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Table of Contents

July 19, 2016; vol. 113 no. 29

This Week in PNAS

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    In This Issue
    PNAS July 19, 2016 113 (29) 7925-7927; https://doi.org/10.1073/iti2916113

Letters (Online Only)

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    Linear controls are not enough to account for multiplicative confound effects on air rage
    Roger Giner-Sorolla
    PNAS July 19, 2016 113 (29) E4119; first published July 12, 2016. https://doi.org/10.1073/pnas.1607914113
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    Reply to Giner-Sorolla: Relationships between inequality and air rage are robust to additional specifications
    Katherine A. DeCelles and Michael I. Norton
    PNAS July 19, 2016 113 (29) E4120; first published July 12, 2016. https://doi.org/10.1073/pnas.1608308113

    See companion article:

    • Inequality on airplanes predicts air rage
      - May 02, 2016
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    Microplastic exposure studies should be environmentally realistic
    Robin Lenz, Kristina Enders, and Torkel Gissel Nielsen
    PNAS July 19, 2016 113 (29) E4121-E4122; first published July 12, 2016. https://doi.org/10.1073/pnas.1606615113
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    Reply to Lenz et al.: Quantifying the smallest microplastics is the challenge for a comprehensive view of their environmental impacts
    Arnaud Huvet, Ika Paul-Pont, Caroline Fabioux, Christophe Lambert, Marc Suquet, Yoann Thomas, Johan Robbens, Philippe Soudant, and Rossana Sussarellu
    PNAS July 19, 2016 113 (29) E4123-E4124; first published July 12, 2016. https://doi.org/10.1073/pnas.1607221113

    See companion article:

    • Microplastics affect oyster reproduction
      - Feb 01, 2016

Science and Culture

How science intersects with culture.
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    Science and Culture: The value of a good science hack
    • Front Matter
    Stephen Ornes
    PNAS July 19, 2016 113 (29) 7928-7929; https://doi.org/10.1073/pnas.1607652113

Core Concepts

A brief introduction to emerging topics in science.
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    Core Concept: Tectonic tremors could offer insights into the big shakers
    • Front Matter
    Danielle Venton
    PNAS July 19, 2016 113 (29) 7930-7931; https://doi.org/10.1073/pnas.1610000113

Profiles

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    Profile of Martin Pollak
    Jennifer Viegas
    PNAS July 19, 2016 113 (29) 7932-7934; first published July 5, 2016. https://doi.org/10.1073/pnas.1608936113

    See companion article:

    • APOL1 cytotoxicity
      - Dec 23, 2015
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    Profile of Joachim Messing
    Brian Doctrow
    PNAS July 19, 2016 113 (29) 7935-7937; first published July 5, 2016. https://doi.org/10.1073/pnas.1608857113

    See companion article:

    • Gene copy number variation
      - Jun 27, 2016

Commentaries

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    Intracranial dissection of word reading mechanisms
    Laurent Cohen
    PNAS July 19, 2016 113 (29) 7938-7940; first published July 7, 2016. https://doi.org/10.1073/pnas.1608541113

    See companion article:

    • Temporal dynamics of left midfusiform gyrus
      - Jun 20, 2016
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    Clues to NPC1-mediated cholesterol export from lysosomes
    Suzanne R. Pfeffer
    PNAS July 19, 2016 113 (29) 7941-7943; first published July 7, 2016. https://doi.org/10.1073/pnas.1608530113

    See companion article:

    • Structure of human Niemann–Pick C1 protein
      - Jun 15, 2016
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    Harnessing shared antigens and T-cell receptors in cancer: Opportunities and challenges
    Kavita Dhodapkar and Madhav Dhodapkar
    PNAS July 19, 2016 113 (29) 7944-7945; first published July 7, 2016. https://doi.org/10.1073/pnas.1608860113

    See companion article:

    • Breast cancer patients shared TCR sequences
      - Jun 15, 2016

PNAS Plus Significance Statements

Brief statements written by the authors about the significance of their papers.
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    PNAS Plus Significance Statements
    PNAS July 19, 2016 113 (29) 7946-7948; https://doi.org/10.1073/pnas.ss11329

Arthur M. Sackler Colloquium on In the Light of Evolution X: Comparative Phylogeography (Free Online)

  • Introduction

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      In the light of evolution X: Comparative phylogeography
      • From the Cover
      John C. Avise, Brian W. Bowen, and Francisco J. Ayala
      PNAS July 19, 2016 113 (29) 7957-7961; first published July 18, 2016. https://doi.org/10.1073/pnas.1604338113
  • Colloquium Papers

