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Table of Contents

November 29, 2016; vol. 113 no. 48

This Week in PNAS

  • You have access
    In This Issue
    PNAS November 29, 2016 113 (48) 13535-13537; https://doi.org/10.1073/iti4816113

Opinion

Leading scientists discuss current issues.
  • You have access
    Opinion: The dangers of faulty, biased, or malicious algorithms requires independent oversight
    • Front Matter
    Ben Shneiderman
    PNAS November 29, 2016 113 (48) 13538-13540; first published November 23, 2016. https://doi.org/10.1073/pnas.1618211113

QnAs

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    QnAs with Steven A. Balbus
    Paul Gabrielsen
    PNAS November 29, 2016 113 (48) 13541-13542; first published November 15, 2016. https://doi.org/10.1073/pnas.1617014113

    See companion article:

    • Gravitational wave stress tensor
      - Oct 03, 2016
  • You have access
    QnAs with Gerald M. Rubin
    Prashant Nair
    PNAS November 29, 2016 113 (48) 13543-13545; first published November 17, 2016. https://doi.org/10.1073/pnas.1617474113

Profile

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    Profile of Peter A. Jones
    Jennifer Viegas
    PNAS November 29, 2016 113 (48) 13546-13548; first published November 21, 2016. https://doi.org/10.1073/pnas.1617318113

    See companion article:

    • Vitamin C increases viral mimicry induced by DNMTi
      - Aug 29, 2016

Commentaries

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    Homogeneous nucleation: Patching the way from the macroscopic to the nanoscopic description
    Detlef Lohse and Andrea Prosperetti
    PNAS November 29, 2016 113 (48) 13549-13550; first published November 21, 2016. https://doi.org/10.1073/pnas.1616271113

    See companion article:

    • Cavitation in water under tension
      - Nov 01, 2016
  • You have access
    Multistep crystallization processes: How not to make perfect single crystals
    Daniel Bonn and Noushine Shahidzadeh
    PNAS November 29, 2016 113 (48) 13551-13553; first published November 21, 2016. https://doi.org/10.1073/pnas.1616536113

    See companion article:

    • Multiple pathways of crystal nucleation
      - Oct 24, 2016
  • You have access
    Baby birds do not always tell the truth
    Matthew B. Dugas
    PNAS November 29, 2016 113 (48) 13554-13556; first published November 21, 2016. https://doi.org/10.1073/pnas.1616640113

    See companion article:

    • Sibling rivalry and the evolution of dishonesty
      - Nov 07, 2016
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    Pandemic influenza and socioeconomic disparities: Lessons from 1918 Chicago
    Gerardo Chowell and Cécile Viboud
    PNAS November 29, 2016 113 (48) 13557-13559; first published November 22, 2016. https://doi.org/10.1073/pnas.1616537113

    See companion article:

    • Sociodemographic disparities of influenza in 1918
      - Nov 21, 2016

PNAS Plus Significance Statements

Brief statements written by the authors about the significance of their papers.
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    PNAS Plus Significance Statements
    PNAS November 29, 2016 113 (48) 13560-13563; https://doi.org/10.1073/pnas.ss11348

Physical Sciences

  • Applied Physical Sciences

    • You have access
      Predicting protein–ligand affinity with a random matrix framework
      Alpha A. Lee, Michael P. Brenner, and Lucy J. Colwell
      PNAS November 29, 2016 113 (48) 13564-13569; first published November 16, 2016. https://doi.org/10.1073/pnas.1611138113
    • Open Access
      Wind speed reductions by large-scale wind turbine deployments lower turbine efficiencies and set low generation limits
      Lee M. Miller and Axel Kleidon
      PNAS November 29, 2016 113 (48) 13570-13575; first published November 14, 2016. https://doi.org/10.1073/pnas.1602253113

      See companion article:

      • Wind resource estimates: More than extrapolation
        - Oct 12, 2017
    • You have access
      Achieving high power factor and output power density in p-type half-Heuslers Nb1-xTixFeSb
      Ran He, Daniel Kraemer, Jun Mao, Lingping Zeng, Qing Jie, Yucheng Lan, Chunhua Li, Jing Shuai, Hee Seok Kim, Yuan Liu, David Broido, Ching-Wu Chu, Gang Chen, and Zhifeng Ren
      PNAS November 29, 2016 113 (48) 13576-13581; first published November 15, 2016. https://doi.org/10.1073/pnas.1617663113
    • You have access
      Molecular mechanism for cavitation in water under tension
      • From the Cover
      Georg Menzl, Miguel A. Gonzalez, Philipp Geiger, Frédéric Caupin, José L. F. Abascal, Chantal Valeriani, and Christoph Dellago
      PNAS November 29, 2016 113 (48) 13582-13587; first published November 1, 2016. https://doi.org/10.1073/pnas.1608421113

      See companion article:

      • Homogeneous nucleation
        - Nov 21, 2016
    • You have access
      Mapping membrane activity in undiscovered peptide sequence space using machine learning
      Ernest Y. Lee, Benjamin M. Fulan, Gerard C. L. Wong, and Andrew L. Ferguson
      PNAS November 29, 2016 113 (48) 13588-13593; first published November 14, 2016. https://doi.org/10.1073/pnas.1609893113
  • Chemistry

