rescue can avert extinction in a changing environment
      Ruth A. Hufbauer, Marianna Szűcs, Emily Kasyon, Courtney Youngberg, Michael J. Koontz, Christopher Richards, Ty Tuff, and Brett A. Melbourne
      PNAS August 18, 2015 112 (33) 10557-10562; first published August 3, 2015. https://doi.org/10.1073/pnas.1504732112

      See companion article:

      • Synthesis across experiments to achieve generality
        - Oct 19, 2015
  • Psychological and Cognitive Sciences

    • Open Access
      Perceptual transparency from image deformation
      Takahiro Kawabe, Kazushi Maruya, and Shin’ya Nishida
      PNAS August 18, 2015 112 (33) E4620-E4627; first published August 3, 2015. https://doi.org/10.1073/pnas.1500913112
    • You have access
      Self-control forecasts better psychosocial outcomes but faster epigenetic aging in low-SES youth
      • From the Cover
      Gregory E. Miller, Tianyi Yu, Edith Chen, and Gene H. Brody
      PNAS August 18, 2015 112 (33) 10325-10330; first published July 13, 2015. https://doi.org/10.1073/pnas.1505063112

      See companion article:

      • Disadvantage, self-control, and health
        - Aug 10, 2015

Corrections (Online Only)

  • You have access
    Correction for Slik et al., An estimate of the number of tropical tree species
    PNAS August 18, 2015 112 (33) E4628-E4629; first published July 10, 2015. https://doi.org/10.1073/pnas.1512611112
  • You have access
    Correction for Lock et al., Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma
    PNAS August 18, 2015 112 (33) E4630; first published July 9, 2015. https://doi.org/10.1073/pnas.1512789112
  • You have access
    Correction for Kurcon et al., miRNA proxy approach reveals hidden functions of glycosylation
    PNAS August 18, 2015 112 (33) E4631; first published July 13, 2015. https://doi.org/10.1073/pnas.1512883112

SI Correction (Online Only)

  • You have access
    Correction to Supporting Information for Kurcon et al., miRNA proxy approach reveals hidden functions of glycosylation
    PNAS August 18, 2015 112 (33) E4632-E4635; first published July 13, 2015. https://doi.org/10.1073/pnas.1512886112
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Proceedings of the National Academy of Sciences: 112 (33)
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