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      Comparative phylogeography of the ocean planet
      Brian W. Bowen, Michelle R. Gaither, Joseph D. DiBattista, Matthew Iacchei, Kimberly R. Andrews, W. Stewart Grant, Robert J. Toonen, and John C. Briggs
      PNAS July 19, 2016 113 (29) 7962-7969; first published July 18, 2016. https://doi.org/10.1073/pnas.1602404113
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      Comparative phylogeography clarifies the complexity and problems of continental distribution that drove A. R. Wallace to favor islands
      Brett R. Riddle
      PNAS July 19, 2016 113 (29) 7970-7977; first published July 18, 2016. https://doi.org/10.1073/pnas.1601072113
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      Inferring responses to climate dynamics from historical demography in neotropical forest lizards
      Ivan Prates, Alexander T. Xue, Jason L. Brown, Diego F. Alvarado-Serrano, Miguel T. Rodrigues, Michael J. Hickerson, and Ana C. Carnaval
      PNAS July 19, 2016 113 (29) 7978-7985; first published July 18, 2016. https://doi.org/10.1073/pnas.1601063113
    • You have access
      Comparative phylogeography of oceanic archipelagos: Hotspots for inferences of evolutionary process
      Kerry L. Shaw and Rosemary G. Gillespie
      PNAS July 19, 2016 113 (29) 7986-7993; first published July 18, 2016. https://doi.org/10.1073/pnas.1601078113
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      Effects of the population pedigree on genetic signatures of historical demographic events
      John Wakeley, Léandra King, and Peter R. Wilton
      PNAS July 19, 2016 113 (29) 7994-8001; first published July 18, 2016. https://doi.org/10.1073/pnas.1601080113
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      The probability of monophyly of a sample of gene lineages on a species tree
      Rohan S. Mehta, David Bryant, and Noah A. Rosenberg
      PNAS July 19, 2016 113 (29) 8002-8009; first published July 18, 2016. https://doi.org/10.1073/pnas.1601074113
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      Phylogeographic model selection leads to insight into the evolutionary history of four-eyed frogs
      Maria Tereza C. Thomé and Bryan C. Carstens
      PNAS July 19, 2016 113 (29) 8010-8017; first published July 18, 2016. https://doi.org/10.1073/pnas.1601064113
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      Toward a paradigm shift in comparative phylogeography driven by trait-based hypotheses
      Anna Papadopoulou and L. Lacey Knowles
      PNAS July 19, 2016 113 (29) 8018-8024; first published July 18, 2016. https://doi.org/10.1073/pnas.1601069113
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      Reticulation, divergence, and the phylogeography–phylogenetics continuum
      Scott V. Edwards, Sally Potter, C. Jonathan Schmitt, Jason G. Bragg, and Craig Moritz
      PNAS July 19, 2016 113 (29) 8025-8032; first published July 18, 2016. https://doi.org/10.1073/pnas.1601066113
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      Global biogeography of microbial nitrogen-cycling traits in soil
      Michaeline B. Nelson, Adam C. Martiny, and Jennifer B. H. Martiny
      PNAS July 19, 2016 113 (29) 8033-8040; first published July 18, 2016. https://doi.org/10.1073/pnas.1601070113
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      Phenotypes in phylogeography: Species’ traits, environmental variation, and vertebrate diversification
      Kelly R. Zamudio, Rayna C. Bell, and Nicholas A. Mason
      PNAS July 19, 2016 113 (29) 8041-8048; first published July 18, 2016. https://doi.org/10.1073/pnas.1602237113
    • You have access
      Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar's forests past
      Anne D. Yoder, C. Ryan Campbell, Marina B. Blanco, Mario dos Reis, Jörg U. Ganzhorn, Steven M. Goodman, Kelsie E. Hunnicutt, Peter A. Larsen, Peter M. Kappeler, Rodin M. Rasoloarison, José M. Ralison, David L. Swofford, and David W. Weisrock
      PNAS July 19, 2016 113 (29) 8049-8056; first published July 18, 2016. https://doi.org/10.1073/pnas.1601081113
    • You have access
      Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada
      Peter D. Heintzman, Duane Froese, John W. Ives, André E. R. Soares, Grant D. Zazula, Brandon Letts, Thomas D. Andrews, Jonathan C. Driver, Elizabeth Hall, P. Gregory Hare, Christopher N. Jass, Glen MacKay, John R. Southon, Mathias Stiller, Robin Woywitka, Marc A. Suchard, and Beth Shapiro
      PNAS July 19, 2016 113 (29) 8057-8063; first published June 6, 2016. https://doi.org/10.1073/pnas.1601077113
    • You have access
      Evolutionary lessons from California plant phylogeography
      Victoria L. Sork, Paul F. Gugger, Jin-Ming Chen, and Silke Werth
      PNAS July 19, 2016 113 (29) 8064-8071; first published July 18, 2016. https://doi.org/10.1073/pnas.1602675113
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      Human phylogeography and diversity
      Alexander H. Harcourt
      PNAS July 19, 2016 113 (29) 8072-8078; first published July 18, 2016. https://doi.org/10.1073/pnas.1601068113
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      Union of phylogeography and landscape genetics
      Leslie J. Rissler
      PNAS July 19, 2016 113 (29) 8079-8086; first published July 18, 2016. https://doi.org/10.1073/pnas.1601073113

Physical Sciences

  • Applied Physical Sciences

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      Spontaneous wettability patterning via creasing instability
      Dayong Chen, Gareth H. McKinley, and Robert E. Cohen
      PNAS July 19, 2016 113 (29) 8087-8092; first published July 5, 2016. https://doi.org/10.1073/pnas.1522700113
    • You have access
      High-resolution X-ray absorption spectroscopy as a probe of crystal-field and covalency effects in actinide compounds
      Sergei M. Butorin, Kristina O. Kvashnina, Johan R. Vegelius, Daniel Meyer, and David K. Shuh
      PNAS July 19, 2016 113 (29) 8093-8097; first published July 1, 2016. https://doi.org/10.1073/pnas.1601741113
  • Chemistry