    • Open Access
      Lifestyle chemistries from phones for individual profiling
      Amina Bouslimani, Alexey V. Melnik, Zhenjiang Xu, Amnon Amir, Ricardo R. da Silva, Mingxun Wang, Nuno Bandeira, Theodore Alexandrov, Rob Knight, and Pieter C. Dorrestein
      PNAS November 29, 2016 113 (48) E7645-E7654; first published November 14, 2016. https://doi.org/10.1073/pnas.1610019113
    • You have access
      Regional asynchronicity in dairy production and processing in early farming communities of the northern Mediterranean
      Cynthianne Debono Spiteri, Rosalind E. Gillis, Mélanie Roffet-Salque, Laura Castells Navarro, Jean Guilaine, Claire Manen, Italo M. Muntoni, Maria Saña Segui, Dushka Urem-Kotsou, Helen L. Whelton, Oliver E. Craig, Jean-Denis Vigne, and Richard P. Evershed
      PNAS November 29, 2016 113 (48) 13594-13599; first published November 14, 2016. https://doi.org/10.1073/pnas.1607810113
    • You have access
      Controlling DNA–nanoparticle serum interactions
      Kyryl Zagorovsky, Leo Y. T. Chou, and Warren C. W. Chan
      PNAS November 29, 2016 113 (48) 13600-13605; first published November 16, 2016. https://doi.org/10.1073/pnas.1610028113
    • You have access
      Barrierless association of CF2 and dissociation of C2F4 by variational transition-state theory and system-specific quantum Rice–Ramsperger–Kassel theory
      Junwei Lucas Bao, Xin Zhang, and Donald G. Truhlar
      PNAS November 29, 2016 113 (48) 13606-13611; first published November 10, 2016. https://doi.org/10.1073/pnas.1616208113
    • You have access
      Synergistic reaction of silver nitrate, silver nanoparticles, and methylene blue against bacteria
      Runze Li, Jie Chen, Thomas C. Cesario, Xin Wang, Joshua S. Yuan, and Peter M. Rentzepis
      PNAS November 29, 2016 113 (48) 13612-13617; first published November 14, 2016. https://doi.org/10.1073/pnas.1611193113
    • Open Access
      Multiple pathways of crystal nucleation in an extremely supersaturated aqueous potassium dihydrogen phosphate (KDP) solution droplet
      • From the Cover
      Sooheyong Lee, Haeng Sub Wi, Wonhyuk Jo, Yong Chan Cho, Hyun Hwi Lee, Se-Young Jeong, Yong-Il Kim, and Geun Woo Lee
      PNAS November 29, 2016 113 (48) 13618-13623; first published October 24, 2016. https://doi.org/10.1073/pnas.1604938113

      See companion article:

      • Multistep crystallization
        - Nov 21, 2016
    • You have access
      Diameter-dependent wetting of tungsten disulfide nanotubes
      Ohad Goldbart, Sidney R. Cohen, Ifat Kaplan-Ashiri, Polina Glazyrina, H. Daniel Wagner, Andrey Enyashin, and Reshef Tenne
      PNAS November 29, 2016 113 (48) 13624-13629; first published November 16, 2016. https://doi.org/10.1073/pnas.1607202113
  • Computer Sciences

    • Open Access
      Unreasonable effectiveness of learning neural networks: From accessible states and robust ensembles to basic algorithmic schemes
      Carlo Baldassi, Christian Borgs, Jennifer T. Chayes, Alessandro Ingrosso, Carlo Lucibello, Luca Saglietti, and Riccardo Zecchina
      PNAS November 29, 2016 113 (48) E7655-E7662; first published November 15, 2016. https://doi.org/10.1073/pnas.1608103113
  • Earth, Atmospheric, and Planetary Sciences

    • Open Access
      Persistent sulfate formation from London Fog to Chinese haze
      Gehui Wang, Renyi Zhang, Mario E. Gomez, Lingxiao Yang, Misti Levy Zamora, Min Hu, Yun Lin, Jianfei Peng, Song Guo, Jingjing Meng, Jianjun Li, Chunlei Cheng, Tafeng Hu, Yanqin Ren, Yuesi Wang, Jian Gao, Junji Cao, Zhisheng An, Weijian Zhou, Guohui Li, Jiayuan Wang, Pengfei Tian, Wilmarie Marrero-Ortiz, Jeremiah Secrest, Zhuofei Du, Jing Zheng, Dongjie Shang, Limin Zeng, Min Shao, Weigang Wang, Yao Huang, Yuan Wang, Yujiao Zhu, Yixin Li, Jiaxi Hu, Bowen Pan, Li Cai, Yuting Cheng, Yuemeng Ji, Fang Zhang, Daniel Rosenfeld, Peter S. Liss, Robert A. Duce, Charles E. Kolb, and Mario J. Molina
      PNAS November 29, 2016 113 (48) 13630-13635; first published November 14, 2016. https://doi.org/10.1073/pnas.1616540113
  • Engineering

    • Open Access
      Tissue-scale, personalized modeling and simulation of prostate cancer growth
      Guillermo Lorenzo, Michael A. Scott, Kevin Tew, Thomas J. R. Hughes, Yongjie Jessica Zhang, Lei Liu, Guillermo Vilanova, and Hector Gomez
      PNAS November 29, 2016 113 (48) E7663-E7671; first published November 16, 2016. https://doi.org/10.1073/pnas.1615791113
  • Environmental Sciences

    • Open Access
      Identification and characterization of high methane-emitting abandoned oil and gas wells
      Mary Kang, Shanna Christian, Michael A. Celia, Denise L. Mauzerall, Markus Bill, Alana R. Miller, Yuheng Chen, Mark E. Conrad, Thomas H. Darrah, and Robert B. Jackson
      PNAS November 29, 2016 113 (48) 13636-13641; first published November 14, 2016. https://doi.org/10.1073/pnas.1605913113
    • You have access
      Temperature response of soil respiration largely unaltered with experimental warming
      Joanna C. Carey, Jianwu Tang, Pamela H. Templer, Kevin D. Kroeger, Thomas W. Crowther, Andrew J. Burton, Jeffrey S. Dukes, Bridget Emmett, Serita D. Frey, Mary A. Heskel, Lifen Jiang, Megan B. Machmuller, Jacqueline Mohan, Anne Marie Panetta, Peter B. Reich, Sabine Reinsch, Xin Wang, Steven D. Allison, Chris Bamminger, Scott Bridgham, Scott L. Collins, Giovanbattista de Dato, William C. Eddy, Brian J. Enquist, Marc Estiarte, John Harte, Amanda Henderson, Bart R. Johnson, Klaus Steenberg Larsen, Yiqi Luo, Sven Marhan, Jerry M. Melillo, Josep Peñuelas, Laurel Pfeifer-Meister, Christian Poll, Edward Rastetter, Andrew B. Reinmann, Lorien L. Reynolds, Inger K. Schmidt, Gaius R. Shaver, Aaron L. Strong, Vidya Suseela, and Albert Tietema
      PNAS November 29, 2016 113 (48) 13797-13802; first published November 14, 2016. https://doi.org/10.1073/pnas.1605365113
  • Physics