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      pH-degradable imidazoquinoline-ligated nanogels for lymph node-focused immune activation
      Lutz Nuhn, Nane Vanparijs, Ans De Beuckelaer, Lien Lybaert, Glenn Verstraete, Kim Deswarte, Stefan Lienenklaus, Nikunj M. Shukla, Alex C. D. Salyer, Bart N. Lambrecht, Johan Grooten, Sunil A. David, Stefaan De Koker, and Bruno G. De Geest
      PNAS July 19, 2016 113 (29) 8098-8103; first published July 5, 2016. https://doi.org/10.1073/pnas.1600816113
    • You have access
      Measurements of extinct fission products in nuclear bomb debris: Determination of the yield of the Trinity nuclear test 70 y later
      Susan K. Hanson, Anthony D. Pollington, Christopher R. Waidmann, William S. Kinman, Allison M. Wende, Jeffrey L. Miller, Jennifer A. Berger, Warren J. Oldham, and Hugh D. Selby
      PNAS July 19, 2016 113 (29) 8104-8108; first published July 5, 2016. https://doi.org/10.1073/pnas.1602792113
    • You have access
      Stereoisomerism, crystal structures, and dynamics of belt-shaped cyclonaphthylenes
      Zhe Sun, Takuya Suenaga, Parantap Sarkar, Sota Sato, Motoko Kotani, and Hiroyuki Isobe
      PNAS July 19, 2016 113 (29) 8109-8114; first published June 29, 2016. https://doi.org/10.1073/pnas.1606530113
    • You have access
      Dexter energy transfer pathways
      Spiros S. Skourtis, Chaoren Liu, Panayiotis Antoniou, Aaron M. Virshup, and David N. Beratan
      PNAS July 19, 2016 113 (29) 8115-8120; first published July 5, 2016. https://doi.org/10.1073/pnas.1517189113
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      Cytosine deamination and the precipitous decline of spontaneous mutation during Earth's history
      Charles A. Lewis Jr., Jesse Crayle, Shuntai Zhou, Ronald Swanstrom, and Richard Wolfenden
      PNAS July 19, 2016 113 (29) 8194-8199; first published July 5, 2016. https://doi.org/10.1073/pnas.1607580113
  • Earth, Atmospheric, and Planetary Sciences

    • Open Access
      Polymorphism and electronic structure of polyimine and its potential significance for prebiotic chemistry on Titan
      Martin Rahm, Jonathan I. Lunine, David A. Usher, and David Shalloway
      PNAS July 19, 2016 113 (29) 8121-8126; first published July 5, 2016. https://doi.org/10.1073/pnas.1606634113
    • Open Access
      Quantifying the origins of life on a planetary scale
      Caleb Scharf and Leroy Cronin
      PNAS July 19, 2016 113 (29) 8127-8132; first published July 5, 2016. https://doi.org/10.1073/pnas.1523233113
  • Engineering

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      Dendrimer-RNA nanoparticles generate protective immunity against lethal Ebola, H1N1 influenza, and Toxoplasma gondii challenges with a single dose
      Jasdave S. Chahal, Omar F. Khan, Christopher L. Cooper, Justine S. McPartlan, Jonathan K. Tsosie, Lucas D. Tilley, Saima M. Sidik, Sebastian Lourido, Robert Langer, Sina Bavari, Hidde L. Ploegh, and Daniel G. Anderson
      PNAS July 19, 2016 113 (29) E4133-E4142; first published July 5, 2016. https://doi.org/10.1073/pnas.1600299113
  • Physics

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      Higher thermoelectric performance of Zintl phases (Eu0.5Yb0.5)1−xCaxMg2Bi2 by band engineering and strain fluctuation
      Jing Shuai, Huiyuan Geng, Yucheng Lan, Zhuan Zhu, Chao Wang, Zihang Liu, Jiming Bao, Ching-Wu Chu, Jiehe Sui, and Zhifeng Ren
      PNAS July 19, 2016 113 (29) E4125-E4132; first published July 6, 2016. https://doi.org/10.1073/pnas.1608794113
    • Open Access
      Cellular heterogeneity mediates inherent sensitivity–specificity tradeoff in cancer targeting by synthetic circuits
      Mathieu Morel, Roman Shtrahman, Varda Rotter, Lior Nissim, and Roy H. Bar-Ziv
      PNAS July 19, 2016 113 (29) 8133-8138; first published July 6, 2016. https://doi.org/10.1073/pnas.1604391113
    • You have access
      Nematic quantum critical point without magnetism in FeSe1−xSx superconductors
      Suguru Hosoi, Kohei Matsuura, Kousuke Ishida, Hao Wang, Yuta Mizukami, Tatsuya Watashige, Shigeru Kasahara, Yuji Matsuda, and Takasada Shibauchi
      PNAS July 19, 2016 113 (29) 8139-8143; first published July 5, 2016. https://doi.org/10.1073/pnas.1605806113
    • Open Access
      Mapping out spin and particle conductances in a quantum point contact
      Sebastian Krinner, Martin Lebrat, Dominik Husmann, Charles Grenier, Jean-Philippe Brantut, and Tilman Esslinger
      PNAS July 19, 2016 113 (29) 8144-8149; first published June 29, 2016. https://doi.org/10.1073/pnas.1601812113
    • You have access
      Stochastic cycle selection in active flow networks
      Francis G. Woodhouse, Aden Forrow, Joanna B. Fawcett, and Jörn Dunkel
      PNAS July 19, 2016 113 (29) 8200-8205; first published July 5, 2016. https://doi.org/10.1073/pnas.1603351113
    • Open Access
      Spectral discrimination in color blind animals via chromatic aberration and pupil shape
      Alexander L. Stubbs and Christopher W. Stubbs
      PNAS July 19, 2016 113 (29) 8206-8211; first published July 5, 2016. https://doi.org/10.1073/pnas.1524578113

      See companion article:

      • All color vision is more difficult in turbid water
        - Nov 01, 2016

Social Sciences

  • Anthropology

    • You have access
      Cook Island artifact geochemistry demonstrates spatial and temporal extent of pre-European interarchipelago voyaging in East Polynesia
      Marshall I. Weisler, Robert Bolhar, Jinlong Ma, Emma St Pierre, Peter Sheppard, Richard K. Walter, Yuexing Feng, Jian-xin Zhao, and Patrick V. Kirch
      PNAS July 19, 2016 113 (29) 8150-8155; first published July 5, 2016. https://doi.org/10.1073/pnas.1608130113
    • You have access
      Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada
      Peter D. Heintzman, Duane Froese, John W. Ives, André E. R. Soares, Grant D. Zazula, Brandon Letts, Thomas D. Andrews, Jonathan C. Driver, Elizabeth Hall, P. Gregory Hare, Christopher N. Jass, Glen MacKay, John R. Southon, Mathias Stiller, Robin Woywitka, Marc A. Suchard, and Beth Shapiro
      PNAS July 19, 2016 113 (29) 8057-8063; first published June 6, 2016. https://doi.org/10.1073/pnas.1601077113
    • You have access
      Psychological resilience and the gene regulatory impact of posttraumatic stress in Nepali child soldiers
      Brandon A. Kohrt, Carol M. Worthman, Ramesh P. Adhikari, Nagendra P. Luitel, Jesusa M. G. Arevalo, Jeffrey Ma, Heather McCreath, Teresa E. Seeman, Eileen M. Crimmins, and Steven W. Cole
      PNAS July 19, 2016 113 (29) 8156-8161; first published July 11, 2016. https://doi.org/10.1073/pnas.1601301113
  • Psychological and Cognitive Sciences

    • Open Access
      Decoding and disrupting left midfusiform gyrus activity during word reading
      Elizabeth A. Hirshorn, Yuanning Li, Michael J. Ward, R. Mark Richardson, Julie A. Fiez, and Avniel Singh Ghuman
      PNAS July 19, 2016 113 (29) 8162-8167; first published June 20, 2016. https://doi.org/10.1073/pnas.1604126113

      See companion article:

      • Intracranial dissection of word reading mechanisms
        - Jul 07, 2016
    • You have access
      Blood sugar level follows perceived time rather than actual time in people with type 2 diabetes
      Chanmo Park, Francesco Pagnini, Andrew Reece, Deborah Phillips, and Ellen Langer
      PNAS July 19, 2016 113 (29) 8168-8170; first published July 5, 2016. https://doi.org/10.1073/pnas.1603444113
    • Open Access
      Mnemonic convergence in social networks: The emergent properties of cognition at a collective level
      Alin Coman, Ida Momennejad, Rae D. Drach, and Andra Geana
      PNAS July 19, 2016 113 (29) 8171-8176; first published June 29, 2016. https://doi.org/10.1073/pnas.1525569113

Biological Sciences

  • Agricultural Sciences

    • Open Access
      Analysis of tandem gene copies in maize chromosomal regions reconstructed from long sequence reads
      • Inaugural Article
      Jiaqiang Dong, Yaping Feng, Dibyendu Kumar, Wei Zhang, Tingting Zhu, Ming-Cheng Luo, and Joachim Messing
      PNAS July 19, 2016 113 (29) 7949-7956; first published June 27, 2016. https://doi.org/10.1073/pnas.1608775113

      See companion article:

      • Profile of Joachim Messing
        - Jul 05, 2016
  • Anthropology

    • You have access
      Human phylogeography and diversity
      Alexander H. Harcourt
      PNAS July 19, 2016 113 (29) 8072-8078; first published July 18, 2016. https://doi.org/10.1073/pnas.1601068113
  • Applied Biological Sciences

    • You have access
      Dendrimer-RNA nanoparticles generate protective immunity against lethal Ebola, H1N1 influenza, and Toxoplasma gondii challenges with a single dose
      Jasdave S. Chahal, Omar F. Khan, Christopher L. Cooper, Justine S. McPartlan, Jonathan K. Tsosie, Lucas D. Tilley, Saima M. Sidik, Sebastian Lourido, Robert Langer, Sina Bavari, Hidde L. Ploegh, and Daniel G. Anderson
      PNAS July 19, 2016 113 (29) E4133-E4142; first published July 5, 2016. https://doi.org/10.1073/pnas.1600299113
    • You have access
      In situ characterization of the mTORC1 during adipogenesis of human adult stem cells on chip
      Xuanye Wu, Nils Schneider, Alina Platen, Indranil Mitra, Matthias Blazek, Roland Zengerle, Roland Schüle, and Matthias Meier
      PNAS July 19, 2016 113 (29) E4143-E4150; first published July 5, 2016. https://doi.org/10.1073/pnas.1601207113
    • Open Access
      Probe for the measurement of cell surface pH in vivo and ex vivo
      Michael Anderson, Anna Moshnikova, Donald M. Engelman, Yana K. Reshetnyak, and Oleg A. Andreev
      PNAS July 19, 2016 113 (29) 8177-8181; first published July 5, 2016. https://doi.org/10.1073/pnas.1608247113
  • Biochemistry

    • You have access
      Structure and function of the yeast listerin (Ltn1) conserved N-terminal domain in binding to stalled 60S ribosomal subunits
      Selom K. Doamekpor, Joong-Won Lee, Nathaniel L. Hepowit, Cheng Wu, Clement Charenton, Marilyn Leonard, Mario H. Bengtson, Kanagalaghatta R. Rajashankar, Matthew S. Sachs, Christopher D. Lima, and Claudio A. P. Joazeiro
      PNAS July 19, 2016 113 (29) E4151-E4160; first published July 6, 2016. https://doi.org/10.1073/pnas.1605951113
    • You have access
      Assignment of function to a domain of unknown function: DUF1537 is a new kinase family in catabolic pathways for acid sugars
      Xinshuai Zhang, Michael S. Carter, Matthew W. Vetting, Brian San Francisco, Suwen Zhao, Nawar F. Al-Obaidi, Jose O. Solbiati, Jennifer J. Thiaville, Valérie de Crécy-Lagard, Matthew P. Jacobson, Steven C. Almo, and John A. Gerlt
      PNAS July 19, 2016 113 (29) E4161-E4169; first published July 11, 2016. https://doi.org/10.1073/pnas.1605546113
    • Open Access
      Insulin induction of SREBP-1c in rodent liver requires LXRα-C/EBPβ complex
      Jing Tian, Joseph L. Goldstein, and Michael S. Brown
      PNAS July 19, 2016 113 (29) 8182-8187; first published July 5, 2016. https://doi.org/10.1073/pnas.1608987113
    • Open Access
      Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors
      Alexis I. Cocozaki, Roger B. Altman, Jian Huang, Ed T. Buurman, Steven L. Kazmirski, Peter Doig, D. Bryan Prince, Scott C. Blanchard, Jamie H. D. Cate, and Andrew D. Ferguson
      PNAS July 19, 2016 113 (29) 8188-8193; first published July 5, 2016. https://doi.org/10.1073/pnas.1605127113
  • Biophysics and Computational Biology