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      Quantum entanglement of angular momentum states with quantum numbers up to 10,010
      Robert Fickler, Geoff Campbell, Ben Buchler, Ping Koy Lam, and Anton Zeilinger
      PNAS November 29, 2016 113 (48) 13642-13647; first published November 15, 2016. https://doi.org/10.1073/pnas.1616889113

      See companion article:

      • Twisted light transmission over 143 km
        - Nov 15, 2016
    • You have access
      Twisted light transmission over 143 km
      Mario Krenn, Johannes Handsteiner, Matthias Fink, Robert Fickler, Rupert Ursin, Mehul Malik, and Anton Zeilinger
      PNAS November 29, 2016 113 (48) 13648-13653; first published November 15, 2016. https://doi.org/10.1073/pnas.1612023113

      See companion article:

      • Entanglement with quantum numbers up to 10,010
        - Nov 15, 2016
    • You have access
      Fermi liquid behavior of the in-plane resistivity in the pseudogap state of YBa2Cu4O8
      Cyril Proust, Baptiste Vignolle, Julien Levallois, S. Adachi, and Nigel E. Hussey
      PNAS November 29, 2016 113 (48) 13654-13659; first published November 16, 2016. https://doi.org/10.1073/pnas.1602709113
    • Open Access
      Anomalous dynamics of interstitial dopants in soft crystals
      Justin Tauber, Ruben Higler, and Joris Sprakel
      PNAS November 29, 2016 113 (48) 13660-13665; first published November 17, 2016. https://doi.org/10.1073/pnas.1609595113
  • Sustainability Science

    • Open Access
      Life cycle greenhouse gas emissions and freshwater consumption associated with Bakken tight oil
      Ian J. Laurenzi, Joule A. Bergerson, and Kavan Motazedi
      PNAS November 29, 2016 113 (48) E7672-E7680; first published November 14, 2016. https://doi.org/10.1073/pnas.1607475113

Social Sciences

  • Anthropology

    • You have access
      Phylogenetic approach to the evolution of color term systems
      Hannah J. Haynie and Claire Bowern
      PNAS November 29, 2016 113 (48) 13666-13671; first published November 14, 2016. https://doi.org/10.1073/pnas.1613666113

      See companion article:

      • Color terms are lost, despite missing data
        - Sep 14, 2017
    • You have access
      Late Archaic–Early Formative period microbotanical evidence for potato at Jiskairumoko in the Titicaca Basin of southern Peru
      Claudia Ursula Rumold and Mark S. Aldenderfer
      PNAS November 29, 2016 113 (48) 13672-13677; first published November 14, 2016. https://doi.org/10.1073/pnas.1604265113
  • Economic Sciences

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      Universal screening increases the representation of low-income and minority students in gifted education
      David Card and Laura Giuliano
      PNAS November 29, 2016 113 (48) 13678-13683; first published November 15, 2016. https://doi.org/10.1073/pnas.1605043113
  • Environmental Sciences

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      Socioecological transitions trigger fire regime shifts and modulate fire–climate interactions in the Sierra Nevada, USA, 1600–2015 CE
      Alan H. Taylor, Valerie Trouet, Carl N. Skinner, and Scott Stephens
      PNAS November 29, 2016 113 (48) 13684-13689; first published November 14, 2016. https://doi.org/10.1073/pnas.1609775113
  • Political Sciences

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      Effect of holding office on the behavior of politicians
      Daniel Enemark, Clark C. Gibson, Mathew D. McCubbins, and Brigitte Seim
      PNAS November 29, 2016 113 (48) 13690-13695; first published November 15, 2016. https://doi.org/10.1073/pnas.1511501113
  • Psychological and Cognitive Sciences

    • You have access
      Statistics of natural reverberation enable perceptual separation of sound and space
      James Traer and Josh H. McDermott
      PNAS November 29, 2016 113 (48) E7856-E7865; first published November 10, 2016. https://doi.org/10.1073/pnas.1612524113
    • You have access
      Adolescents growing up amidst intractable conflict attenuate brain response to pain of outgroup
      Jonathan Levy, Abraham Goldstein, Moran Influs, Shafiq Masalha, Orna Zagoory-Sharon, and Ruth Feldman
      PNAS November 29, 2016 113 (48) 13696-13701; first published November 14, 2016. https://doi.org/10.1073/pnas.1612903113
    • You have access
      The double identity of linguistic doubling
      Iris Berent, Outi Bat-El, Diane Brentari, Amanda Dupuis, and Vered Vaknin-Nusbaum
      PNAS November 29, 2016 113 (48) 13702-13707; first published November 11, 2016. https://doi.org/10.1073/pnas.1613749113
  • Sustainability Science

    • Open Access
      Wind speed reductions by large-scale wind turbine deployments lower turbine efficiencies and set low generation limits
      Lee M. Miller and Axel Kleidon
      PNAS November 29, 2016 113 (48) 13570-13575; first published November 14, 2016. https://doi.org/10.1073/pnas.1602253113

      See companion article:

      • Wind resource estimates: More than extrapolation
        - Oct 12, 2017
    • Open Access
      Identification and characterization of high methane-emitting abandoned oil and gas wells
      Mary Kang, Shanna Christian, Michael A. Celia, Denise L. Mauzerall, Markus Bill, Alana R. Miller, Yuheng Chen, Mark E. Conrad, Thomas H. Darrah, and Robert B. Jackson
      PNAS November 29, 2016 113 (48) 13636-13641; first published November 14, 2016. https://doi.org/10.1073/pnas.1605913113
    • You have access
      Socioecological transitions trigger fire regime shifts and modulate fire–climate interactions in the Sierra Nevada, USA, 1600–2015 CE
      Alan H. Taylor, Valerie Trouet, Carl N. Skinner, and Scott Stephens
      PNAS November 29, 2016 113 (48) 13684-13689; first published November 14, 2016. https://doi.org/10.1073/pnas.1609775113
    • Open Access
      Multiplex social ecological network analysis reveals how social changes affect community robustness more than resource depletion
      Jacopo A. Baggio, Shauna B. BurnSilver, Alex Arenas, James S. Magdanz, Gary P. Kofinas, and Manlio De Domenico
      PNAS November 29, 2016 113 (48) 13708-13713; first published November 16, 2016. https://doi.org/10.1073/pnas.1604401113
  • Social Sciences

    • Open Access
      The emergence of longevous populations
      • Cozzarelli Prize Winner
      Fernando Colchero, Roland Rau, Owen R. Jones, Julia A. Barthold, Dalia A. Conde, Adam Lenart, Laszlo Nemeth, Alexander Scheuerlein, Jonas Schoeley, Catalina Torres, Virginia Zarulli, Jeanne Altmann, Diane K. Brockman, Anne M. Bronikowski, Linda M. Fedigan, Anne E. Pusey, Tara S. Stoinski, Karen B. Strier, Annette Baudisch, Susan C. Alberts, and James W. Vaupel
      PNAS November 29, 2016 113 (48) E7681-E7690; first published November 21, 2016. https://doi.org/10.1073/pnas.1612191113

Biological Sciences

  • Anthropology

    • You have access
      Regional asynchronicity in dairy production and processing in early farming communities of the northern Mediterranean
      Cynthianne Debono Spiteri, Rosalind E. Gillis, Mélanie Roffet-Salque, Laura Castells Navarro, Jean Guilaine, Claire Manen, Italo M. Muntoni, Maria Saña Segui, Dushka Urem-Kotsou, Helen L. Whelton, Oliver E. Craig, Jean-Denis Vigne, and Richard P. Evershed
      PNAS November 29, 2016 113 (48) 13594-13599; first published November 14, 2016. https://doi.org/10.1073/pnas.1607810113
  • Biochemistry

    • You have access
      Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor
      Nathan D. Thomsen, Michael R. Lawson, Lea B. Witkowsky, Song Qu, and James M. Berger
      PNAS November 29, 2016 113 (48) E7691-E7700; first published November 16, 2016. https://doi.org/10.1073/pnas.1616745113

      See companion article:

      • Substrate loading control in a hexameric helicase
        - Nov 07, 2016
    • You have access
      Ligand-induced and small-molecule control of substrate loading in a hexameric helicase
      Michael R. Lawson, Kevin Dyer, and James M. Berger
      PNAS November 29, 2016 113 (48) 13714-13719; first published November 7, 2016. https://doi.org/10.1073/pnas.1616749113

      See companion article:

      • Ring dynamics and substepping in a hexameric motor
        - Nov 16, 2016
    • You have access
      Tetraphenylethene-based highly emissive metallacage as a component of theranostic supramolecular nanoparticles
      Guocan Yu, Timothy R. Cook, Yang Li, Xuzhou Yan, Dan Wu, Li Shao, Jie Shen, Guping Tang, Feihe Huang, Xiaoyuan Chen, and Peter J. Stang
      PNAS November 29, 2016 113 (48) 13720-13725; first published November 15, 2016. https://doi.org/10.1073/pnas.1616836113
    • Open Access
      Structural basis of N-Myc binding by Aurora-A and its destabilization by kinase inhibitors
      Mark W. Richards, Selena G. Burgess, Evon Poon, Anne Carstensen, Martin Eilers, Louis Chesler, and Richard Bayliss
      PNAS November 29, 2016 113 (48) 13726-13731; first published November 11, 2016. https://doi.org/10.1073/pnas.1610626113
    • You have access
      Global transformation of erythrocyte properties via engagement of an SH2-like sequence in band 3
      Estela Puchulu-Campanella, Francesco M. Turrini, Yen-Hsing Li, and Philip S. Low
      PNAS November 29, 2016 113 (48) 13732-13737; first published November 15, 2016. https://doi.org/10.1073/pnas.1611904113
    • You have access
      Topic modeling for untargeted substructure exploration in metabolomics
      Justin Johan Jozias van der Hooft, Joe Wandy, Michael P. Barrett, Karl E. V. Burgess, and Simon Rogers
      PNAS November 29, 2016 113 (48) 13738-13743; first published November 16, 2016. https://doi.org/10.1073/pnas.1608041113
    • Open Access
      Two proofreading steps amplify the accuracy of genetic code translation
      Ka-Weng Ieong, Ülkü Uzun, Maria Selmer, and Måns Ehrenberg
      PNAS November 29, 2016 113 (48) 13744-13749; first published November 11, 2016. https://doi.org/10.1073/pnas.1610917113
    • You have access
      An HD domain phosphohydrolase active site tailored for oxetanocin-A biosynthesis
      Jennifer Bridwell-Rabb, Gyunghoon Kang, Aoshu Zhong, Hung-wen Liu, and Catherine L. Drennan
      PNAS November 29, 2016 113 (48) 13750-13755; first published November 14, 2016. https://doi.org/10.1073/pnas.1613610113
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      Neutron structures of the Helicobacter pylori 5′-methylthioadenosine nucleosidase highlight proton sharing and protonation states
      Michael T. Banco, Vidhi Mishra, Andreas Ostermann, Tobias E. Schrader, Gary B. Evans, Andrey Kovalevsky, and Donald R. Ronning
      PNAS November 29, 2016 113 (48) 13756-13761; first published November 16, 2016. https://doi.org/10.1073/pnas.1609718113
  • Biophysics and Computational Biology