    • You have access
      Structural basis for sulfation-dependent self-glycan recognition by the human immune-inhibitory receptor Siglec-8
      Johannes M. Pröpster, Fan Yang, Said Rabbani, Beat Ernst, Frédéric H.-T. Allain, and Mario Schubert
      PNAS July 19, 2016 113 (29) E4170-E4179; first published June 29, 2016. https://doi.org/10.1073/pnas.1602214113
    • You have access
      Generalized nucleation and looping model for epigenetic memory of histone modifications
      Fabian Erdel and Eric C. Greene
      PNAS July 19, 2016 113 (29) E4180-E4189; first published July 5, 2016. https://doi.org/10.1073/pnas.1605862113
    • You have access
      Unfolding the mechanism of the AAA+ unfoldase VAT by a combined cryo-EM, solution NMR study
      Rui Huang, Zev A. Ripstein, Rafal Augustyniak, Michal Lazniewski, Krzysztof Ginalski, Lewis E. Kay, and John L. Rubinstein
      PNAS July 19, 2016 113 (29) E4190-E4199; first published July 11, 2016. https://doi.org/10.1073/pnas.1603980113
    • Open Access
      Cellular heterogeneity mediates inherent sensitivity–specificity tradeoff in cancer targeting by synthetic circuits
      Mathieu Morel, Roman Shtrahman, Varda Rotter, Lior Nissim, and Roy H. Bar-Ziv
      PNAS July 19, 2016 113 (29) 8133-8138; first published July 6, 2016. https://doi.org/10.1073/pnas.1604391113
    • You have access
      Cytosine deamination and the precipitous decline of spontaneous mutation during Earth's history
      Charles A. Lewis Jr., Jesse Crayle, Shuntai Zhou, Ronald Swanstrom, and Richard Wolfenden
      PNAS July 19, 2016 113 (29) 8194-8199; first published July 5, 2016. https://doi.org/10.1073/pnas.1607580113
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      Stochastic cycle selection in active flow networks
      Francis G. Woodhouse, Aden Forrow, Joanna B. Fawcett, and Jörn Dunkel
      PNAS July 19, 2016 113 (29) 8200-8205; first published July 5, 2016. https://doi.org/10.1073/pnas.1603351113
    • Open Access
      Spectral discrimination in color blind animals via chromatic aberration and pupil shape
      Alexander L. Stubbs and Christopher W. Stubbs
      PNAS July 19, 2016 113 (29) 8206-8211; first published July 5, 2016. https://doi.org/10.1073/pnas.1524578113

      See companion article:

      • All color vision is more difficult in turbid water
        - Nov 01, 2016
    • Open Access
      Structure of human Niemann–Pick C1 protein
      • From the Cover
      Xiaochun Li, Jiawei Wang, Elias Coutavas, Hang Shi, Qi Hao, and Günter Blobel
      PNAS July 19, 2016 113 (29) 8212-8217; first published June 15, 2016. https://doi.org/10.1073/pnas.1607795113

      See companion article:

      • NPC1 structure revealed
        - Jul 07, 2016
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      Phosphotyrosine-mediated LAT assembly on membranes drives kinetic bifurcation in recruitment dynamics of the Ras activator SOS
      William Y. C. Huang, Qingrong Yan, Wan-Chen Lin, Jean K. Chung, Scott D. Hansen, Sune M. Christensen, Hsiung-Lin Tu, John Kuriyan, and Jay T. Groves
      PNAS July 19, 2016 113 (29) 8218-8223; first published July 1, 2016. https://doi.org/10.1073/pnas.1602602113
    • You have access
      Dynamics and architecture of the NRBF2-containing phosphatidylinositol 3-kinase complex I of autophagy
      Lindsey N. Young, Kelvin Cho, Rosalie Lawrence, Roberto Zoncu, and James H. Hurley
      PNAS July 19, 2016 113 (29) 8224-8229; first published July 6, 2016. https://doi.org/10.1073/pnas.1603650113
    • Open Access
      Dimer interface of bovine cytochrome c oxidase is influenced by local posttranslational modifications and lipid binding
      Idlir Liko, Matteo T. Degiacomi, Shabaz Mohammed, Shinya Yoshikawa, Carla Schmidt, and Carol V. Robinson
      PNAS July 19, 2016 113 (29) 8230-8235; first published June 30, 2016. https://doi.org/10.1073/pnas.1600354113
  • Cell Biology

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      DNA binding triggers tetramerization of the glucocorticoid receptor in live cells
      Diego M. Presman, Sourav Ganguly, R. Louis Schiltz, Thomas A. Johnson, Tatiana S. Karpova, and Gordon L. Hager
      PNAS July 19, 2016 113 (29) 8236-8241; first published July 5, 2016. https://doi.org/10.1073/pnas.1606774113
  • Developmental Biology