    • You have access
      Predicting protein–ligand affinity with a random matrix framework
      Alpha A. Lee, Michael P. Brenner, and Lucy J. Colwell
      PNAS November 29, 2016 113 (48) 13564-13569; first published November 16, 2016. https://doi.org/10.1073/pnas.1611138113
    • Open Access
      Fluorine-19 NMR and computational quantification of isoflurane binding to the voltage-gated sodium channel NaChBac
      Monica N. Kinde, Vasyl Bondarenko, Daniele Granata, Weiming Bu, Kimberly C. Grasty, Patrick J. Loll, Vincenzo Carnevale, Michael L. Klein, Roderic G. Eckenhoff, Pei Tang, and Yan Xu
      PNAS November 29, 2016 113 (48) 13762-13767; first published November 15, 2016. https://doi.org/10.1073/pnas.1609939113
    • Open Access
      Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers
      Babak Alaei-Mahabadi, Joydeep Bhadury, Joakim W. Karlsson, Jonas A. Nilsson, and Erik Larsson
      PNAS November 29, 2016 113 (48) 13768-13773; first published November 16, 2016. https://doi.org/10.1073/pnas.1606220113
  • Cell Biology

    • You have access
      Two familial ALS proteins function in prevention/repair of transcription-associated DNA damage
      Sarah J. Hill, Daniel A. Mordes, Lisa A. Cameron, Donna S. Neuberg, Serena Landini, Kevin Eggan, and David M. Livingston
      PNAS November 29, 2016 113 (48) E7701-E7709; first published November 14, 2016. https://doi.org/10.1073/pnas.1611673113
    • You have access
      DNA polymerase ζ limits chromosomal damage and promotes cell survival following aflatoxin exposure
      Ying-Chih Lin, Nichole Owen, Irina G. Minko, Sabine S. Lange, Junya Tomida, Liang Li, Michael P. Stone, Richard D. Wood, Amanda K. McCullough, and R. Stephen Lloyd
      PNAS November 29, 2016 113 (48) 13774-13779; first published November 14, 2016. https://doi.org/10.1073/pnas.1609024113
  • Developmental Biology

    • Open Access
      Notch1 controls development of the extravillous trophoblast lineage in the human placenta
      Sandra Haider, Gudrun Meinhardt, Leila Saleh, Christian Fiala, Jürgen Pollheimer, and Martin Knöfler
      PNAS November 29, 2016 113 (48) E7710-E7719; first published November 14, 2016. https://doi.org/10.1073/pnas.1612335113
    • Open Access
      Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape
      Ruben Schep, Anamaria Necsulea, Eddie Rodríguez-Carballo, Isabel Guerreiro, Guillaume Andrey, Thi Hanh Nguyen Huynh, Virginie Marcet, Jozsef Zákány, Denis Duboule, and Leonardo Beccari
      PNAS November 29, 2016 113 (48) E7720-E7729; first published November 15, 2016. https://doi.org/10.1073/pnas.1617141113
  • Ecology

    • Open Access
      Predators catalyze an increase in chloroviruses by foraging on the symbiotic hosts of zoochlorellae
      John P. DeLong, Zeina Al-Ameeli, Garry Duncan, James L. Van Etten, and David D. Dunigan
      PNAS November 29, 2016 113 (48) 13780-13784; first published November 7, 2016. https://doi.org/10.1073/pnas.1613843113
    • Open Access
      Global patterns of kelp forest change over the past half-century
      Kira A. Krumhansl, Daniel K. Okamoto, Andrew Rassweiler, Mark Novak, John J. Bolton, Kyle C. Cavanaugh, Sean D. Connell, Craig R. Johnson, Brenda Konar, Scott D. Ling, Fiorenza Micheli, Kjell M. Norderhaug, Alejandro Pérez-Matus, Isabel Sousa-Pinto, Daniel C. Reed, Anne K. Salomon, Nick T. Shears, Thomas Wernberg, Robert J. Anderson, Nevell S. Barrett, Alejandro H. Buschmann, Mark H. Carr, Jennifer E. Caselle, Sandrine Derrien-Courtel, Graham J. Edgar, Matt Edwards, James A. Estes, Claire Goodwin, Michael C. Kenner, David J. Kushner, Frithjof E. Moy, Julia Nunn, Robert S. Steneck, Julio Vásquez, Jane Watson, Jon D. Witman, and Jarrett E. K. Byrnes
      PNAS November 29, 2016 113 (48) 13785-13790; first published November 14, 2016. https://doi.org/10.1073/pnas.1606102113
    • You have access
      Long-term empirical evidence of ocean warming leading to tropicalization of fish communities, increased herbivory, and loss of kelp
      Adriana Vergés, Christopher Doropoulos, Hamish A. Malcolm, Mathew Skye, Marina Garcia-Pizá, Ezequiel M. Marzinelli, Alexandra H. Campbell, Enric Ballesteros, Andrew S. Hoey, Ana Vila-Concejo, Yves-Marie Bozec, and Peter D. Steinberg
      PNAS November 29, 2016 113 (48) 13791-13796; first published November 14, 2016. https://doi.org/10.1073/pnas.1610725113
  • Environmental Sciences

    • You have access
      Temperature response of soil respiration largely unaltered with experimental warming
      Joanna C. Carey, Jianwu Tang, Pamela H. Templer, Kevin D. Kroeger, Thomas W. Crowther, Andrew J. Burton, Jeffrey S. Dukes, Bridget Emmett, Serita D. Frey, Mary A. Heskel, Lifen Jiang, Megan B. Machmuller, Jacqueline Mohan, Anne Marie Panetta, Peter B. Reich, Sabine Reinsch, Xin Wang, Steven D. Allison, Chris Bamminger, Scott Bridgham, Scott L. Collins, Giovanbattista de Dato, William C. Eddy, Brian J. Enquist, Marc Estiarte, John Harte, Amanda Henderson, Bart R. Johnson, Klaus Steenberg Larsen, Yiqi Luo, Sven Marhan, Jerry M. Melillo, Josep Peñuelas, Laurel Pfeifer-Meister, Christian Poll, Edward Rastetter, Andrew B. Reinmann, Lorien L. Reynolds, Inger K. Schmidt, Gaius R. Shaver, Aaron L. Strong, Vidya Suseela, and Albert Tietema
      PNAS November 29, 2016 113 (48) 13797-13802; first published November 14, 2016. https://doi.org/10.1073/pnas.1605365113
  • Evolution

    • You have access
      Origins of the current seventh cholera pandemic
      Dalong Hu, Bin Liu, Lu Feng, Peng Ding, Xi Guo, Min Wang, Boyang Cao, Peter R. Reeves, and Lei Wang
      PNAS November 29, 2016 113 (48) E7730-E7739; first published November 14, 2016. https://doi.org/10.1073/pnas.1608732113
    • You have access
      Evolution of directional hearing in moths via conversion of bat detection devices to asymmetric pressure gradient receivers
      Andrew Reid, Thibaut Marin-Cudraz, James F. C. Windmill, and Michael D. Greenfield
      PNAS November 29, 2016 113 (48) E7740-E7748; first published November 14, 2016. https://doi.org/10.1073/pnas.1615691113
    • Open Access
      Sibling conflict and dishonest signaling in birds
      • From the Cover
      Shana M. Caro, Stuart A. West, and Ashleigh S. Griffin
      PNAS November 29, 2016 113 (48) 13803-13808; first published November 7, 2016. https://doi.org/10.1073/pnas.1606378113

      See companion article:

      • Begging, bragging, and deceit
        - Nov 21, 2016
  • Genetics

    • Open Access
      Transposon mutagenesis identifies genes that cooperate with mutant Pten in breast cancer progression
      Roberto Rangel, Song-Choon Lee, Kenneth Hon-Kim Ban, Liliana Guzman-Rojas, Michael B. Mann, Justin Y. Newberg, Takahiro Kodama, Leslie A. McNoe, Luxmanan Selvanesan, Jerrold M. Ward, Alistair G. Rust, Kuan-Yew Chin, Michael A. Black, Nancy A. Jenkins, and Neal G. Copeland
      PNAS November 29, 2016 113 (48) E7749-E7758; first published November 14, 2016. https://doi.org/10.1073/pnas.1613859113
    • Open Access
      Multiple mechanisms contribute to double-strand break repair at rereplication forks in Drosophila follicle cells
      Jessica L. Alexander, Kelly Beagan, Terry L. Orr-Weaver, and Mitch McVey
      PNAS November 29, 2016 113 (48) 13809-13814; first published November 14, 2016. https://doi.org/10.1073/pnas.1617110113
    • Open Access
      Duplication of chicken defensin7 gene generated by gene conversion and homologous recombination
      Mi Ok Lee, Susanne Bornelöv, Leif Andersson, Susan J. Lamont, Junfeng Chen, and James E. Womack
      PNAS November 29, 2016 113 (48) 13815-13820; first published November 14, 2016. https://doi.org/10.1073/pnas.1616948113
  • Immunology and Inflammation

    • You have access
      Density of immunogenic antigens does not explain the presence or absence of the T-cell–inflamed tumor microenvironment in melanoma
      Stefani Spranger, Jason J. Luke, Riyue Bao, Yuanyuan Zha, Kyle M. Hernandez, Yan Li, Alexander P. Gajewski, Jorge Andrade, and Thomas F. Gajewski
      PNAS November 29, 2016 113 (48) E7759-E7768; first published November 11, 2016. https://doi.org/10.1073/pnas.1609376113

      See companion article:

      • PD-1/PD-L, cytolytic activity, and mutational load
        - Nov 11, 2016
    • You have access
      Association of PD-1/PD-L axis expression with cytolytic activity, mutational load, and prognosis in melanoma and other solid tumors
      Ludmila Danilova, Hao Wang, Joel Sunshine, Genevieve J. Kaunitz, Tricia R. Cottrell, Haiying Xu, Jessica Esandrio, Robert A. Anders, Leslie Cope, Drew M. Pardoll, Charles G. Drake, and Janis M. Taube
      PNAS November 29, 2016 113 (48) E7769-E7777; first published November 11, 2016. https://doi.org/10.1073/pnas.1607836113

      See companion article:

      • Antigen-density inflamed vs. noninflamed tumors
        - Nov 11, 2016
    • You have access
      Trypanosoma brucei metabolite indolepyruvate decreases HIF-1α and glycolysis in macrophages as a mechanism of innate immune evasion
      Anne F. McGettrick, Sarah E. Corcoran, Paul J. G. Barry, Jennifer McFarland, Cécile Crès, Anne M. Curtis, Edward Franklin, Sinéad C. Corr, K. Hun Mok, Eoin P. Cummins, Cormac T. Taylor, Luke A. J. O’Neill, and Derek P. Nolan
      PNAS November 29, 2016 113 (48) E7778-E7787; first published November 15, 2016. https://doi.org/10.1073/pnas.1608221113
    • Open Access
      Tethered IL-15 augments antitumor activity and promotes a stem-cell memory subset in tumor-specific T cells
      Lenka V. Hurton, Harjeet Singh, Amer M. Najjar, Kirsten C. Switzer, Tiejuan Mi, Sourindra Maiti, Simon Olivares, Brian Rabinovich, Helen Huls, Marie-Andrée Forget, Vrushali Datar, Partow Kebriaei, Dean A. Lee, Richard E. Champlin, and Laurence J. N. Cooper
      PNAS November 29, 2016 113 (48) E7788-E7797; first published November 14, 2016. https://doi.org/10.1073/pnas.1610544113
    • Open Access
      In vivo amelioration of endogenous antitumor autoantibodies via low-dose P4N through the LTA4H/activin A/BAFF pathway
      Yu-Ling Lin, Nu-Man Tsai, Cheng-Hao Hsieh, Shu-Yi Ho, Jung Chang, Hsin-Yi Wu, Ming-Hua Hsu, Chia-Ching Chang, Kuang-Wen Liao, Tiffany L. B. Jackson, David E. Mold, and Ru Chih C. Huang
      PNAS November 29, 2016 113 (48) E7798-E7807; first published November 17, 2016. https://doi.org/10.1073/pnas.1604752113
    • You have access
      Mouse model for acute Epstein–Barr virus infection
      Tristan Wirtz, Timm Weber, Sven Kracker, Thomas Sommermann, Klaus Rajewsky, and Tomoharu Yasuda
      PNAS November 29, 2016 113 (48) 13821-13826; first published November 16, 2016. https://doi.org/10.1073/pnas.1616574113
    • You have access
      Graft versus self (GvS) against T-cell autoantigens is a mechanism of graft–host interaction
      Nora Mirza, Manfred Zierhut, Andreas Korn, Antje Bornemann, Wichard Vogel, Barbara Schmid-Horch, Wolfgang A. Bethge, Stefan Stevanović, Helmut R. Salih, Lothar Kanz, Hans-Georg Rammensee, and Sebastian P. Haen
      PNAS November 29, 2016 113 (48) 13827-13832; first published November 10, 2016. https://doi.org/10.1073/pnas.1609118113
    • Open Access
      Gram-positive bacteria are held at a distance in the colon mucus by the lectin-like protein ZG16
      Joakim H. Bergström, George M. H. Birchenough, Gergely Katona, Bjoern O. Schroeder, André Schütte, Anna Ermund, Malin E. V. Johansson, and Gunnar C. Hansson
      PNAS November 29, 2016 113 (48) 13833-13838; first published November 14, 2016. https://doi.org/10.1073/pnas.1611400113
  • Medical Sciences