    • Open Access
      Epithelial Notch signaling regulates lung alveolar morphogenesis and airway epithelial integrity
      Po-Nien Tsao, Chisa Matsuoka, Shu-Chen Wei, Atsuyasu Sato, Susumu Sato, Koichi Hasegawa, Hung-kuan Chen, Thai-Yen Ling, Munemasa Mori, Wellington V. Cardoso, and Mitsuru Morimoto
      PNAS July 19, 2016 113 (29) 8242-8247; first published June 30, 2016. https://doi.org/10.1073/pnas.1511236113
  • Ecology

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      Global biogeography of microbial nitrogen-cycling traits in soil
      Michaeline B. Nelson, Adam C. Martiny, and Jennifer B. H. Martiny
      PNAS July 19, 2016 113 (29) 8033-8040; first published July 18, 2016. https://doi.org/10.1073/pnas.1601070113
    • You have access
      Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada
      Peter D. Heintzman, Duane Froese, John W. Ives, André E. R. Soares, Grant D. Zazula, Brandon Letts, Thomas D. Andrews, Jonathan C. Driver, Elizabeth Hall, P. Gregory Hare, Christopher N. Jass, Glen MacKay, John R. Southon, Mathias Stiller, Robin Woywitka, Marc A. Suchard, and Beth Shapiro
      PNAS July 19, 2016 113 (29) 8057-8063; first published June 6, 2016. https://doi.org/10.1073/pnas.1601077113
    • You have access
      Large scale, synchronous variability of marine fish populations driven by commercial exploitation
      Kenneth T. Frank, Brian Petrie, William C. Leggett, and Daniel G. Boyce
      PNAS July 19, 2016 113 (29) 8248-8253; first published July 5, 2016. https://doi.org/10.1073/pnas.1602325113
  • Evolution

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      Neighboring genes for DNA-binding proteins rescue male sterility in Drosophila hybrids
      Marjorie A. Liénard, Luciana O. Araripe, and Daniel L. Hartl
      PNAS July 19, 2016 113 (29) E4200-E4207; first published June 29, 2016. https://doi.org/10.1073/pnas.1608337113
    • You have access
      Comparative phylogeography of the ocean planet
      Brian W. Bowen, Michelle R. Gaither, Joseph D. DiBattista, Matthew Iacchei, Kimberly R. Andrews, W. Stewart Grant, Robert J. Toonen, and John C. Briggs
      PNAS July 19, 2016 113 (29) 7962-7969; first published July 18, 2016. https://doi.org/10.1073/pnas.1602404113
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      Comparative phylogeography clarifies the complexity and problems of continental distribution that drove A. R. Wallace to favor islands
      Brett R. Riddle
      PNAS July 19, 2016 113 (29) 7970-7977; first published July 18, 2016. https://doi.org/10.1073/pnas.1601072113
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      Inferring responses to climate dynamics from historical demography in neotropical forest lizards
      Ivan Prates, Alexander T. Xue, Jason L. Brown, Diego F. Alvarado-Serrano, Miguel T. Rodrigues, Michael J. Hickerson, and Ana C. Carnaval
      PNAS July 19, 2016 113 (29) 7978-7985; first published July 18, 2016. https://doi.org/10.1073/pnas.1601063113
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      Comparative phylogeography of oceanic archipelagos: Hotspots for inferences of evolutionary process
      Kerry L. Shaw and Rosemary G. Gillespie
      PNAS July 19, 2016 113 (29) 7986-7993; first published July 18, 2016. https://doi.org/10.1073/pnas.1601078113
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      Effects of the population pedigree on genetic signatures of historical demographic events
      John Wakeley, Léandra King, and Peter R. Wilton
      PNAS July 19, 2016 113 (29) 7994-8001; first published July 18, 2016. https://doi.org/10.1073/pnas.1601080113
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      The probability of monophyly of a sample of gene lineages on a species tree
      Rohan S. Mehta, David Bryant, and Noah A. Rosenberg
      PNAS July 19, 2016 113 (29) 8002-8009; first published July 18, 2016. https://doi.org/10.1073/pnas.1601074113
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      Phylogeographic model selection leads to insight into the evolutionary history of four-eyed frogs
      Maria Tereza C. Thomé and Bryan C. Carstens
      PNAS July 19, 2016 113 (29) 8010-8017; first published July 18, 2016. https://doi.org/10.1073/pnas.1601064113
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      Toward a paradigm shift in comparative phylogeography driven by trait-based hypotheses
      Anna Papadopoulou and L. Lacey Knowles
      PNAS July 19, 2016 113 (29) 8018-8024; first published July 18, 2016. https://doi.org/10.1073/pnas.1601069113
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      Reticulation, divergence, and the phylogeography–phylogenetics continuum
      Scott V. Edwards, Sally Potter, C. Jonathan Schmitt, Jason G. Bragg, and Craig Moritz
      PNAS July 19, 2016 113 (29) 8025-8032; first published July 18, 2016. https://doi.org/10.1073/pnas.1601066113
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      Phenotypes in phylogeography: Species’ traits, environmental variation, and vertebrate diversification
      Kelly R. Zamudio, Rayna C. Bell, and Nicholas A. Mason
      PNAS July 19, 2016 113 (29) 8041-8048; first published July 18, 2016. https://doi.org/10.1073/pnas.1602237113
    • You have access
      Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar's forests past
      Anne D. Yoder, C. Ryan Campbell, Marina B. Blanco, Mario dos Reis, Jörg U. Ganzhorn, Steven M. Goodman, Kelsie E. Hunnicutt, Peter A. Larsen, Peter M. Kappeler, Rodin M. Rasoloarison, José M. Ralison, David L. Swofford, and David W. Weisrock
      PNAS July 19, 2016 113 (29) 8049-8056; first published July 18, 2016. https://doi.org/10.1073/pnas.1601081113
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      Evolutionary lessons from California plant phylogeography
      Victoria L. Sork, Paul F. Gugger, Jin-Ming Chen, and Silke Werth
      PNAS July 19, 2016 113 (29) 8064-8071; first published July 18, 2016. https://doi.org/10.1073/pnas.1602675113
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      Union of phylogeography and landscape genetics
      Leslie J. Rissler
      PNAS July 19, 2016 113 (29) 8079-8086; first published July 18, 2016. https://doi.org/10.1073/pnas.1601073113
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      Sympatric speciation of spiny mice, Acomys, unfolded transcriptomically at Evolution Canyon, Israel
      Kexin Li, Huihua Wang, Zhenyuan Cai, Liuyang Wang, Qinqin Xu, Matěj Lövy, Zhenlong Wang, and Eviatar Nevo
      PNAS July 19, 2016 113 (29) 8254-8259; first published July 1, 2016. https://doi.org/10.1073/pnas.1608743113
    • Open Access
      Source–sink plasmid transfer dynamics maintain gene mobility in soil bacterial communities
      James P. J. Hall, A. Jamie Wood, Ellie Harrison, and Michael A. Brockhurst
      PNAS July 19, 2016 113 (29) 8260-8265; first published July 6, 2016. https://doi.org/10.1073/pnas.1600974113
    • Open Access
      Temperate phages both mediate and drive adaptive evolution in pathogen biofilms
      Emily V. Davies, Chloe E. James, David Williams, Siobhan O’Brien, Joanne L. Fothergill, Sam Haldenby, Steve Paterson, Craig Winstanley, and Michael A. Brockhurst
      PNAS July 19, 2016 113 (29) 8266-8271; first published July 5, 2016. https://doi.org/10.1073/pnas.1520056113
  • Immunology and Inflammation