    • You have access
      Heparanase is required for activation and function of macrophages
      Lilach Gutter-Kapon, Dror Alishekevitz, Yuval Shaked, Jin-Ping Li, Ami Aronheim, Neta Ilan, and Israel Vlodavsky
      PNAS November 29, 2016 113 (48) E7808-E7817; first published November 14, 2016. https://doi.org/10.1073/pnas.1611380113
    • You have access
      Controlling DNA–nanoparticle serum interactions
      Kyryl Zagorovsky, Leo Y. T. Chou, and Warren C. W. Chan
      PNAS November 29, 2016 113 (48) 13600-13605; first published November 16, 2016. https://doi.org/10.1073/pnas.1610028113
    • Open Access
      Disparities in influenza mortality and transmission related to sociodemographic factors within Chicago in the pandemic of 1918
      • From the Cover
      Kyra H. Grantz, Madhura S. Rane, Henrik Salje, Gregory E. Glass, Stephen E. Schachterle, and Derek A. T. Cummings
      PNAS November 29, 2016 113 (48) 13839-13844; first published November 21, 2016. https://doi.org/10.1073/pnas.1612838113

      See companion article:

      • 1918 pandemic flu and socioeconomic disparities
        - Nov 22, 2016

      See companion article:

      • Mechanisms of pandemic mortality disparities
        - Apr 06, 2017
    • Open Access
      Epipolymorphisms associated with the clinical outcome of autoimmune arthritis affect CD4+ T cell activation pathways
      Roberto Spreafico, Maura Rossetti, John W. Whitaker, Wei Wang, Daniel J. Lovell, and Salvatore Albani
      PNAS November 29, 2016 113 (48) 13845-13850; first published November 14, 2016. https://doi.org/10.1073/pnas.1524056113
    • You have access
      Amyloid fibrils from the N-terminal prion protein fragment are infectious
      Jin-Kyu Choi, Ignazio Cali, Krystyna Surewicz, Qingzhong Kong, Pierluigi Gambetti, and Witold K. Surewicz
      PNAS November 29, 2016 113 (48) 13851-13856; first published November 14, 2016. https://doi.org/10.1073/pnas.1610716113
    • You have access
      Nanoparticle engineered TRAIL-overexpressing adipose-derived stem cells target and eradicate glioblastoma via intracranial delivery
      Xinyi Jiang, Sergio Fitch, Christine Wang, Christy Wilson, Jianfeng Li, Gerald A. Grant, and Fan Yang
      PNAS November 29, 2016 113 (48) 13857-13862; first published November 14, 2016. https://doi.org/10.1073/pnas.1615396113
  • Microbiology

    • You have access
      Role of nucleotide-binding oligomerization domain 1 (NOD1) and its variants in human cytomegalovirus control in vitro and in vivo
      Yi-Hsin Fan, Sujayita Roy, Rupkatha Mukhopadhyay, Arun Kapoor, Priya Duggal, Genevieve L. Wojcik, Robert F. Pass, and Ravit Arav-Boger
      PNAS November 29, 2016 113 (48) E7818-E7827; first published November 16, 2016. https://doi.org/10.1073/pnas.1611711113
    • Open Access
      Yellow fever virus capsid protein is a potent suppressor of RNA silencing that binds double-stranded RNA
      Glady Hazitha Samuel, Michael R. Wiley, Atif Badawi, Zach N. Adelman, and Kevin M. Myles
      PNAS November 29, 2016 113 (48) 13863-13868; first published November 14, 2016. https://doi.org/10.1073/pnas.1600544113
    • Open Access
      Structural and functional analysis of an anchorless fibronectin-binding protein FBPS from Gram-positive bacterium Streptococcus suis
      Abednego Moki Musyoki, Zhongyu Shi, Chunling Xuan, Guangwen Lu, Jianxun Qi, Feng Gao, Beiwen Zheng, Qiangmin Zhang, Yan Li, Joel Haywood, Cuihua Liu, Jinghua Yan, Yi Shi, and George F. Gao
      PNAS November 29, 2016 113 (48) 13869-13874; first published November 10, 2016. https://doi.org/10.1073/pnas.1608406113
    • You have access
      Plant nodulation inducers enhance horizontal gene transfer of Azorhizobium caulinodans symbiosis island
      Jun Ling, Hui Wang, Ping Wu, Tao Li, Yu Tang, Nawar Naseer, Huiming Zheng, Catherine Masson-Boivin, Zengtao Zhong, and Jun Zhu
      PNAS November 29, 2016 113 (48) 13875-13880; first published November 14, 2016. https://doi.org/10.1073/pnas.1615121113
    • Open Access
      Armed conflict and population displacement as drivers of the evolution and dispersal of Mycobacterium tuberculosis
      Vegard Eldholm, John H.-O. Pettersson, Ola B. Brynildsrud, Andrew Kitchen, Erik Michael Rasmussen, Troels Lillebaek, Janne O. Rønning, Valeriu Crudu, Anne Torunn Mengshoel, Nadia Debech, Kristian Alfsnes, Jon Bohlin, Caitlin S. Pepperell, and Francois Balloux
      PNAS November 29, 2016 113 (48) 13881-13886; first published November 21, 2016. https://doi.org/10.1073/pnas.1611283113
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      Genome-wide screen identifies host colonization determinants in a bacterial gut symbiont
      J. Elijah Powell, Sean P. Leonard, Waldan K. Kwong, Philipp Engel, and Nancy A. Moran
      PNAS November 29, 2016 113 (48) 13887-13892; first published November 14, 2016. https://doi.org/10.1073/pnas.1610856113
  • Neuroscience