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      pH-degradable imidazoquinoline-ligated nanogels for lymph node-focused immune activation
      Lutz Nuhn, Nane Vanparijs, Ans De Beuckelaer, Lien Lybaert, Glenn Verstraete, Kim Deswarte, Stefan Lienenklaus, Nikunj M. Shukla, Alex C. D. Salyer, Bart N. Lambrecht, Johan Grooten, Sunil A. David, Stefaan De Koker, and Bruno G. De Geest
      PNAS July 19, 2016 113 (29) 8098-8103; first published July 5, 2016. https://doi.org/10.1073/pnas.1600816113
    • Open Access
      Identification of shared TCR sequences from T cells in human breast cancer using emulsion RT-PCR
      • From the Cover
      Daniel J. Munson, Colt A. Egelston, Kami E. Chiotti, Zuly E. Parra, Tullia C. Bruno, Brandon L. Moore, Taizo A. Nakano, Diana L. Simons, Grecia Jimenez, John H. Yim, Dmitri V. Rozanov, Michael T. Falta, Andrew P. Fontenot, Paul R. Reynolds, Sonia M. Leach, Virginia F. Borges, John W. Kappler, Paul T. Spellman, Peter P. Lee, and Jill E. Slansky
      PNAS July 19, 2016 113 (29) 8272-8277; first published June 15, 2016. https://doi.org/10.1073/pnas.1606994113

      See companion article:

      • Shared antigens in cancer immunotherapy
        - Jul 07, 2016
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      CCR7 expression alters memory CD8 T-cell homeostasis by regulating occupancy in IL-7– and IL-15–dependent niches
      Yong Woo Jung, Hyun Gyung Kim, Curtis J. Perry, and Susan M. Kaech
      PNAS July 19, 2016 113 (29) 8278-8283; first published July 6, 2016. https://doi.org/10.1073/pnas.1602899113
    • Open Access
      Vagus nerve stimulation inhibits cytokine production and attenuates disease severity in rheumatoid arthritis
      Frieda A. Koopman, Sangeeta S. Chavan, Sanda Miljko, Simeon Grazio, Sekib Sokolovic, P. Richard Schuurman, Ashesh D. Mehta, Yaakov A. Levine, Michael Faltys, Ralph Zitnik, Kevin J. Tracey, and Paul P. Tak
      PNAS July 19, 2016 113 (29) 8284-8289; first published July 5, 2016. https://doi.org/10.1073/pnas.1605635113
  • Medical Sciences

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      Ascorbate attenuates pulmonary emphysema by inhibiting tobacco smoke and Rtp801-triggered lung protein modification and proteolysis
      Indranil Gupta, Souradipta Ganguly, Christine R. Rozanas, Dennis J. Stuehr, and Koustubh Panda
      PNAS July 19, 2016 113 (29) E4208-E4217; first published July 5, 2016. https://doi.org/10.1073/pnas.1600056113
    • Open Access
      Sleeping Beauty screen reveals Pparg activation in metastatic prostate cancer
      Imran Ahmad, Ernest Mui, Laura Galbraith, Rachana Patel, Ee Hong Tan, Mark Salji, Alistair G. Rust, Peter Repiscak, Ann Hedley, Elke Markert, Carolyn Loveridge, Louise van der Weyden, Joanne Edwards, Owen J. Sansom, David J. Adams, and Hing Y. Leung
      PNAS July 19, 2016 113 (29) 8290-8295; first published June 29, 2016. https://doi.org/10.1073/pnas.1601571113
  • Microbiology

    • Open Access
      piRNA pathway is not required for antiviral defense in Drosophila melanogaster
      Marine Petit, Vanesa Mongelli, Lionel Frangeul, Hervé Blanc, Francis Jiggins, and Maria-Carla Saleh
      PNAS July 19, 2016 113 (29) E4218-E4227; first published June 29, 2016. https://doi.org/10.1073/pnas.1607952113
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      Deletion of a dehydratase important for intracellular growth and cording renders rough Mycobacterium abscessus avirulent
      Iman Halloum, Séverine Carrère-Kremer, Mickael Blaise, Albertus Viljoen, Audrey Bernut, Vincent Le Moigne, Catherine Vilchèze, Yann Guérardel, Georges Lutfalla, Jean-Louis Herrmann, William R. Jacobs Jr., and Laurent Kremer
      PNAS July 19, 2016 113 (29) E4228-E4237; first published July 6, 2016. https://doi.org/10.1073/pnas.1605477113
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      Interbacterial signaling via Burkholderia contact-dependent growth inhibition system proteins
      • From the Cover
      Erin C. Garcia, Andrew I. Perault, Sara A. Marlatt, and Peggy A. Cotter
      PNAS July 19, 2016 113 (29) 8296-8301; first published June 22, 2016. https://doi.org/10.1073/pnas.1606323113

      See companion article:

      • Interactions between bacteria and their responses
        - Jul 15, 2016
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      Temporal and intrinsic factors of rifampicin tolerance in mycobacteria
      Kirill Richardson, Owen T. Bennion, Shumin Tan, Anh N. Hoang, Murat Cokol, and Bree B. Aldridge
      PNAS July 19, 2016 113 (29) 8302-8307; first published June 29, 2016. https://doi.org/10.1073/pnas.1600372113
  • Neuroscience

    • Open Access
      Decoding and disrupting left midfusiform gyrus activity during word reading
      Elizabeth A. Hirshorn, Yuanning Li, Michael J. Ward, R. Mark Richardson, Julie A. Fiez, and Avniel Singh Ghuman
      PNAS July 19, 2016 113 (29) 8162-8167; first published June 20, 2016. https://doi.org/10.1073/pnas.1604126113

      See companion article:

      • Intracranial dissection of word reading mechanisms
        - Jul 07, 2016
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      Early multisensory integration of self and source motion in the auditory system
      Eyal Wigderson, Israel Nelken, and Yosef Yarom
      PNAS July 19, 2016 113 (29) 8308-8313; first published June 29, 2016. https://doi.org/10.1073/pnas.1522615113
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      Inositol pyrophosphates inhibit synaptotagmin-dependent exocytosis
      Tae-Sun Lee, Joo-Young Lee, Jae Won Kyung, Yoosoo Yang, Seung Ju Park, Seulgi Lee, Igor Pavlovic, Byoungjae Kong, Yong Seok Jho, Henning J. Jessen, Dae-Hyuk Kweon, Yeon-Kyun Shin, Sung Hyun Kim, Tae-Young Yoon, and Seyun Kim
      PNAS July 19, 2016 113 (29) 8314-8319; first published June 30, 2016. https://doi.org/10.1073/pnas.1521600113
  • Plant Biology

    • Open Access
      Mapping transcription factor interactome networks using HaloTag protein arrays
      Junshi Yazaki, Mary Galli, Alice Y. Kim, Kazumasa Nito, Fernando Aleman, Katherine N. Chang, Anne-Ruxandra Carvunis, Rosa Quan, Hien Nguyen, Liang Song, José M. Alvarez, Shao-shan Carol Huang, Huaming Chen, Niroshan Ramachandran, Stefan Altmann, Rodrigo A. Gutiérrez, David E. Hill, Julian I. Schroeder, Joanne Chory, Joshua LaBaer, Marc Vidal, Pascal Braun, and Joseph R. Ecker
      PNAS July 19, 2016 113 (29) E4238-E4247; first published June 29, 2016. https://doi.org/10.1073/pnas.1603229113
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      Methylation interactions in Arabidopsis hybrids require RNA-directed DNA methylation and are influenced by genetic variation
      Qingzhu Zhang, Dong Wang, Zhaobo Lang, Li He, Lan Yang, Liang Zeng, Yanqiang Li, Cheng Zhao, Huan Huang, Heng Zhang, Huiming Zhang, and Jian-Kang Zhu
      PNAS July 19, 2016 113 (29) E4248-E4256; first published July 5, 2016. https://doi.org/10.1073/pnas.1607851113
    • Open Access
      Borrowed alleles and convergence in serpentine adaptation
      Brian J. Arnold, Brett Lahner, Jeffrey M. DaCosta, Caroline M. Weisman, Jesse D. Hollister, David E. Salt, Kirsten Bomblies, and Levi Yant
      PNAS July 19, 2016 113 (29) 8320-8325; first published June 29, 2016. https://doi.org/10.1073/pnas.1600405113
    • Open Access
      Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity
      Michael T. Raissig, Emily Abrash, Akhila Bettadapur, John P. Vogel, and Dominique C. Bergmann
      PNAS July 19, 2016 113 (29) 8326-8331; first published July 5, 2016. https://doi.org/10.1073/pnas.1606728113
  • Psychological and Cognitive Sciences

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      Learning rational temporal eye movement strategies
      David Hoppe and Constantin A. Rothkopf
      PNAS July 19, 2016 113 (29) 8332-8337; first published July 5, 2016. https://doi.org/10.1073/pnas.1601305113

Correction (Online Only)

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    Correction for Traverse and Ochman, Conserved rates and patterns of transcription errors across bacterial growth states and lifestyles
    PNAS July 19, 2016 113 (29) E4257-E4258; first published July 11, 2016. https://doi.org/10.1073/pnas.1609677113
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Proceedings of the National Academy of Sciences: 113 (29)
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