    • You have access
      VEGF preconditioning leads to stem cell remodeling and attenuates age-related decay of adult hippocampal neurogenesis
      Tamar Licht, Gadiel Rothe, Tirzah Kreisel, Brachi Wolf, Ofra Benny, Alasdair G. Rooney, Charles ffrench-Constant, Grigori Enikolopov, and Eli Keshet
      PNAS November 29, 2016 113 (48) E7828-E7836; first published November 14, 2016. https://doi.org/10.1073/pnas.1609592113
    • You have access
      Circadian rhythms identified in Caenorhabditis elegans by in vivo long-term monitoring of a bioluminescent reporter
      María Eugenia Goya, Andrés Romanowski, Carlos S. Caldart, Claire Y. Bénard, and Diego A. Golombek
      PNAS November 29, 2016 113 (48) E7837-E7845; first published November 14, 2016. https://doi.org/10.1073/pnas.1605769113
    • You have access
      Endogenous central amygdala mu-opioid receptor signaling promotes sodium appetite in mice
      Craig M. Smith, Lesley L. Walker, Tanawan Leeboonngam, Michael J. McKinley, Derek A. Denton, and Andrew J. Lawrence
      PNAS November 29, 2016 113 (48) 13893-13898; first published November 14, 2016. https://doi.org/10.1073/pnas.1616664113
    • You have access
      Spontaneous default network activity reflects behavioral variability independent of mind-wandering
      Aaron Kucyi, Michael Esterman, Clay S. Riley, and Eve M. Valera
      PNAS November 29, 2016 113 (48) 13899-13904; first published November 15, 2016. https://doi.org/10.1073/pnas.1611743113

      See companion article:

      • Fitting data to neural models of mind-wandering
        - Jul 13, 2017
  • Physiology

    • You have access
      Atomic determinants of BK channel activation by polyunsaturated fatty acids
      Yutao Tian, Marius Aursnes, Trond Vidar Hansen, Jørn Eivind Tungen, Jason D. Galpin, Lilia Leisle, Christopher A. Ahern, Rong Xu, Stefan H. Heinemann, and Toshinori Hoshi
      PNAS November 29, 2016 113 (48) 13905-13910; first published November 14, 2016. https://doi.org/10.1073/pnas.1615562113
  • Plant Biology

    • You have access
      Control of seed dormancy in Arabidopsis by a cis-acting noncoding antisense transcript
      Halina Fedak, Malgorzata Palusinska, Katarzyna Krzyczmonik, Lien Brzezniak, Ruslan Yatusevich, Zbigniew Pietras, Szymon Kaczanowski, and Szymon Swiezewski
      PNAS November 29, 2016 113 (48) E7846-E7855; first published November 15, 2016. https://doi.org/10.1073/pnas.1608827113
    • You have access
      Standing genetic variation in a tissue-specific enhancer underlies selfing-syndrome evolution in Capsella
      • From the Cover
      Adrien Sicard, Christian Kappel, Young Wha Lee, Natalia Joanna Woźniak, Cindy Marona, John R. Stinchcombe, Stephen I. Wright, and Michael Lenhard
      PNAS November 29, 2016 113 (48) 13911-13916; first published November 14, 2016. https://doi.org/10.1073/pnas.1613394113
    • You have access
      Arabidopsis thaliana GH3.5 acyl acid amido synthetase mediates metabolic crosstalk in auxin and salicylic acid homeostasis
      Corey S. Westfall, Ashley M. Sherp, Chloe Zubieta, Sophie Alvarez, Evelyn Schraft, Romain Marcellin, Loren Ramirez, and Joseph M. Jez
      PNAS November 29, 2016 113 (48) 13917-13922; first published November 14, 2016. https://doi.org/10.1073/pnas.1612635113
  • Psychological and Cognitive Sciences

    • You have access
      Statistics of natural reverberation enable perceptual separation of sound and space
      James Traer and Josh H. McDermott
      PNAS November 29, 2016 113 (48) E7856-E7865; first published November 10, 2016. https://doi.org/10.1073/pnas.1612524113
    • You have access
      Cortical networks involved in visual awareness independent of visual attention
      Taylor W. Webb, Kajsa M. Igelström, Aaron Schurger, and Michael S. A. Graziano
      PNAS November 29, 2016 113 (48) 13923-13928; first published November 14, 2016. https://doi.org/10.1073/pnas.1611505113

Corrections (Online Only)

  • You have access
    Correction for Sakata et al., Voltage-dependent motion of the catalytic region of voltage-sensing phosphatase monitored by a fluorescent amino acid
    PNAS November 29, 2016 113 (48) E7866; first published November 14, 2016. https://doi.org/10.1073/pnas.1617861113
  • You have access
    Correction for Delgehyr et al., Drosophila Mgr, a Prefoldin subunit cooperating with von Hippel Lindau to regulate tubulin stability
    PNAS November 29, 2016 113 (48) E7867-E7868; first published November 14, 2016. https://doi.org/10.1073/pnas.1617441113
  • You have access
    Correction for Coates et al., Wildfire, climate, and invasive grass interactions negatively impact an indicator species by reshaping sagebrush ecosystems
    PNAS November 29, 2016 113 (48) E7869; first published November 9, 2016. https://doi.org/10.1073/pnas.1617905113

SI Correction (Online Only)

  • You have access
    Correction to Supporting Information for Biswas et al., E-cadherin junction formation involves an active kinetic nucleation process
    PNAS November 29, 2016 113 (48) E7870; first published November 14, 2016. https://doi.org/10.1073/pnas.1617361113
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Proceedings of the National Academy of Sciences: 113 (48)
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